Rorug02G0224400

Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
21871532 .. 21873233
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0224400.1

Sequence Viewer

Length: 1596 bp
ATGGCATCAAGCACCCAAAGAGCTTCTACGTCCATTCCTTTAGCTTCTTCTTGGAAATACGATGTGTTTTTGAGTTTCAGGGGGGAAGAAACCCGCAAGAGTTTTACAGACCATCTACATAAAGCTTTGAAGGTGAAAAGAATCAAAGTTTTCAAGGATGACCTTCAACTTGAGACAGGTTCAACTATCTCTAAAAGGCTCTGGACTGCAATCGAAGAATCAAGGTTTGCCATTATTGTCTTCTCACAAGATTACGCCGGTTCAAAATGGTGCTTAGATGAACTTGTAAAGATTTTTGAATGCATGGGAGAGAGGGAGACAATTATCCCCATTTTTTATAATGTGGCTATATCCGATGTAAAACACCAAACAGGAACTTTTGGAGACGCCTTCAACAAGCATGAAAAAGAAAGGGTGCAAGGGTGCAAGACTGCTTTGACAACAGAAAGGGTGCAAGGGCTTCCACCTTTGACAACAGAAAGGGTGCAAGGGTGGAAGACTGCTTTGACAACAGTTGGTGATATATCTGGCAAGGATTTGGCACTATATCAGTCAGAGACCAAGTTTATCGAAGAAATTGTAGACAAACTGTATAACAAACTAGTATGCGCTCGCTGCAACACGAGGGTTGATGATGGCCTCAACTGCTTGGGTACTGTTTGGCATCGAGCATGTCTTCTGACTCTTCTCTGCAAAGGTTGCAACAGTCCATTTACTGATCTAGAGATTCGGAAATGTGGAGAAATTGGGGATCAGCCTTACCATGAAAGCTGCTATGAGCGAGAATATCTTGTATGCAATGTTTGCAAGACATCTATCCAAGATGGTCAAGTTGAGTATAAGGAATATCCATTCTGGCGACGAAGATATTGTTCCTCCCATGTAAATGATGGGACTCCTAGGTGTTGTAGCTGTGAAAGATTGAAGCCAAGGGACAAAACATATTATAAGCTCGATGATGGTCGAAAACTATGTCCGGAGTGTAAAGAGTCCATTGTCAATACTGATAATGGACGCCGATCCATTTGCCTTGAAGTACGAAACTTTTTTAAGAATTTAAATGTGAAAGTAGAGAAAATTCCAGTGCGGTTGGTCAGCAGACAAGTCATAATCGATGCCATGAAGGAGGGAAATGATGGTTCTGATCGCCAATTGCCGGTAATAAGATCAGTCTGCTTGTTTGAAGAGCTGCTTACCAGTGCTGTTGGGGGGAGGCCGAGCCAGCTTTGCTGTGAAATTAAAAAAATTTTAATCTGGTACGGCCTTCCTAGAATATTGACAGGGTCACTTCTAGCTCAACAGATGATGAGGGCATGGCTAAGGGTTAATTGCTGTCCGAATATGAGCCCTGAGGTTGAAAAAGGTATCTGCCGATATTTTGCAAATAGGTGGTTGGAGTACTCTTCTAATTCTGATTCATCTAAAAAATTGTCTGAGTTTGAGAAGAAGCTTTGTAGGAAACGCAAAACTGAGTTAGAATGTGAAGCATTAGTGACAGCTAAGAACGCTGTGTGCAAGCATAATCTAGGAAAGACACTTGAAACAATCCGAAAGACAGGAAAGTTTCCATCTGTGAGCCCTGAAATAAATAGATAA

Protein Analysis

531

Amino Acids

60.82

Weight (kDa)

8.88

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 19 - 207 3.9e-44 TIR domain
TIR_2 PF13676 22 - 115 1.5e-14 TIR domain
DA1-like PF12315 353 - 469 4.6e-24 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 339, 948
AccI GTMKAC 1 cut(s) 582
AccIII TCCGGA 1 cut(s) 976
AciI CCGC 2 cut(s) 94, 1087
AclWI GGATC 2 cut(s) 759, 1014
AcsI RAATTY 3 cut(s) 1054, 1077, 1245
AcyI GRCGYC 2 cut(s) 387, 1015
AfaI GTAC 4 cut(s) 655, 1038, 1259, 1400
AfiI CCNNNNNNNGG 1 cut(s) 1156
AhlI ACTAGT 1 cut(s) 601
Alw26I GTCTC 4 cut(s) 167, 311, 378, 551
AlwI GGATC 2 cut(s) 759, 1014
Aor13HI TCCGGA 1 cut(s) 976
AoxI GGCC 3 cut(s) 637, 1214, 1261
ApeKI GCWGC 3 cut(s) 615, 771, 1189
ApoI RAATTY 3 cut(s) 1054, 1077, 1245
ArsI GACNNNNNNTTYG 2 cut(s) 958, 990
AspA2I CCTAGG 1 cut(s) 899
AspLEI GCGC 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 145, 530
AvrII CCTAGG 1 cut(s) 899
AxyI CCTNAGG 1 cut(s) 1350
BanII GRGCYC 2 cut(s) 1349, 1580
BauI CACGAG 1 cut(s) 622
BbsI GAAGAC 3 cut(s) 232, 503, 668
BbvI GCAGC 3 cut(s) 602, 758, 1176
BccI CCATC 7 cut(s) 120, 629, 818, 884, 953, 1130, 1576
BceAI ACGGC 1 cut(s) 1276
BcgI CGANNNNNNTGC 2 cut(s) 1008, 1042
BcoDI GTCTC 4 cut(s) 167, 311, 378, 551
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 6 cut(s) 602, 722, 900, 1269, 1292, 1526
BisI GCNGC 3 cut(s) 616, 772, 1190
BlnI CCTAGG 1 cut(s) 899
BlsI GCNGC 3 cut(s) 617, 773, 1191
BmcAI AGTACT 1 cut(s) 1400
BmsI GCATC 3 cut(s) 14, 673, 1105
BpiI GAAGAC 3 cut(s) 232, 503, 668
Bpu10I CCTNAGC 1 cut(s) 1319
BpuEI CTTGAG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 1113
BsaHI GRCGYC 2 cut(s) 387, 1015
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 899, 929
BsaWI WCCGGW 1 cut(s) 976
Bsc4I CCNNNNNNNGG 1 cut(s) 1156
Bse118I RCCGGY 2 cut(s) 257, 1156
Bse1I ACTGG 2 cut(s) 1082, 1197
Bse21I CCTNAGG 1 cut(s) 1350
Bse3DI GCAATG 1 cut(s) 805
BseAI TCCGGA 1 cut(s) 976
BseCI ATCGAT 1 cut(s) 1113
BseDI CCNNGG 2 cut(s) 899, 929
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 1156
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 3 cut(s) 1341, 1425, 1461
BseNI ACTGG 2 cut(s) 1082, 1197
BseXI GCAGC 3 cut(s) 602, 758, 1176
BshFI GGCC 3 cut(s) 639, 1216, 1263
BshVI ATCGAT 1 cut(s) 1113
BsiSI CCGG 3 cut(s) 258, 977, 1157
BslFI GGGAC 2 cut(s) 907, 947
BslI CCNNNNNNNGG 1 cut(s) 1156
BsmAI GTCTC 4 cut(s) 167, 311, 378, 551
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 907, 947
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 3 cut(s) 639, 1216, 1263
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 1349, 1580
Bsp13I TCCGGA 1 cut(s) 976
Bsp143I GATC 5 cut(s) 718, 751, 1019, 1144, 1166
BspACI CCGC 2 cut(s) 94, 1087
BspANI GGCC 3 cut(s) 639, 1216, 1263
BspCNI CTCAG 3 cut(s) 1342, 1426, 1462
BspDI ATCGAT 1 cut(s) 1113
BspEI TCCGGA 1 cut(s) 976
BspPI GGATC 2 cut(s) 759, 1014
BspQI GCTCTTC 1 cut(s) 1179
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 805
BsrFI RCCGGY 2 cut(s) 257, 1156
BsrI ACTGG 2 cut(s) 1082, 1197
BssAI RCCGGY 2 cut(s) 257, 1156
BssECI CCNNGG 2 cut(s) 899, 929
BssMI GATC 5 cut(s) 718, 751, 1019, 1144, 1166
BssNI GRCGYC 2 cut(s) 387, 1015
BssSI CACGAG 1 cut(s) 622
BssT1I CCWWGG 2 cut(s) 899, 929
Bst2BI CACGAG 1 cut(s) 622
Bst4CI ACNGT 4 cut(s) 514, 591, 658, 707
Bst6I CTCTTC 3 cut(s) 690, 1179, 1408
BstACI GRCGYC 2 cut(s) 387, 1015
BstAPI GCANNNNNTGC 2 cut(s) 699, 804
BstC8I GCNNGC 3 cut(s) 613, 1223, 1517
BstDEI CTNAG 6 cut(s) 274, 1319, 1350, 1434, 1470, 1500
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 5 cut(s) 721, 754, 1022, 1147, 1169
BstMAI GTCTC 4 cut(s) 167, 311, 378, 551
BstMBI GATC 5 cut(s) 718, 751, 1019, 1144, 1166
BstMWI GCNNNNNNNGC 7 cut(s) 615, 645, 699, 804, 1222, 1227, 1505
BstNSI RCATGY 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 602, 758, 1176
BstV2I GAAGAC 3 cut(s) 232, 503, 668
Bsu15I ATCGAT 1 cut(s) 1113
Bsu36I CCTNAGG 1 cut(s) 1350
BsuRI GGCC 3 cut(s) 639, 1216, 1263
BsuTUI ATCGAT 1 cut(s) 1113
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 1089, 1204
Cac8I GCNNGC 3 cut(s) 613, 1223, 1517
CfoI GCGC 1 cut(s) 611
Cfr10I RCCGGY 2 cut(s) 257, 1156
ClaI ATCGAT 1 cut(s) 1113
CseI GACGC 2 cut(s) 395, 1023
Csp6I GTAC 4 cut(s) 654, 1037, 1258, 1399
CviAII CATG 7 cut(s) 304, 401, 672, 764, 881, 1120, 1314
CviQI GTAC 4 cut(s) 654, 1037, 1258, 1399
DdeI CTNAG 6 cut(s) 274, 1319, 1350, 1434, 1470, 1500
DpnI GATC 5 cut(s) 720, 753, 1021, 1146, 1168
DpnII GATC 5 cut(s) 718, 751, 1019, 1144, 1166
DraI TTTAAA 1 cut(s) 1059
Eam1104I CTCTTC 3 cut(s) 690, 1179, 1408
EarI CTCTTC 3 cut(s) 690, 1179, 1408
Eco130I CCWWGG 2 cut(s) 899, 929
Eco24I GRGCYC 2 cut(s) 1349, 1580
Eco31I GGTCTC 1 cut(s) 551
Eco81I CCTNAGG 1 cut(s) 1350
EcoT14I CCWWGG 2 cut(s) 899, 929
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 2 cut(s) 1349, 1580
ErhI CCWWGG 2 cut(s) 899, 929
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 7 cut(s) 307, 404, 675, 767, 884, 1123, 1317
FalI AAGNNNNNCTT 2 cut(s) 1176, 1208
FaqI GGGAC 2 cut(s) 907, 947
FatI CATG 7 cut(s) 303, 400, 671, 763, 880, 1119, 1313
FauI CCCGC 1 cut(s) 101
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 3 cut(s) 616, 772, 1190
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 2 cut(s) 1349, 1580
Fsp4HI GCNGC 3 cut(s) 616, 772, 1190
FspBI CTAG 6 cut(s) 602, 722, 900, 1269, 1292, 1526
GlaI GCGC 1 cut(s) 610
GluI GCNGC 3 cut(s) 616, 772, 1190
HaeIII GGCC 3 cut(s) 639, 1216, 1263
HapII CCGG 3 cut(s) 258, 977, 1157
HgaI GACGC 2 cut(s) 395, 1023
HhaI GCGC 1 cut(s) 611
Hin1I GRCGYC 2 cut(s) 387, 1015
Hin1II CATG 7 cut(s) 307, 404, 675, 767, 884, 1123, 1317
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HindIII AAGCTT 2 cut(s) 123, 1448
HinfI GANTC 7 cut(s) 141, 218, 682, 727, 895, 989, 1415
HpaII CCGG 3 cut(s) 258, 977, 1157
HphI GGTGA 2 cut(s) 145, 530
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 9 cut(s) 355, 556, 681, 732, 1144, 1338, 1414, 1435, 1550
Hpy188III TCNNGA 3 cut(s) 202, 722, 977
Hpy8I GTNNAC 1 cut(s) 583
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 5 cut(s) 124, 173, 400, 1117, 1274
HpyCH4III ACNGT 4 cut(s) 514, 591, 658, 707
HpyCH4IV ACGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 7 cut(s) 615, 645, 699, 804, 1222, 1227, 1505
HpyF3I CTNAG 6 cut(s) 274, 1319, 1350, 1434, 1470, 1500
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 2 cut(s) 387, 1015
Hsp92II CATG 7 cut(s) 307, 404, 675, 767, 884, 1123, 1317
HspAI GCGC 1 cut(s) 609
Kpn2I TCCGGA 1 cut(s) 976
Kzo9I GATC 5 cut(s) 718, 751, 1019, 1144, 1166
LguI GCTCTTC 1 cut(s) 1179
Lsp1109I GCAGC 3 cut(s) 602, 758, 1176
LweI GCATC 3 cut(s) 14, 673, 1105
MaeI CTAG 6 cut(s) 602, 722, 900, 1269, 1292, 1526
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 1284, 1492
MalI GATC 5 cut(s) 720, 753, 1021, 1146, 1168
MboI GATC 5 cut(s) 718, 751, 1019, 1144, 1166
MfeI CAATTG 1 cut(s) 1151
MhlI GDGCHC 2 cut(s) 1349, 1580
MlyI GAGTC 3 cut(s) 676, 889, 998
MmeI TCCRAC 1 cut(s) 1374
MnlI CCTC 8 cut(s) 306, 618, 650, 886, 1120, 1206, 1302, 1345
Mph1103I ATGCAT 1 cut(s) 305
MroI TCCGGA 1 cut(s) 976
MseI TTAA 5 cut(s) 1050, 1058, 1239, 1250, 1326
MslI CAYNNNNRTG 1 cut(s) 885
MspI CCGG 3 cut(s) 258, 977, 1157
MunI CAATTG 1 cut(s) 1151
Mva1269I GAATGC 1 cut(s) 305
MwoI GCNNNNNNNGC 7 cut(s) 615, 645, 699, 804, 1222, 1227, 1505
NdeII GATC 5 cut(s) 718, 751, 1019, 1144, 1166
NlaIII CATG 7 cut(s) 307, 404, 675, 767, 884, 1123, 1317
NmeAIII GCCGAG 1 cut(s) 1242
NmuCI GTSAC 2 cut(s) 1284, 1492
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 4 cut(s) 141, 218, 727, 1415
PflFI GACNNNGTC 1 cut(s) 1282
PkrI GCNGC 3 cut(s) 617, 773, 1191
PleI GAGTC 3 cut(s) 676, 889, 997
PpsI GAGTC 3 cut(s) 676, 889, 997
PsiI TTATAA 2 cut(s) 339, 948
PsyI GACNNNGTC 1 cut(s) 1282
RsaI GTAC 4 cut(s) 655, 1038, 1259, 1400
RsaNI GTAC 4 cut(s) 654, 1037, 1258, 1399
RseI CAYNNNNRTG 1 cut(s) 885
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 5 cut(s) 1050, 1058, 1239, 1250, 1326
SatI GCNGC 3 cut(s) 616, 772, 1190
Sau3AI GATC 5 cut(s) 718, 751, 1019, 1144, 1166
ScaI AGTACT 1 cut(s) 1400
SchI GAGTC 3 cut(s) 676, 889, 998
SduI GDGCHC 2 cut(s) 1349, 1580
SfaNI GCATC 3 cut(s) 14, 673, 1105
SmiI ATTTAAAT 1 cut(s) 1059
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 601
SsiI CCGC 2 cut(s) 94, 1087
SspI AATATT 1 cut(s) 1275
SspMI CTAG 6 cut(s) 602, 722, 900, 1269, 1292, 1526
StyI CCWWGG 2 cut(s) 899, 929
SwaI ATTTAAAT 1 cut(s) 1059
TaaI ACNGT 4 cut(s) 514, 591, 658, 707
TaiI ACGT 1 cut(s) 32
TaqI TCGA 6 cut(s) 213, 570, 667, 954, 964, 1113
TatI WGTACW 1 cut(s) 1398
TfiI GAWTC 4 cut(s) 141, 218, 727, 1415
Tru1I TTAA 5 cut(s) 1050, 1058, 1239, 1250, 1326
Tru9I TTAA 5 cut(s) 1050, 1058, 1239, 1250, 1326
TscAI CASTG 2 cut(s) 1089, 1204
TseFI GTSAC 2 cut(s) 1284, 1492
TseI GCWGC 3 cut(s) 615, 771, 1189
Tsp45I GTSAC 2 cut(s) 1284, 1492
TspDTI ATGAA 5 cut(s) 294, 417, 780, 1136, 1407
TspRI CASTG 2 cut(s) 1089, 1204
Tth111I GACNNNGTC 1 cut(s) 1282
XapI RAATTY 3 cut(s) 1054, 1077, 1245
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 1 cut(s) 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XmaJI CCTAGG 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 6 cut(s) 602, 722, 900, 1269, 1292, 1526
ZrmI AGTACT 1 cut(s) 1400
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.