pycom05g02060

Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
2378503 .. 2382081
3579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02060.6

Sequence Viewer

Length: 1767 bp
ATGGATACCAAAGGAAGGCTTATTGCAGGTTCTCACAATAGGAATGAGTTTGTTCTCATCAATGCTGATGAGGTTTCAAGAGTAACATCTGTTAAAGAACTCAGTGGGCAGATTTGCCAGATCTGTGGAGATGAGATTGAGATTACAGTGGATGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTCCCCGTTTGTAGATCTTGCTATGAGTACGAAAGACGCGAGGGCAATCAAGCTTGCCCACAATGCAAAACCCGATACAAGCGCATCAAAGGGAGTCCAAGAGTTGAAGGCGACGAAGAAGAGGATGACATTGATGATTTGGAGAATGAGTTTGATATTGCAAGCAATGACAAGAGCGATCCTCACAGCATTGCTGAGGCAGTGCTGGCTGCTCGCCTTAACATTGGACGGGGTTCCCACATCAATGGTTCAGGGATTAGCACACCTGCAGAGTTCGACTCTGCCTCTGTTGCTTCCGAGATCCCTTTGCTGACCTATGGCCAAGAGGATGTTGGAATTGCCTCTGATAAGCATGCTCTTATTGTTCCTCCATTTATGAGTCGCGGAAAACGAGTTCATCCAATGCCATCTTCTGATCCCTCTATGTCCTTTCCACCGAGGCCCATGGATCCTAAGAAAGACTTAGCTGTGTATGGTTATGGAACTGTTGCATGGAAGGAGAGAATGGAGGACTGGAAGAAGAAGCAAAATGAAAAACTTCAGGTGGTGAAGCACCAAGGAGGAAATAATGGTGGAGATAATAATGGAGAGCCGGATGATCCTGATTTACCAAAGATGGATGAAGGCAGGCAGCCGCTTTCGAGGAAGTTGCCTATTTCTTCGAGCAAGATAAATCCTTATAGGATGGTAATCTTACTCCGTCTTACAGTTCTTGGCCTCTTTTTTCACTATAGAATTCTCCACCCGGTCAACAATGCCTATGGACTCTGGTTAACTTCTATAATATGTGAGATTTGGTTTGCCATGTCATGGATATTGGATCAGTTTCCTAAGTGGTATCCAATTGAGAGAGAAACATACCTTGATCGATTATCACTGAGGTATGAGAAAGAAGGGAAGCCATCTGAGTTGGCTGATCTAGATGTGTTTGTTAGTACTGTTGATCCTATGAAGGAACCTCCACTTATCACAGCAAACACGGTTCTGTCCATCCTTGCCGTAGATTATCCGGTTGACAAAGTTGCATGTTACGTATCAGATGATGGTGCTGCAATGCTTACGTTTGAAGCCCTCTCAGAGACATCTGAGTTTGCACGAAAGTGGGTTCCATTCTGCAAGAAGTACAGCATTGAACCCCGTGCCCCAGAGTGGTATTTTGTTCAAAAAGTTGACTATCTGAGAGACAAAGTTGATCCGACATTTGTTAGGGAACGTCGAGCCATTAAGAGGGAGTATGAAGAGTTTAAGGTTCGGATAAATTTGTTGGTCGCAACAGCGCAGAAAGTCCCTGAGGAGGGTTGGACAATGCAGGACGGGACTCCATGGCCTGGAAATAATGTGAGCGATCATCCTGGGATGATTCAGGTTTTCCTTGGTCAAAATGGGGTTCGTGATGTAGAAGGAAATGAATTACCACGTCTGGTTTATGTGTCTCGTGAAAAGAGACCGGGTTTTGACCATCACAAGAAAGCTGGAGCTATGAATTCTCTGGTGCGGGTATCAGCAATCATCTCAAATGCTCCTTACATACTGAATGTTGACTGTGATCAATCCAATAAACAACAGCAAAGCTCTTCGTGA

Protein Analysis

589

Amino Acids

66.42

Weight (kDa)

5.35

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 2 cut(s) 17, 460
AccB7I CCANNNNNTGG 2 cut(s) 996, 1514
AccII CGCG 2 cut(s) 225, 570
AciI CCGC 3 cut(s) 570, 821, 1681
AclWI GGATC 9 cut(s) 359, 481, 596, 629, 642, 779, 1014, 1124, 1373
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 3 cut(s) 921, 1444, 1669
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 3 cut(s) 215, 1123, 1310
AfiI CCNNNNNNNGG 7 cut(s) 15, 996, 1335, 1413, 1480, 1481, 1514
AgsI TTSAA 5 cut(s) 78, 293, 1253, 1319, 1349
AjiI CACGTC 1 cut(s) 1604
AjnI CCWGG 2 cut(s) 1513, 1537
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AleI CACNNNNGTG 1 cut(s) 1285
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
AluBI AGCT 5 cut(s) 239, 653, 1658, 1664, 1758
AluI AGCT 5 cut(s) 239, 653, 1658, 1664, 1758
Alw26I GTCTC 4 cut(s) 1259, 1362, 1623, 1624
AlwI GGATC 9 cut(s) 359, 481, 596, 629, 642, 779, 1014, 1124, 1373
AoxI GGCC 4 cut(s) 505, 626, 901, 1511
ApeKI GCWGC 3 cut(s) 395, 817, 1235
ApoI RAATTY 3 cut(s) 921, 1444, 1669
Asp700I GAANNNNTTC 1 cut(s) 723
AspLEI GCGC 2 cut(s) 270, 1465
AspS9I GGNCC 1 cut(s) 627
AsuC2I CCSGG 2 cut(s) 932, 1635
AsuHPI GGTGA 1 cut(s) 745
AxyI CCTNAGG 1 cut(s) 1476
BaeGI GKGCMC 1 cut(s) 1330
BalI TGGCCA 1 cut(s) 507
BamHI GGATCC 1 cut(s) 634
BauI CACGAG 1 cut(s) 1620
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 382, 829, 1222
BccI CCATC 8 cut(s) 146, 601, 796, 865, 1096, 1184, 1223, 1653
BceAI ACGGC 1 cut(s) 1169
BcgI CGANNNNNNTGC 2 cut(s) 817, 851
BciT130I CCWGG 2 cut(s) 1515, 1539
BciVI GTATCC 1 cut(s) 1035
BclI TGATCA 1 cut(s) 1732
BcnI CCSGG 2 cut(s) 932, 1635
BcoDI GTCTC 4 cut(s) 1259, 1362, 1623, 1624
BfaI CTAG 1 cut(s) 1106
BfmI CTRYAG 2 cut(s) 453, 916
BfuAI ACCTGC 2 cut(s) 17, 460
BfuI GTATCC 1 cut(s) 1035
BglII AGATCT 2 cut(s) 120, 200
BisI GCNGC 4 cut(s) 396, 818, 821, 1236
BlsI GCNGC 4 cut(s) 397, 819, 822, 1237
BmcAI AGTACT 1 cut(s) 1123
Bme1390I CCNGG 4 cut(s) 932, 1515, 1539, 1635
BmgBI CACGTC 1 cut(s) 1604
BmgT120I GGNCC 1 cut(s) 627
BmiI GGNNCC 5 cut(s) 159, 421, 636, 1143, 1293
BmrFI CCNGG 4 cut(s) 932, 1515, 1539, 1635
BmsI GCATC 1 cut(s) 279
BplI GAGNNNNNCTC 4 cut(s) 352, 384, 449, 481
BpmI CTGGAG 1 cut(s) 1680
Bpu10I CCTNAGC 1 cut(s) 381
BpuMI CCSGG 2 cut(s) 932, 1635
Bsa29I ATCGAT 1 cut(s) 1054
BsaAI YACGTR 1 cut(s) 1219
BsaBI GATNNNNATC 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 1624
BsaJI CCNNGG 6 cut(s) 623, 630, 742, 1508, 1538, 1558
BsaWI WCCGGW 1 cut(s) 1195
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 7 cut(s) 15, 996, 1335, 1413, 1480, 1481, 1514
Bse1I ACTGG 1 cut(s) 704
Bse21I CCTNAGG 1 cut(s) 1476
Bse3DI GCAATG 4 cut(s) 181, 358, 375, 1245
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 2 cut(s) 1515, 1539
BseCI ATCGAT 1 cut(s) 1054
BseDI CCNNGG 6 cut(s) 623, 630, 742, 1508, 1538, 1558
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 7 cut(s) 15, 996, 1335, 1413, 1480, 1481, 1514
BseMI GCAATG 4 cut(s) 181, 358, 375, 1245
BseMII CTCAG 8 cut(s) 115, 372, 1055, 1083, 1263, 1275, 1355, 1467
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 1 cut(s) 1493
BseSI GKGCMC 1 cut(s) 1330
BseXI GCAGC 3 cut(s) 382, 829, 1222
Bsh1236I CGCG 2 cut(s) 225, 570
BshFI GGCC 4 cut(s) 507, 628, 903, 1513
BshVI ATCGAT 1 cut(s) 1054
BsiSI CCGG 4 cut(s) 779, 932, 1196, 1634
BslFI GGGAC 2 cut(s) 1457, 1516
BslI CCNNNNNNNGG 7 cut(s) 15, 996, 1335, 1413, 1480, 1481, 1514
BsmAI GTCTC 4 cut(s) 1259, 1362, 1623, 1624
BsmFI GGGAC 2 cut(s) 1457, 1516
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 4 cut(s) 507, 628, 903, 1513
Bso31I GGTCTC 1 cut(s) 1624
Bsp1286I GDGCHC 1 cut(s) 1330
Bsp19I CCATGG 2 cut(s) 630, 1508
BspACI CCGC 3 cut(s) 570, 821, 1681
BspANI GGCC 4 cut(s) 507, 628, 903, 1513
BspCNI CTCAG 8 cut(s) 114, 373, 1056, 1084, 1264, 1274, 1356, 1468
BspDI ATCGAT 1 cut(s) 1054
BspFNI CGCG 2 cut(s) 225, 570
BspLI GGNNCC 5 cut(s) 159, 421, 636, 1143, 1293
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 2 cut(s) 17, 460
BspPI GGATC 9 cut(s) 359, 481, 596, 629, 642, 779, 1014, 1124, 1373
BspTNI GGTCTC 1 cut(s) 1624
BsrDI GCAATG 4 cut(s) 181, 358, 375, 1245
BsrI ACTGG 1 cut(s) 704
BssECI CCNNGG 6 cut(s) 623, 630, 742, 1508, 1538, 1558
BssSI CACGAG 1 cut(s) 1620
BssT1I CCWWGG 4 cut(s) 630, 742, 1508, 1558
Bst2BI CACGAG 1 cut(s) 1620
Bst2UI CCWGG 2 cut(s) 1515, 1539
Bst4CI ACNGT 6 cut(s) 148, 673, 895, 1126, 1168, 1730
Bst6I CTCTTC 2 cut(s) 300, 1419
BstBAI YACGTR 1 cut(s) 1219
BstC8I GCNNGC 7 cut(s) 172, 241, 349, 393, 400, 540, 815
BstDSI CCRYGG 2 cut(s) 630, 1508
BstFNI CGCG 2 cut(s) 225, 570
BstHHI GCGC 2 cut(s) 270, 1465
BstMAI GTCTC 4 cut(s) 1259, 1362, 1623, 1624
BstMWI GCNNNNNNNGC 3 cut(s) 249, 392, 476
BstNI CCWGG 2 cut(s) 1515, 1539
BstNSI RCATGY 2 cut(s) 542, 1215
BstSCI CCNGG 4 cut(s) 930, 1513, 1537, 1633
BstSFI CTRYAG 2 cut(s) 453, 916
BstSLI GKGCMC 1 cut(s) 1330
BstSNI TACGTA 1 cut(s) 1219
BstUI CGCG 2 cut(s) 225, 570
BstV1I GCAGC 3 cut(s) 382, 829, 1222
BstX2I RGATCY 4 cut(s) 120, 200, 486, 634
BstXI CCANNNNNNTGG 2 cut(s) 125, 431
BstYI RGATCY 4 cut(s) 120, 200, 486, 634
Bsu15I ATCGAT 1 cut(s) 1054
Bsu36I CCTNAGG 1 cut(s) 1476
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 4 cut(s) 507, 628, 903, 1513
BsuTUI ATCGAT 1 cut(s) 1054
BtgI CCRYGG 2 cut(s) 630, 1508
BtrI CACGTC 1 cut(s) 1604
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 4 cut(s) 109, 153, 393, 1061
BveI ACCTGC 2 cut(s) 17, 460
Cac8I GCNNGC 7 cut(s) 172, 241, 349, 393, 400, 540, 815
CfoI GCGC 2 cut(s) 270, 1465
Cfr13I GGNCC 1 cut(s) 627
ClaI ATCGAT 1 cut(s) 1054
CseI GACGC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 214, 1122, 1309
CviAII CATG 7 cut(s) 539, 631, 678, 991, 996, 1212, 1509
CviQI GTAC 3 cut(s) 214, 1122, 1309
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 300, 1419
EarI CTCTTC 2 cut(s) 300, 1419
Eco105I TACGTA 1 cut(s) 1219
Eco130I CCWWGG 4 cut(s) 630, 742, 1508, 1558
Eco31I GGTCTC 1 cut(s) 1624
Eco57I CTGAAG 1 cut(s) 710
Eco81I CCTNAGG 1 cut(s) 1476
EcoRI GAATTC 2 cut(s) 921, 1669
EcoRII CCWGG 2 cut(s) 1513, 1537
EcoT14I CCWWGG 4 cut(s) 630, 742, 1508, 1558
ErhI CCWWGG 4 cut(s) 630, 742, 1508, 1558
FaeI CATG 7 cut(s) 542, 634, 681, 994, 999, 1215, 1512
FalI AAGNNNNNCTT 3 cut(s) 35, 632, 664
FaqI GGGAC 2 cut(s) 1457, 1516
FatI CATG 7 cut(s) 538, 630, 677, 990, 995, 1211, 1508
FauI CCCGC 1 cut(s) 1674
FbaI TGATCA 1 cut(s) 1732
Fnu4HI GCNGC 4 cut(s) 396, 818, 821, 1236
Fsp4HI GCNGC 4 cut(s) 396, 818, 821, 1236
FspBI CTAG 1 cut(s) 1106
GlaI GCGC 2 cut(s) 269, 1464
GluI GCNGC 4 cut(s) 396, 818, 821, 1236
GsuI CTGGAG 1 cut(s) 1680
HaeIII GGCC 4 cut(s) 507, 628, 903, 1513
HapII CCGG 4 cut(s) 779, 932, 1196, 1634
HgaI GACGC 1 cut(s) 231
HhaI GCGC 2 cut(s) 270, 1465
Hin1II CATG 7 cut(s) 542, 634, 681, 994, 999, 1215, 1512
Hin6I GCGC 2 cut(s) 268, 1463
HinP1I GCGC 2 cut(s) 268, 1463
HincII GTYRAC 5 cut(s) 937, 960, 1201, 1357, 1726
HindII GTYRAC 5 cut(s) 937, 960, 1201, 1357, 1726
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 6 cut(s) 280, 464, 565, 951, 1504, 1546
HpaI GTTAAC 1 cut(s) 960
HpaII CCGG 4 cut(s) 779, 932, 1196, 1634
HphI GGTGA 1 cut(s) 745
Hpy166II GTNNAC 5 cut(s) 937, 960, 1201, 1357, 1726
Hpy188III TCNNGA 6 cut(s) 78, 788, 1106, 1577, 1622, 1764
Hpy8I GTNNAC 5 cut(s) 937, 960, 1201, 1357, 1726
Hpy99I CGWCG 2 cut(s) 302, 1404
HpyAV CCTTC 7 cut(s) 9, 287, 676, 803, 1073, 1132, 1580
HpyCH4III ACNGT 6 cut(s) 148, 673, 895, 1126, 1168, 1730
HpyCH4IV ACGT 4 cut(s) 1218, 1247, 1399, 1603
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 392, 476
HpySE526I ACGT 4 cut(s) 1218, 1247, 1399, 1603
Hsp92II CATG 7 cut(s) 542, 634, 681, 994, 999, 1215, 1512
HspAI GCGC 2 cut(s) 268, 1463
Ksp22I TGATCA 1 cut(s) 1732
KspAI GTTAAC 1 cut(s) 960
LmnI GCTCC 3 cut(s) 157, 1661, 1711
Lsp1109I GCAGC 3 cut(s) 382, 829, 1222
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 1106
MaeII ACGT 4 cut(s) 1218, 1247, 1399, 1603
MaeIII GTNAC 2 cut(s) 82, 1214
MboII GAAGA 8 cut(s) 314, 317, 588, 715, 718, 837, 1436, 1752
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 4 cut(s) 120, 200, 486, 634
MhlI GDGCHC 1 cut(s) 1330
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 6 cut(s) 522, 921, 1029, 1444, 1595, 1669
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 5 cut(s) 289, 458, 574, 945, 1498
MmeI TCCRAC 3 cut(s) 499, 1406, 1466
Mox20I TGGCCA 1 cut(s) 507
MroXI GAANNNNTTC 1 cut(s) 723
MscI TGGCCA 1 cut(s) 507
MseI TTAA 5 cut(s) 93, 405, 959, 1410, 1431
MslI CAYNNNNRTG 2 cut(s) 429, 1285
Msp20I TGGCCA 1 cut(s) 507
MspI CCGG 4 cut(s) 779, 932, 1196, 1634
MspR9I CCNGG 4 cut(s) 932, 1515, 1539, 1635
MunI CAATTG 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 2 cut(s) 1515, 1539
MvnI CGCG 2 cut(s) 225, 570
MwoI GCNNNNNNNGC 3 cut(s) 249, 392, 476
NciI CCSGG 2 cut(s) 932, 1635
NcoI CCATGG 2 cut(s) 630, 1508
NlaIII CATG 7 cut(s) 542, 634, 681, 994, 999, 1215, 1512
NlaIV GGNNCC 5 cut(s) 159, 421, 636, 1143, 1293
NspI RCATGY 2 cut(s) 542, 1215
OliI CACNNNNGTG 1 cut(s) 1285
PaeI GCATGC 1 cut(s) 542
PaqCI CACCTGC 1 cut(s) 460
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 574
PctI GAATGC 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 1546
PflMI CCANNNNNTGG 2 cut(s) 996, 1514
PkrI GCNGC 4 cut(s) 397, 819, 822, 1237
PleI GAGTC 5 cut(s) 288, 458, 573, 945, 1498
PpsI GAGTC 5 cut(s) 288, 458, 573, 945, 1498
Ppu21I YACGTR 1 cut(s) 1219
Psp6I CCWGG 2 cut(s) 1513, 1537
PspGI CCWGG 2 cut(s) 1513, 1537
PspN4I GGNNCC 5 cut(s) 159, 421, 636, 1143, 1293
PspPI GGNCC 1 cut(s) 627
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 4 cut(s) 120, 200, 486, 634
RsaI GTAC 3 cut(s) 215, 1123, 1310
RsaNI GTAC 3 cut(s) 214, 1122, 1309
RseI CAYNNNNRTG 2 cut(s) 429, 1285
SaqAI TTAA 5 cut(s) 93, 405, 959, 1410, 1431
SatI GCNGC 4 cut(s) 396, 818, 821, 1236
Sau96I GGNCC 1 cut(s) 627
ScaI AGTACT 1 cut(s) 1123
SchI GAGTC 5 cut(s) 289, 458, 574, 945, 1498
ScrFI CCNGG 4 cut(s) 932, 1515, 1539, 1635
SduI GDGCHC 1 cut(s) 1330
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 453, 916
SmiMI CAYNNNNRTG 2 cut(s) 429, 1285
SnaBI TACGTA 1 cut(s) 1219
SphI GCATGC 1 cut(s) 542
Sse9I AATT 6 cut(s) 522, 921, 1029, 1444, 1595, 1669
SsiI CCGC 3 cut(s) 570, 821, 1681
SspMI CTAG 1 cut(s) 1106
StyD4I CCNGG 4 cut(s) 930, 1513, 1537, 1633
StyI CCWWGG 4 cut(s) 630, 742, 1508, 1558
TaaI ACNGT 6 cut(s) 148, 673, 895, 1126, 1168, 1730
TaiI ACGT 4 cut(s) 1221, 1250, 1402, 1606
TaqI TCGA 5 cut(s) 462, 827, 848, 1054, 1402
TasI AATT 6 cut(s) 522, 921, 1029, 1444, 1595, 1669
TatI WGTACW 2 cut(s) 1121, 1308
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 1 cut(s) 1546
Tru1I TTAA 5 cut(s) 93, 405, 959, 1410, 1431
Tru9I TTAA 5 cut(s) 93, 405, 959, 1410, 1431
TscAI CASTG 4 cut(s) 109, 153, 393, 1068
TseI GCWGC 3 cut(s) 395, 817, 1235
TspDTI ATGAA 8 cut(s) 192, 572, 732, 822, 1151, 1437, 1608, 1682
TspGWI ACGGA 1 cut(s) 875
TspRI CASTG 4 cut(s) 109, 153, 393, 1068
Van91I CCANNNNNTGG 2 cut(s) 996, 1514
XapI RAATTY 3 cut(s) 921, 1444, 1669
XbaI TCTAGA 1 cut(s) 1105
XceI RCATGY 2 cut(s) 542, 1215
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 1 cut(s) 1106
ZrmI AGTACT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.