Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Reverse (-)

58067146 .. 58074743

Gene Structure 7598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCCCAACTGAAATTGGAGAAGAAATTTGGGCAATCTCCTGTCTTCGTAGCCTCTGCAGTACTGGTGGATGGTGGAATTCCTCAGGACGTTAGTCCTGCATCTCTCTTGAGAGAAGCCATCCAAGTCATAAGCTGTGGTTATGAAGATAAAACAGAATGGGGAAAGGAAGTTGGCTGGATATATGGTAGTGTTACTGAGGATATTCTGACAGGATTTAAGATGCATTGCCATGGCTGGAGATCTGTTTACTGCATACCCAAGTTACCTGCTTTCAAAGGGTCAGCTCCTATTAATCTGTCAGATCGTCTCCACCAAGTTCTGCGGTGGGCACTTGGATCGGTTGAGATTTTCTTGAGTAGACATTGCCCAATCTGGTATGGATATGGGAGTGGGTTGAAATCTTTGGAGCGGTTTTCGTATATCAACTCAGTTGTATATCCTTGGACCTCCATTCCTTTGATCGTTTACTGTAGTCTGCCTGCCATCTGTCTTCTGACTGGGAAATTCATTGTCCCTGAGATAAGCAACTATGCAAGTCTTGTTTTCATGGCTCTCTTCTTATCCATAGCTGCCACCGGCATCCTCGAGATGCAATGGGGCGGTGTTGGGATAGATGACTGGTGGAGAAATGAGCAGTTTTGGGTAATTGGAGGTGCTTCATCGCATCTATTTGCTCTCTTCCAGGGTCTACTCAAGGTTTTGGCTGGTGTTAACACAAACTTCACAGTTACATCTAAGGCAGCAGATGATGGAGCATTTTCCGAACTTTACATCTTCAAGTGGACATCATTGTTGATCCCTCCTATGACTTTATTAATAATAAACATAGTGGGGGTCGTCGTTGGTATTTCAGATGCCATCAATAACGGGTATGATTCATGGGGGCCATTGTTCGGCAGACTATTTTTCGCCTTCTGGGTCATTATGCACCTCTACCCCTTCCTCAAGGGATTACTGGGTAAACAAGATCGTATGCCCACCATTATTTTGGTTTGGTCCATTCTGCTATCATCAATATTAACTCTTATGTGGGTTCGAATAAATCCATTTGTCTCAAAGGATGGCCCTGTTTTGGAGGTTTGCGGGCTAAATTGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

367

Amino Acids

40.81

Weight (kDa)

6.59

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 355	8.5e-198	Cellulose synthase
Glyco_trans_2_3	PF13632	38 - 167	2.5e-07	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	412
AccI	GTMKAC	2 cut(s)	361, 691
AciI	CCGC	4 cut(s)	325, 412, 603, 1086
AclWI	GGATC	2 cut(s)	346, 793
AcsI	RAATTY	3 cut(s)	26, 78, 506
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	896, 1075
AgsI	TTSAA	3 cut(s)	277, 400, 781
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	3 cut(s)	135, 287, 572
AluI	AGCT	3 cut(s)	135, 287, 572
Alw26I	GTCTC	2 cut(s)	314, 1060
AlwI	GGATC	2 cut(s)	346, 793
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	2 cut(s)	887, 1066
ApeKI	GCWGC	2 cut(s)	572, 743
ApoI	RAATTY	3 cut(s)	26, 78, 506
AseI	ATTAAT	2 cut(s)	294, 818
AspS9I	GGNCC	4 cut(s)	447, 887, 999, 1067
AsuII	TTCGAA	1 cut(s)	1039
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	447, 999
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	37, 485
BbvI	GCAGC	2 cut(s)	559, 755
BccI	CCATC	6 cut(s)	65, 128, 494, 746, 869, 1058
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	314, 1060
BfmI	CTRYAG	2 cut(s)	57, 472
BfuAI	ACCTGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	2 cut(s)	573, 744
BlsI	GCNGC	2 cut(s)	574, 745
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	2 cut(s)	447, 999
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	4 cut(s)	447, 887, 999, 1067
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	1 cut(s)	686
BmrI	ACTGGG	2 cut(s)	510, 968
BmsI	GCATC	6 cut(s)	110, 213, 582, 591, 676, 847
BmuI	ACTGGG	2 cut(s)	510, 968
BoxI	GACNNNNGTC	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	37, 485
BpmI	CTGGAG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	4 cut(s)	130, 376, 680, 932
BsaJI	CCNNGG	3 cut(s)	232, 443, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	896, 1075
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	4 cut(s)	69, 505, 626, 963
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	3 cut(s)	226, 364, 602
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	3 cut(s)	232, 443, 685
BseGI	GGATG	4 cut(s)	76, 120, 582, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	896, 1075
BseMI	GCAATG	3 cut(s)	226, 364, 602
BseMII	CTCAG	4 cut(s)	98, 189, 444, 510
BseNI	ACTGG	4 cut(s)	69, 505, 626, 963
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	559, 755
BshFI	GGCC	2 cut(s)	889, 1068
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	896, 1075
BsmAI	GTCTC	2 cut(s)	314, 1060
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	889, 1068
BsoBI	CYCGRG	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	4 cut(s)	325, 412, 603, 1086
BspANI	GGCC	2 cut(s)	889, 1068
BspCNI	CTCAG	4 cut(s)	97, 190, 443, 511
BspLI	GGNNCC	1 cut(s)	888
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	346, 793
BspT104I	TTCGAA	1 cut(s)	1039
BsrBI	CCGCTC	1 cut(s)	412
BsrDI	GCAATG	3 cut(s)	226, 364, 602
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	4 cut(s)	69, 505, 626, 963
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	3 cut(s)	232, 443, 685
BssMI	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
BssT1I	CCWWGG	2 cut(s)	232, 443
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	2 cut(s)	473, 730
Bst6I	CTCTTC	2 cut(s)	563, 686
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	2 cut(s)	483, 1088
BstDEI	CTNAG	5 cut(s)	84, 198, 430, 519, 738
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	4 cut(s)	76, 120, 582, 1069
BstKTI	GATC	6 cut(s)	245, 307, 341, 465, 801, 973
BstMAI	GTCTC	2 cut(s)	314, 1060
BstMBI	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
BstNI	CCWGG	1 cut(s)	686
BstPAI	GACNNNNGTC	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	2 cut(s)	57, 472
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	559, 755
BstV2I	GAAGAC	2 cut(s)	37, 485
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	1 cut(s)	242
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	889, 1068
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	4 cut(s)	76, 120, 582, 1069
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	483, 1088
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	4 cut(s)	447, 887, 999, 1067
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	3 cut(s)	233, 550, 882
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	5 cut(s)	84, 198, 430, 519, 738
DpnI	GATC	6 cut(s)	244, 306, 340, 464, 800, 972
DpnII	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
Eam1104I	CTCTTC	2 cut(s)	563, 686
EarI	CTCTTC	2 cut(s)	563, 686
Eco130I	CCWWGG	2 cut(s)	232, 443
Eco47I	GGWCC	2 cut(s)	447, 999
Eco81I	CCTNAGG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	2 cut(s)	232, 443
EcoT22I	ATGCAT	1 cut(s)	228
ErhI	CCWWGG	2 cut(s)	232, 443
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	3 cut(s)	236, 553, 885
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	232, 549, 881
FauI	CCCGC	1 cut(s)	1079
FblI	GTMKAC	2 cut(s)	361, 691
Fnu4HI	GCNGC	2 cut(s)	573, 744
FokI	GGATG	4 cut(s)	83, 107, 569, 1076
Fsp4HI	GCNGC	2 cut(s)	573, 744
GluI	GCNGC	2 cut(s)	573, 744
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	889, 1068
HapII	CCGG	1 cut(s)	579
Hin1II	CATG	3 cut(s)	236, 553, 885
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	1 cut(s)	878
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	1 cut(s)	579
Hpy166II	GTNNAC	7 cut(s)	250, 362, 469, 692, 715, 786, 965
Hpy188I	TCNGA	5 cut(s)	210, 304, 498, 766, 856
Hpy188III	TCNNGA	4 cut(s)	86, 109, 355, 589
Hpy8I	GTNNAC	7 cut(s)	250, 362, 469, 692, 715, 786, 965
Hpy99I	CGWCG	1 cut(s)	845
HpyAV	CCTTC	2 cut(s)	925, 952
HpyCH4III	ACNGT	2 cut(s)	473, 730
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	7 cut(s)	59, 101, 226, 255, 536, 595, 931
HpyF3I	CTNAG	5 cut(s)	84, 198, 430, 519, 738
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	236, 553, 885
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
LmnI	GCTCC	3 cut(s)	292, 409, 755
Lsp1109I	GCAGC	2 cut(s)	559, 755
LweI	GCATC	6 cut(s)	110, 213, 582, 591, 676, 847
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	193, 264, 730
MalI	GATC	6 cut(s)	244, 306, 340, 464, 800, 972
MbiI	CCGCTC	1 cut(s)	412
MboI	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
MboII	GAAGA	7 cut(s)	34, 37, 158, 485, 550, 673, 769
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	6 cut(s)	14, 26, 78, 506, 648, 1093
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	5 cut(s)	219, 294, 714, 818, 1022
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	686
MvaI	CCWGG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
NlaIII	CATG	3 cut(s)	236, 553, 885
NlaIV	GGNNCC	1 cut(s)	888
NsiI	ATGCAT	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	1039
PaeR7I	CTCGAG	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	878
PkrI	GCNGC	2 cut(s)	574, 745
PshAI	GACNNNNGTC	1 cut(s)	93
PshBI	ATTAAT	2 cut(s)	294, 818
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	888
PspPI	GGNCC	4 cut(s)	447, 887, 999, 1067
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	5 cut(s)	219, 294, 714, 818, 1022
SatI	GCNGC	2 cut(s)	573, 744
Sau3AI	GATC	6 cut(s)	242, 304, 338, 462, 798, 970
Sau96I	GGNCC	4 cut(s)	447, 887, 999, 1067
ScaI	AGTACT	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	6 cut(s)	110, 213, 582, 591, 676, 847
SfcI	CTRYAG	2 cut(s)	57, 472
Sfr274I	CTCGAG	1 cut(s)	587
SfuI	TTCGAA	1 cut(s)	1039
SinI	GGWCC	2 cut(s)	447, 999
SlaI	CTCGAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	5 cut(s)	109, 355, 587, 695, 947
SmoI	CTYRAG	5 cut(s)	109, 355, 587, 695, 947
Sse9I	AATT	6 cut(s)	14, 26, 78, 506, 648, 1093
SsiI	CCGC	4 cut(s)	325, 412, 603, 1086
SspI	AATATT	1 cut(s)	1020
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	2 cut(s)	232, 443
TaaI	ACNGT	2 cut(s)	473, 730
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	588, 1039
TasI	AATT	6 cut(s)	14, 26, 78, 506, 648, 1093
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	5 cut(s)	219, 294, 714, 818, 1022
Tru9I	TTAA	5 cut(s)	219, 294, 714, 818, 1022
TseI	GCWGC	2 cut(s)	572, 743
TspDTI	ATGAA	5 cut(s)	159, 499, 538, 651, 870
VpaK11BI	GGWCC	2 cut(s)	447, 999
VspI	ATTAAT	2 cut(s)	294, 818
XapI	RAATTY	3 cut(s)	26, 78, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	988
XhoI	CTCGAG	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	361, 691
ZrmI	AGTACT	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.