Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

37479907 .. 37487582

Gene Structure 7676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG307400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3294 bp

ATGAAATTTCAAGAAGATGTAAAGACAGAAACTTTTACATTGCATAGTAAGTTGTCACCGTTGTTAATGTCTTTCGGGGTTTTACAGATAAAGTCTGTGGAAGAACTGAGTGGACAAATATGTCAGATTTGTGGTGATGGGATTGAGATTACAGATGATGGAGAGATCTTTGTAGCCTGCAATGAATGTGCCTTCCCTGTATGTAGAGCCTGTTATCAGTATGAAAGAAAAGAGGGAAATCAGGCTTGTCCCCAGTGTAAAACCAGATACAAGCGCATCAAAGGTACTCCTAGGGTTGAAGGTGATGAAGAGGAAGATGATATCGATGATTTGTACAATGAGTTTTGTTATGGGAATCTTGATGCTTTGGGCTCACATCAAGTTGCTGAGGCTGTGCTGTCTTCACACCTTAATGTTGGTCGCGGTTCCCACTATAATGCCAGAATTCCCACACACACAGAACATGATTCCTCAACTCTGGGTTCTGAAATCCCACTCTTGACCTATGGCGAGGAGGATTCTGAGATATCTTCTGATCGACATGCGCTTATTGTACCTCCATATATGGGTCATGGAAACAGAGTCCATCCTGTGCCTTTTCCTGATTCATCTCCTTTGCAACCTAGACCAATGGTTCCTAAGAAAGACATTTCAGTATATGGGTATGGGAGCGTGGCTTGGAAAGATCGAATGGAAGAGTGGAAGAGAAAGCAAAATGACAAACTTCAGGTGGTAAAGCATGAAGGAGATAATGGTGGTGGAAACTTTGGTGGAAAGGAAGATGATGTTGATTTGCCCATGATGGATGAAGGCAGGCAGCCACTTTCAAGAAAGATACCCATCCCTTCAAGCAAGATAAACCCATACAGAATGATAATAATACTCCGACTTGTAATCCTTGGCTTCTTTTTCCATTATAGAATTCTCAATCCAGTGAAAGATGCATATGGCTTGTGGTTGACGTCAGTCATATGCGAGATATGGTTTGCTGTTTCATGGATTCTGGATCAGTTCCCCAAATGGTATCCAATAGAACGAGAAACGTACCTAGATCGCCTATCGCTGAGGTATGAAAAGGAAGGGAAACCATCTGAACTAGCGAGTATAGACATCTTTGTTAGTACAGTCGACCCTTTGAAAGAACCTCCACTAATCACTGCAAACACGGTCCTTTCCATCCTTGCTGTCGATTATCCAGTTGATAAAGTTGCATGTTATGTCTCGGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCTGAGACAGCTGAGTTTTCCAGGAGATGGGTCCCTTTTTGTAAGAAATATAGCATTGAGCCTCGAGCCCCAGAATGGTACTTCTGTCAGAAGATTGACTATTTGAAAAATAAGGTTCATCCTGAATTTGTTAGGGAAAGGCGTGCAATGAAGAGAGACTATGAAGAATTTAAAGTTAGGATTAATAGTTTGGTTGCCATGGCACAAAAGGTTCCGGAGGATGGTTGGACAATGCAGGATGGTACTCCCTGGCCTGGGAACAATGTACGAGACCATCCTGGCATGATTCAGGTCTTTCTGGGTAACAATGGTTTTCGTGATGATGAAGGAAATGAGTTACCTCGTCTGATTTATGTTTCTCGTGAAAAGAGACCAGGATTTGATCACCATAAAAAGGCAGGTGCCATGAATGCTCTGATGCGGGTCTCTGCCGTCATCTCTAATGCTCCTTATCTTCTGAATGTTGACTGTGATCACTACATCAACAATAGCAAGGCCCTCAGAGAAGCCATGTGCTTCATGATGGACCCTACATCAGGGAAGAAAGTTTGCTATGTGCAGTTTCCCCAAAGATTTGATGGGATTGATCGTCACGATAGATACTCAAATCGGAATGTTGTATTCTTTGATATCAACATGAAAGGATTAGATGGTATACAAGGGCCAATATATGTTGGAACTGGGTGTGTTTTCAGAAGGCAAGCTCTTTATGGGTTTGATGCACCTGCCTCAAAGAAACCCCCCAGCAGAACCTGCAATTGCTGGCCAAAATGGTGCTGCCTGTGTTGTGGATCAAGAAAAAACAAGAATGCAAAGTCAAAGAAAGAGAAAAAGAAGAAATCGAAACAGAGAGAAGCATCAAAGCAGATACATGCTGTTGAAAATATTGAAGAGGGAATTGAAGAATCAATCTCTGATAAATCATCCCATATGTCCCAACTGAAATTGGAGAAGAAATTTGGGCAATCTCCTGTCTTTGTAGCCTCTGCAGTACTGGAGGATGGTGGAATTCCTCAGGACGTTAGTCCTGCATCTCTCTTGAGAGAAGCCATCCAAGTCATAAGCTGTGGTTATGAAGATAAAACAGAATGGGGAAAGGAAGTTGGCTGGATATATGGTAGTGTTACTGAGGATATTCTGACAGGATTTAAGATGCATTGCCATGGCTGGAGATCTGTTTACTGCATACCCAAGTTACCTGCTTTCAAAGGGTCAGCTCCTATTAATCTGTCAGATCGTCTCCACCAAGTTCTGCGGTGGGCACTTGGATCGGTTGAGATTTTCTTGAGTAGACATTGCCCAATCTGGTATGGATATGGGAGTGGGTTGAAATCTTTGGAGAGGTTTTCGTATATCAACTCAGTTGTATATCCTTGGACCTCCATTCCTTTGATCGTTTACTGTAGTCTGCCTGCCATCTGTCTTCTGACTGGGAAATTCATTGTCCCCGAGATAAGCAACTATGCAAGTCTTGTTTTCATGGCTCTCTTCTTATCCATAGCTGCCACCGGCATCCTCGAGATGCAATGGGGCGGTGTTGGGATAGATGACTGGTGGAGAAATGAGCAGTTTTGGGTAATTGGAGGGGCTTCATCGCATCTATTTGCTATCTTCCAGGGTCTACTCAAGGTTTTGGCTGGTGTTAACACAAACTTCACAGTTACATCTAAGGCAGCAGATGATGGAGCATTTTCCGAACTTTACATCTTCAAGTGGACATCATTGTTGATCCCTCCTATGACTTTATTAATAATAAACATAGTGGGGGTCGTCGTTGGTATTTCAGATGCCATCAATAACGGGTATGATTCATGGGGTCCATTGTTCGGCAGACTATTTTTCGCCTTCTGGGTCATTATGCACCTCTACCCCTTCCTCAAGGGATTACTGGGTAAACAAGATCGTATGCCCACCATTATTTTGGTTTGGTCCATTCTGCTATCATCAATATTAACTCTTATGTGGGTTCGAATAAATCCATTTGTCTCGAAGGATGGCCCTGTTTTGGAGGTTTGTGGGCTAAATTGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1097

Amino Acids

124.15

Weight (kDa)

6.52

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	31 - 107	2e-40	Zinc-binding RING-finger
Cellulose_synt	PF03552	369 - 1085	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	787 - 897	1.9e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1649, 1993
AasI	GACNNNNNNGTC	1 cut(s)	120
AatII	GACGTC	1 cut(s)	965
Acc36I	ACCTGC	4 cut(s)	1649, 1993, 2021, 2467
AccB1I	GGYRCC	1 cut(s)	1661
AccB7I	CCANNNNNTGG	1 cut(s)	1287
AccI	GTMKAC	4 cut(s)	1128, 1915, 2551, 2881
AccII	CGCG	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	1474
AciI	CCGC	4 cut(s)	423, 1681, 2515, 2793
AclWI	GGATC	4 cut(s)	1014, 2059, 2536, 2983
AcoI	YGGCCR	1 cut(s)	2024
AcsI	RAATTY	8 cut(s)	5, 444, 921, 1385, 1427, 2216, 2268, 2696
AcuI	CTGAAG	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	962
AfaI	GTAC	9 cut(s)	286, 335, 555, 1046, 1123, 1340, 1504, 1527, 2253
AjnI	CCWGG	6 cut(s)	1280, 1508, 1513, 1537, 1633, 2874
AluBI	AGCT	5 cut(s)	1271, 1964, 2325, 2477, 2762
AluI	AGCT	5 cut(s)	1271, 1964, 2325, 2477, 2762
Alw26I	GTCTC	8 cut(s)	1225, 1259, 1410, 1524, 1624, 1690, 2504, 3250
AlwI	GGATC	4 cut(s)	1014, 2059, 2536, 2983
AlwNI	CAGNNNCTG	1 cut(s)	2013
Ama87I	CYCGRG	3 cut(s)	1323, 2708, 2777
Aor13HI	TCCGGA	1 cut(s)	1474
AoxI	GGCC	5 cut(s)	1511, 1755, 1922, 2024, 3256
ApeKI	GCWGC	5 cut(s)	817, 1235, 2037, 2762, 2933
ApoI	RAATTY	8 cut(s)	5, 444, 921, 1385, 1427, 2216, 2268, 2696
AseI	ATTAAT	3 cut(s)	1443, 2484, 3008
AspA2I	CCTAGG	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	276, 547
AspS9I	GGNCC	9 cut(s)	1168, 1291, 1756, 1786, 1922, 2637, 3077, 3189, 3257
AsuHPI	GGTGA	4 cut(s)	48, 146, 314, 1637
AsuII	TTCGAA	1 cut(s)	3229
AvaI	CYCGRG	3 cut(s)	1323, 2708, 2777
AvaII	GGWCC	6 cut(s)	1168, 1291, 1786, 2637, 3077, 3189
AvrII	CCTAGG	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	2274
BaeGI	GKGCMC	1 cut(s)	2524
BaeI	ACNNNNGTAYC	2 cut(s)	1330, 1363
BalI	TGGCCA	1 cut(s)	2026
BanI	GGYRCC	1 cut(s)	1661
BanII	GRGCYC	2 cut(s)	374, 1330
BauI	CACGAG	1 cut(s)	1620
BbsI	GAAGAC	2 cut(s)	393, 2675
BbvCI	CCTCAGC	2 cut(s)	387, 1064
BbvI	GCAGC	5 cut(s)	829, 1222, 2024, 2749, 2945
BceAI	ACGGC	1 cut(s)	1676
BcgI	CGANNNNNNTGC	2 cut(s)	2511, 2545
BciT130I	CCWGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
BciVI	GTATCC	1 cut(s)	1035
BclI	TGATCA	2 cut(s)	1642, 1732
BcoDI	GTCTC	8 cut(s)	1225, 1259, 1410, 1524, 1624, 1690, 2504, 3250
BfaI	CTAG	4 cut(s)	291, 624, 1049, 1097
BfmI	CTRYAG	2 cut(s)	2247, 2662
BfuAI	ACCTGC	4 cut(s)	1649, 1993, 2021, 2467
BfuI	GTATCC	1 cut(s)	1035
BglII	AGATCT	2 cut(s)	165, 2432
BisI	GCNGC	5 cut(s)	818, 1236, 2038, 2763, 2934
BlnI	CCTAGG	1 cut(s)	290
BlsI	GCNGC	5 cut(s)	819, 1237, 2039, 2764, 2935
BmcAI	AGTACT	1 cut(s)	2253
Bme1390I	CCNGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
Bme18I	GGWCC	6 cut(s)	1168, 1291, 1786, 2637, 3077, 3189
BmeT110I	CYCGRG	3 cut(s)	1323, 2708, 2777
BmgT120I	GGNCC	9 cut(s)	1168, 1291, 1756, 1786, 1922, 2637, 3077, 3189, 3257
BmiI	GGNNCC	8 cut(s)	427, 636, 1292, 1293, 1473, 1663, 1788, 3078
BmrFI	CCNGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
BmrI	ACTGGG	4 cut(s)	247, 1950, 2700, 3158
BmuI	ACTGGG	4 cut(s)	247, 1950, 2700, 3158
BoxI	GACNNNNGTC	2 cut(s)	965, 2283
BpiI	GAAGAC	2 cut(s)	393, 2675
BpmI	CTGGAG	2 cut(s)	2276, 2449
Bpu10I	CCTNAGC	2 cut(s)	387, 1064
Bpu14I	TTCGAA	1 cut(s)	3229
BpuEI	CTTGAG	4 cut(s)	2320, 2566, 2870, 3122
Bsa29I	ATCGAT	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	839
BsaHI	GRCGYC	1 cut(s)	962
BsaI	GGTCTC	3 cut(s)	1524, 1624, 1690
BsaJI	CCNNGG	8 cut(s)	290, 898, 1458, 1508, 1514, 2422, 2633, 2875
BsaWI	WCCGGW	1 cut(s)	1474
Bse118I	RCCGGY	1 cut(s)	2768
Bse1I	ACTGG	8 cut(s)	253, 932, 1196, 1945, 2259, 2695, 2816, 3153
Bse21I	CCTNAGG	1 cut(s)	2274
Bse3DI	GCAATG	6 cut(s)	38, 187, 1413, 2416, 2554, 2792
Bse8I	GATNNNNATC	1 cut(s)	839
BseAI	TCCGGA	1 cut(s)	1474
BseBI	CCWGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	8 cut(s)	290, 898, 1458, 1508, 1514, 2422, 2633, 2875
BseJI	GATNNNNATC	1 cut(s)	839
BseMI	GCAATG	6 cut(s)	38, 187, 1413, 2416, 2554, 2792
BseNI	ACTGG	8 cut(s)	253, 932, 1196, 1945, 2259, 2695, 2816, 3153
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	2524
BseXI	GCAGC	5 cut(s)	829, 1222, 2024, 2749, 2945
BseYI	CCCAGC	1 cut(s)	2003
BsgI	GTGCAG	1 cut(s)	1838
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	5 cut(s)	1513, 1757, 1924, 2026, 3258
BshNI	GGYRCC	1 cut(s)	1661
BshVI	ATCGAT	1 cut(s)	324
BsiHKCI	CYCGRG	3 cut(s)	1323, 2708, 2777
BsiSI	CCGG	2 cut(s)	1475, 2769
BslFI	GGGAC	4 cut(s)	234, 1277, 2179, 2690
BsmAI	GTCTC	8 cut(s)	1225, 1259, 1410, 1524, 1624, 1690, 2504, 3250
BsmBI	CGTCTC	1 cut(s)	2504
BsmFI	GGGAC	4 cut(s)	234, 1277, 2179, 2690
BsmI	GAATGC	2 cut(s)	1675, 2074
BsnI	GGCC	5 cut(s)	1513, 1757, 1924, 2026, 3258
Bso31I	GGTCTC	3 cut(s)	1524, 1624, 1690
BsoBI	CYCGRG	3 cut(s)	1323, 2708, 2777
Bsp119I	TTCGAA	1 cut(s)	3229
Bsp1286I	GDGCHC	3 cut(s)	374, 1330, 2524
Bsp13I	TCCGGA	1 cut(s)	1474
Bsp1407I	TGTACA	1 cut(s)	333
Bsp19I	CCATGG	2 cut(s)	1458, 2422
BspACI	CCGC	4 cut(s)	423, 1681, 2515, 2793
BspANI	GGCC	5 cut(s)	1513, 1757, 1924, 2026, 3258
BspDI	ATCGAT	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	1474
BspFNI	CGCG	1 cut(s)	423
BspHI	TCATGA	1 cut(s)	1779
BspLI	GGNNCC	8 cut(s)	427, 636, 1292, 1293, 1473, 1663, 1788, 3078
BspMAI	CTGCAG	1 cut(s)	2251
BspMI	ACCTGC	4 cut(s)	1649, 1993, 2021, 2467
BspPI	GGATC	4 cut(s)	1014, 2059, 2536, 2983
BspT104I	TTCGAA	1 cut(s)	3229
BspT107I	GGYRCC	1 cut(s)	1661
BspTNI	GGTCTC	3 cut(s)	1524, 1624, 1690
BsrDI	GCAATG	6 cut(s)	38, 187, 1413, 2416, 2554, 2792
BsrFI	RCCGGY	1 cut(s)	2768
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	8 cut(s)	253, 932, 1196, 1945, 2259, 2695, 2816, 3153
BssAI	RCCGGY	1 cut(s)	2768
BssECI	CCNNGG	8 cut(s)	290, 898, 1458, 1508, 1514, 2422, 2633, 2875
BssNAI	GTATAC	1 cut(s)	1916
BssNI	GRCGYC	1 cut(s)	962
BssSI	CACGAG	1 cut(s)	1620
BssT1I	CCWWGG	5 cut(s)	290, 898, 1458, 2422, 2633
Bst1107I	GTATAC	1 cut(s)	1916
Bst2BI	CACGAG	1 cut(s)	1620
Bst2UI	CCWGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
Bst4CI	ACNGT	6 cut(s)	60, 1126, 1168, 1730, 2663, 2920
Bst6I	CTCTTC	6 cut(s)	303, 690, 698, 1406, 2145, 2753
BstACI	GRCGYC	1 cut(s)	962
BstAPI	GCANNNNNTGC	1 cut(s)	2013
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	3229
BstC8I	GCNNGC	6 cut(s)	178, 815, 1404, 1962, 2024, 2673
BstDSI	CCRYGG	2 cut(s)	1458, 2422
BstENI	CCTNNNNNAGG	1 cut(s)	1794
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	276, 547
BstMAI	GTCTC	8 cut(s)	1225, 1259, 1410, 1524, 1624, 1690, 2504, 3250
BstMWI	GCNNNNNNNGC	2 cut(s)	1670, 2013
BstNI	CCWGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
BstNSI	RCATGY	3 cut(s)	545, 1215, 2135
BstPAI	GACNNNNGTC	2 cut(s)	965, 2283
BstSCI	CCNGG	6 cut(s)	1280, 1508, 1513, 1537, 1633, 2874
BstSFI	CTRYAG	2 cut(s)	2247, 2662
BstSLI	GKGCMC	1 cut(s)	2524
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	5 cut(s)	829, 1222, 2024, 2749, 2945
BstV2I	GAAGAC	2 cut(s)	393, 2675
BstX2I	RGATCY	2 cut(s)	165, 2432
BstXI	CCANNNNNNTGG	1 cut(s)	3181
BstYI	RGATCY	2 cut(s)	165, 2432
BstZ17I	GTATAC	1 cut(s)	1916
Bsu15I	ATCGAT	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	2274
BsuI	GTATCC	1 cut(s)	1035
BsuRI	GGCC	5 cut(s)	1513, 1757, 1924, 2026, 3258
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	2 cut(s)	1458, 2422
BtgZI	GCGATG	1 cut(s)	2838
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	3 cut(s)	260, 939, 1155
BveI	ACCTGC	4 cut(s)	1649, 1993, 2021, 2467
Cac8I	GCNNGC	6 cut(s)	178, 815, 1404, 1962, 2024, 2673
CaiI	CAGNNNCTG	1 cut(s)	2013
CciI	TCATGA	1 cut(s)	1779
CfoI	GCGC	2 cut(s)	276, 547
Cfr10I	RCCGGY	1 cut(s)	2768
Cfr13I	GGNCC	9 cut(s)	1168, 1291, 1756, 1786, 1922, 2637, 3077, 3189, 3257
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	9 cut(s)	285, 334, 554, 1045, 1122, 1339, 1503, 1526, 2252
CviQI	GTAC	9 cut(s)	285, 334, 554, 1045, 1122, 1339, 1503, 1526, 2252
DraI	TTTAAA	1 cut(s)	1432
DrdI	GACNNNNNNGTC	1 cut(s)	120
DseDI	GACNNNNNNGTC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	2024
Eam1104I	CTCTTC	6 cut(s)	303, 690, 698, 1406, 2145, 2753
EarI	CTCTTC	6 cut(s)	303, 690, 698, 1406, 2145, 2753
Eco130I	CCWWGG	5 cut(s)	290, 898, 1458, 2422, 2633
Eco24I	GRGCYC	2 cut(s)	374, 1330
Eco31I	GGTCTC	3 cut(s)	1524, 1624, 1690
Eco32I	GATATC	3 cut(s)	322, 528, 1891
Eco47I	GGWCC	6 cut(s)	1168, 1291, 1786, 2637, 3077, 3189
Eco57I	CTGAAG	1 cut(s)	710
Eco81I	CCTNAGG	1 cut(s)	2274
Eco88I	CYCGRG	3 cut(s)	1323, 2708, 2777
EcoNI	CCTNNNNNAGG	1 cut(s)	1794
EcoO109I	RGGNCCY	2 cut(s)	1291, 1756
EcoRI	GAATTC	3 cut(s)	444, 921, 2268
EcoRII	CCWGG	6 cut(s)	1280, 1508, 1513, 1537, 1633, 2874
EcoRV	GATATC	3 cut(s)	322, 528, 1891
EcoT14I	CCWWGG	5 cut(s)	290, 898, 1458, 2422, 2633
EcoT22I	ATGCAT	2 cut(s)	946, 2418
EcoT38I	GRGCYC	2 cut(s)	374, 1330
ErhI	CCWWGG	5 cut(s)	290, 898, 1458, 2422, 2633
Esp3I	CGTCTC	1 cut(s)	2504
FaqI	GGGAC	4 cut(s)	234, 1277, 2179, 2690
FauI	CCCGC	1 cut(s)	1674
FauNDI	CATATG	3 cut(s)	946, 971, 2190
FbaI	TGATCA	2 cut(s)	1642, 1732
FblI	GTMKAC	4 cut(s)	1128, 1915, 2551, 2881
Fnu4HI	GCNGC	5 cut(s)	818, 1236, 2038, 2763, 2934
FriOI	GRGCYC	2 cut(s)	374, 1330
Fsp4HI	GCNGC	5 cut(s)	818, 1236, 2038, 2763, 2934
FspBI	CTAG	4 cut(s)	291, 624, 1049, 1097
GlaI	GCGC	2 cut(s)	275, 546
GluI	GCNGC	5 cut(s)	818, 1236, 2038, 2763, 2934
GsaI	CCCAGC	1 cut(s)	2007
GsuI	CTGGAG	2 cut(s)	2276, 2449
HaeIII	GGCC	5 cut(s)	1513, 1757, 1924, 2026, 3258
HapII	CCGG	2 cut(s)	1475, 2769
HhaI	GCGC	2 cut(s)	276, 547
Hin1I	GRCGYC	1 cut(s)	962
Hin6I	GCGC	2 cut(s)	274, 545
HinP1I	GCGC	2 cut(s)	274, 545
HincII	GTYRAC	4 cut(s)	960, 1129, 1726, 2905
HindII	GTYRAC	4 cut(s)	960, 1129, 1726, 2905
HinfI	GANTC	9 cut(s)	355, 467, 518, 582, 605, 1000, 1546, 2165, 3068
HpaI	GTTAAC	1 cut(s)	2905
HpaII	CCGG	2 cut(s)	1475, 2769
HphI	GGTGA	4 cut(s)	48, 146, 314, 1637
Hpy99I	CGWCG	1 cut(s)	3035
HpyCH4III	ACNGT	6 cut(s)	60, 1126, 1168, 1730, 2663, 2920
HpyCH4IV	ACGT	3 cut(s)	962, 1043, 2280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1670, 2013
HpySE526I	ACGT	3 cut(s)	962, 1043, 2280
Hsp92I	GRCGYC	1 cut(s)	962
HspAI	GCGC	2 cut(s)	274, 545
KflI	GGGWCCC	1 cut(s)	1291
Kpn2I	TCCGGA	1 cut(s)	1474
Ksp22I	TGATCA	2 cut(s)	1642, 1732
KspAI	GTTAAC	1 cut(s)	2905
LmnI	GCTCC	4 cut(s)	669, 1711, 2482, 2945
Lsp1109I	GCAGC	5 cut(s)	829, 1222, 2024, 2749, 2945
MaeI	CTAG	4 cut(s)	291, 624, 1049, 1097
MaeII	ACGT	3 cut(s)	962, 1043, 2280
MaeIII	GTNAC	7 cut(s)	54, 1562, 1596, 1850, 2383, 2454, 2920
MfeI	CAATTG	1 cut(s)	2017
MflI	RGATCY	2 cut(s)	165, 2432
MhlI	GDGCHC	3 cut(s)	374, 1330, 2524
MlsI	TGGCCA	1 cut(s)	2026
MluNI	TGGCCA	1 cut(s)	2026
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	3 cut(s)	910, 1466, 1915
Mox20I	TGGCCA	1 cut(s)	2026
Mph1103I	ATGCAT	2 cut(s)	946, 2418
MroI	TCCGGA	1 cut(s)	1474
MscI	TGGCCA	1 cut(s)	2026
MseI	TTAA	9 cut(s)	65, 411, 1431, 1443, 2409, 2484, 2904, 3008, 3212
MslI	CAYNNNNRTG	3 cut(s)	411, 435, 2421
Msp20I	TGGCCA	1 cut(s)	2026
MspA1I	CMGCKG	1 cut(s)	1271
MspI	CCGG	2 cut(s)	1475, 2769
MspR9I	CCNGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
MunI	CAATTG	1 cut(s)	2017
Mva1269I	GAATGC	2 cut(s)	1675, 2074
MvaI	CCWGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	1670, 2013
NcoI	CCATGG	2 cut(s)	1458, 2422
NdeI	CATATG	3 cut(s)	946, 971, 2190
NlaIV	GGNNCC	8 cut(s)	427, 636, 1292, 1293, 1473, 1663, 1788, 3078
NmuCI	GTSAC	2 cut(s)	54, 1850
NsiI	ATGCAT	2 cut(s)	946, 2418
NspI	RCATGY	3 cut(s)	545, 1215, 2135
NspV	TTCGAA	1 cut(s)	3229
PaeR7I	CTCGAG	2 cut(s)	1323, 2777
PagI	TCATGA	1 cut(s)	1779
PaqCI	CACCTGC	2 cut(s)	1649, 1993
PctI	GAATGC	2 cut(s)	1675, 2074
PfeI	GAWTC	8 cut(s)	355, 467, 518, 605, 1000, 1546, 2165, 3068
PflMI	CCANNNNNTGG	1 cut(s)	1287
PfoI	TCCNGGA	1 cut(s)	1280
PkrI	GCNGC	5 cut(s)	819, 1237, 2039, 2764, 2935
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	1291
PshAI	GACNNNNGTC	2 cut(s)	965, 2283
PshBI	ATTAAT	3 cut(s)	1443, 2484, 3008
Psp5II	RGGWCCY	1 cut(s)	1291
Psp6I	CCWGG	6 cut(s)	1280, 1508, 1513, 1537, 1633, 2874
PspFI	CCCAGC	1 cut(s)	2003
PspGI	CCWGG	6 cut(s)	1280, 1508, 1513, 1537, 1633, 2874
PspN4I	GGNNCC	8 cut(s)	427, 636, 1292, 1293, 1473, 1663, 1788, 3078
PspPI	GGNCC	9 cut(s)	1168, 1291, 1756, 1786, 1922, 2637, 3077, 3189, 3257
PspPPI	RGGWCCY	1 cut(s)	1291
PspXI	VCTCGAGB	1 cut(s)	1323
PstI	CTGCAG	1 cut(s)	2251
PstNI	CAGNNNCTG	1 cut(s)	2013
PsuI	RGATCY	2 cut(s)	165, 2432
PvuII	CAGCTG	1 cut(s)	1271
RsaI	GTAC	9 cut(s)	286, 335, 555, 1046, 1123, 1340, 1504, 1527, 2253
RsaNI	GTAC	9 cut(s)	285, 334, 554, 1045, 1122, 1339, 1503, 1526, 2252
RseI	CAYNNNNRTG	3 cut(s)	411, 435, 2421
SalI	GTCGAC	1 cut(s)	1127
SaqAI	TTAA	9 cut(s)	65, 411, 1431, 1443, 2409, 2484, 2904, 3008, 3212
SatI	GCNGC	5 cut(s)	818, 1236, 2038, 2763, 2934
Sau96I	GGNCC	9 cut(s)	1168, 1291, 1756, 1786, 1922, 2637, 3077, 3189, 3257
ScaI	AGTACT	1 cut(s)	2253
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	6 cut(s)	1282, 1510, 1515, 1539, 1635, 2876
SduI	GDGCHC	3 cut(s)	374, 1330, 2524
SfcI	CTRYAG	2 cut(s)	2247, 2662
Sfr274I	CTCGAG	2 cut(s)	1323, 2777
SfuI	TTCGAA	1 cut(s)	3229
SinI	GGWCC	6 cut(s)	1168, 1291, 1786, 2637, 3077, 3189
SlaI	CTCGAG	2 cut(s)	1323, 2777
SmiMI	CAYNNNNRTG	3 cut(s)	411, 435, 2421
SmlI	CTYRAG	6 cut(s)	1323, 2299, 2545, 2777, 2885, 3137
SmoI	CTYRAG	6 cut(s)	1323, 2299, 2545, 2777, 2885, 3137
SsiI	CCGC	4 cut(s)	423, 1681, 2515, 2793
SspI	AATATT	2 cut(s)	2146, 3210
SspMI	CTAG	4 cut(s)	291, 624, 1049, 1097
StyD4I	CCNGG	6 cut(s)	1280, 1508, 1513, 1537, 1633, 2874
StyI	CCWWGG	5 cut(s)	290, 898, 1458, 2422, 2633
TaaI	ACNGT	6 cut(s)	60, 1126, 1168, 1730, 2663, 2920
TaiI	ACGT	3 cut(s)	965, 1046, 2283
TatI	WGTACW	3 cut(s)	333, 1121, 2251
TfiI	GAWTC	8 cut(s)	355, 467, 518, 605, 1000, 1546, 2165, 3068
Tru1I	TTAA	9 cut(s)	65, 411, 1431, 1443, 2409, 2484, 2904, 3008, 3212
Tru9I	TTAA	9 cut(s)	65, 411, 1431, 1443, 2409, 2484, 2904, 3008, 3212
TscAI	CASTG	3 cut(s)	260, 939, 1162
TseFI	GTSAC	2 cut(s)	54, 1850
TseI	GCWGC	5 cut(s)	817, 1235, 2037, 2762, 2933
Tsp45I	GTSAC	2 cut(s)	54, 1850
TspRI	CASTG	3 cut(s)	260, 939, 1162
Van91I	CCANNNNNTGG	1 cut(s)	1287
VpaK11BI	GGWCC	6 cut(s)	1168, 1291, 1786, 2637, 3077, 3189
VspI	ATTAAT	3 cut(s)	1443, 2484, 3008
XagI	CCTNNNNNAGG	1 cut(s)	1794
XapI	RAATTY	8 cut(s)	5, 444, 921, 1385, 1427, 2216, 2268, 2696
XceI	RCATGY	3 cut(s)	545, 1215, 2135
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1835, 3178
XhoI	CTCGAG	2 cut(s)	1323, 2777
XmaJI	CCTAGG	1 cut(s)	290
XmiI	GTMKAC	4 cut(s)	1128, 1915, 2551, 2881
XspI	CTAG	4 cut(s)	291, 624, 1049, 1097
ZraI	GACGTC	1 cut(s)	963
ZrmI	AGTACT	1 cut(s)	2253
Zsp2I	ATGCAT	2 cut(s)	946, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.