Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000892

Physical Location & Seq

Genomic Coordinates Forward (+)

2622473 .. 2624183

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAGATGAAAGTTCACGGACCGTGTTATGAGTACGAGAGAAGAGAAGGAAATCAGGCTTGCCCTCAGTGTAAAACCAGATACAAGCGAATCAAGGGTAGTCCGAGGGTTGAAGGTGATGAAGAAGAAGATGGCATTGATGATTTGGACAATGAGTTCAATTATGGTAATCTTGATGCTTTGGGCCCTCATCAAGTTGCAGAGTCTGTGCTGTCTGCATGCCTTAACCTTGTAAGTGGTTCCGACTACAATTGCAGAATTCCTGCACATTCAGAGCATGAGTCCTCTCCCTTGGGTTCTGAAATCCCACTTTTGACCTATGGTGAAGAGGACTCTGAAATTTCTTCTGATCGACATGCTCTTATTGTACCTCCGTATATGGGTCATGGAAACAGAGTCCATCCTTTGCCTTTTTCTGATCCATCTTCTTTTAATGCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

148

Amino Acids

16.32

Weight (kDa)

4.78

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21770 AT4G39350 AT5G09870 AT5G64740
fragaria_vesca	FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_1g23890 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_2g13380 FvH4_5g26830 FvH4_5g26830 FvH4_5g26830
malus_domestica	MD00G1146900.v1.1 MD05G1029400.v1.1 MD10G1029800.v1.1 MD15G1340200.v1.1
prunus_persica	Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.5G000300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.6G161300_v2.0.a1 Prupe.8G035100_v2.0.a1
pyrus_communis	pycom01g03410 pycom01g03420 pycom01g03470 pycom05g02060 pycom05g02070 pycom15g29990
rosa_chinensis	RchiOBHm_Chr2g0119881 RchiOBHm_Chr6g0274931 RchiOBHm_Chr7g0217741
rosa_laevigata	RLG00000002442 RLG00000013507 RLG00000018496
rosa_multiflora	Rmu_sc0000202.1_g000022 Rmu_sc0001501.1_g000028 Rmu_sc0007760.1_g000002
rosa_roxburghii	Rroxscaffold_2G00124010 Rroxscaffold_3G00241720 Rroxscaffold_7G00193790
rosa_rugosa	Rorug02G0224300 Rorug02G0224400 Rorug02G0224500 Rorug06G0086400 Rorug06G0086500 Rorug07G0170900.1
rosa_samantha	Rh2AG282100 Rh2BG293400 Rh2DG288300 Rh2DG307400 Rh6AG201300 Rh6BG204900 Rh6CG206300 Rh6DG196400 Rh7AG311600 Rh7BG303500 Rh7CG330400
rosa_wichuraiana	Rw2G022520 Rw6G017510 Rw7G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	258, 339
AfaI	GTAC	2 cut(s)	35, 369
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	113, 160
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	184
ApaI	GGGCCC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	258, 339
AspS9I	GGNCC	3 cut(s)	20, 184, 185
AsuHPI	GGTGA	2 cut(s)	128, 335
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	188
BccI	CCATC	3 cut(s)	125, 408, 430
BfaI	CTAG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	3 cut(s)	20, 184, 185
BmiI	GGNNCC	2 cut(s)	186, 241
BmsI	GCATC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	104, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	104, 291
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	380
BsnI	GGCC	1 cut(s)	186
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	349, 418
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	186, 241
BspPI	GGATC	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	104, 291
BssMI	GATC	2 cut(s)	349, 418
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	37, 321
BstC8I	GCNNGC	2 cut(s)	61, 220
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	2 cut(s)	352, 421
BstMBI	GATC	2 cut(s)	349, 418
BstNSI	RCATGY	2 cut(s)	222, 359
BstSLI	GKGCMC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	61, 220
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	3 cut(s)	20, 184, 185
CpoI	CGGWCCG	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	34, 368
CspI	CGGWCCG	1 cut(s)	20
CviAII	CATG	4 cut(s)	219, 278, 356, 386
CviJI	RGCY	2 cut(s)	59, 186
CviKI_1	RGCY	2 cut(s)	59, 186
CviQI	GTAC	2 cut(s)	34, 368
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	351, 420
DpnII	GATC	2 cut(s)	349, 418
Eam1104I	CTCTTC	2 cut(s)	37, 321
EarI	CTCTTC	2 cut(s)	37, 321
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	222, 281, 359, 389
FaiI	YATR	9 cut(s)	30, 165, 220, 279, 321, 357, 378, 380, 387
FatI	CATG	4 cut(s)	218, 277, 355, 385
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	222, 281, 359, 389
HinfI	GANTC	5 cut(s)	90, 203, 281, 332, 396
HphI	GGTGA	2 cut(s)	128, 335
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	7 cut(s)	105, 244, 274, 301, 337, 349, 418
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	41, 107
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	6 cut(s)	4, 200, 218, 255, 266, 437
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	222, 281, 359, 389
Kzo9I	GATC	2 cut(s)	349, 418
LpnPI	CCDG	3 cut(s)	41, 91, 276
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	442
MalI	GATC	2 cut(s)	351, 420
MboI	GATC	2 cut(s)	349, 418
MboII	GAAGA	7 cut(s)	54, 134, 137, 140, 336, 338, 417
MfeI	CAATTG	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	4 cut(s)	160, 250, 258, 339
MlyI	GAGTC	4 cut(s)	212, 290, 326, 405
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	75, 99, 198, 295, 322, 381
MseI	TTAA	2 cut(s)	225, 432
MunI	CAATTG	1 cut(s)	250
NdeII	GATC	2 cut(s)	349, 418
NlaIII	CATG	4 cut(s)	222, 281, 359, 389
NlaIV	GGNNCC	2 cut(s)	186, 241
NspI	RCATGY	2 cut(s)	222, 359
PaeI	GCATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	90
PleI	GAGTC	4 cut(s)	211, 289, 326, 404
PpsI	GAGTC	4 cut(s)	211, 289, 326, 404
PspN4I	GGNNCC	2 cut(s)	186, 241
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	20, 184, 185
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	35, 369
RsaNI	GTAC	2 cut(s)	34, 368
Rsr2I	CGGWCCG	1 cut(s)	20
RsrII	CGGWCCG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	225, 432
Sau3AI	GATC	2 cut(s)	349, 418
Sau96I	GGNCC	3 cut(s)	20, 184, 185
SchI	GAGTC	4 cut(s)	212, 290, 326, 405
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	5 cut(s)	118, 231, 320, 373, 443
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	20
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	4 cut(s)	160, 250, 258, 339
SspMI	CTAG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	160, 250, 258, 339
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	225, 432
Tru9I	TTAA	2 cut(s)	225, 432
TscAI	CASTG	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	23, 135
TspGWI	ACGGA	2 cut(s)	33, 363
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	258, 339
XceI	RCATGY	2 cut(s)	222, 359
XspI	CTAG	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.