MD02G1105000.v1.1

Alpha-aminoadipic semialdehyde

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
8483307 .. 8489193
5887 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1105000.v1.1.491

Sequence Viewer

Length: 3417 bp
ATGATTGGAAATGGGGTGGTGGGGATTTTGGCCGAGTCTGTGAACAAGTGGGAGAGAAGAGCGCCTCTGACGCCGTCACACTGCGCTCTGCTGCTCCACAGTGCAAGAGATAAAACCGGAGTTTCTCGGATCATACTGCAGCCCTCGACGAAGAGAATTCATCATGATGCAATGTATGAAGATGTTGGATGTGAAATCTCTGAGGATTTGTCACAATGTGGTTTGATCCTCGGCATCAAACAGCCAAAGCTGGAGATGATTCTGCCGGATAGAGCTTATGCGTTTTTTTCGCATACTCATAAGGCTCAGAAGGAAAACATGCCACTCTTGGATAAGATCCTAGCAGAAAGAGTGTCTCTCTATGATTACGAGCTTATTGTCGGGGATCATGCGAAAAGACTACTTGCATTCGGAAAGTATGCTGGTAGAGCAGGATTTATCGACTTCTTGCTTGGTTTAGGACAGACTATGTTAATATTTGACCATCTCTTGTGTACTTTCGGGTACTTTGGATGTCAGGTTTTTTCTCACTTTGTTTTAATTTGTCAAGGGTACCTAAGTCTTGGATATTCGACCCCGTTCCTATCGTTGGGTGCATCTTATATGTATCCATCTTTGGCTGCTGCCAAGGCGGCTGTAATTTCTGTGGGCGAAGAGATGGCAACTCTCGGACTGCCATCAGGGATCTGTCCTCTTGTCTTCGTTTTCACTGGTTCAGGAAATGTTGCTTCTGGTGCACAAGAGATATTTAAGCTTCTTCCTCATACTTTTGTGGAACCAAGTGAACTTCCAGCGCTATTTGGGGTGGCCAAGGATGCTGCTCAAACTACTCGAAAATCGAAAAGGATCTTCCAAGTATACGGTTGTGTTGTGACTAGTAAACACATGGTTGAACACAAAGATCCAACAAGAGAATTTGACAAAGCTGACTATTATGCGCATCCAGAACACTACAACCCTGTTTTCCATGAAAAAATAGCCCCGTATGCATCTGTAATCGTGAATTGCATGTATTGGGAGAAACGATTTCCACGCTTATTGAGTACTAAGCAGGTTCAAGATCTAACAAAGAAAGGAAGTGTGCTTGTTGGAATCGCTGACATAACTTGTGACATAGGGGGGTCAATAGAATTTGTCAACCAAACCACATCAATTGACTCACCTTTCTTCAGATACGATCCTGTGACTAATTCTTACCATCGTGACATGGACGACGCTGGTGTGATATGTCAAGCTGTGGACATTCTTCCGACAGAATTTGCAAAAGAGGCTTCGAAACATTTTGGAGACATATTGTCCAATTTTGTTGGTAATTTGGCTTCTACAAAAGACATTACAAAGTTGCCTGCACATTTAAGGAGAGCTTGCATAACCCATGAAGGAGCACTTACCTCATTGTATGAATATATTCCGCGTATGAGAAAGTCAGACTCAGAAGAAATATCTAAGAATCCTGCTAATCACAACTCTAACAAGAACTACAACATATCAGTAAGTTTCTCTATTTCTATTAACAATTTCGGATATTTCTCTGCTTTTCATGCCATATATGCTGAGTTTCATTTTAAATCACAGGTATCTCTCAGTGGTCACCTATTTGATCAGTTTCTGATAAATGAGGCCTTAGATATCATTGAAGCTGCAGGCGGCTCCTTTCATTTGGTTAAGTGTGACGTGGGTCAATGTTCGAATTCTCCATCATTCTCTGAACTTGAAGTGGGTGCAGATGACAGGGCCGTTCTTGATCAAATTATCGACTCTTTAACTTCTCTAGCGAATTCAAACGAAAATCATGACTTAAAGCAAGAGAAAAATAAATTTTCTTTGAGTTTTGGTGAAGTCCAGCACAGTCCCACTAAAAAGGGAAATGACACAAAAAGAAAGGCTGGGGTTCTGATTATTGGAGCAGGCCGGGTCTGCCAGCCAGCTGCTGAGATGTTAGCATCAGTTAGCGGAATGCCATCCCACGAATGGTACAAAACATGCCTTGAAGATGAATTCGAAGAGATTAATGATGTGCAAGTTACTGTTGCATCTCTCTACCTAAAGGATGCTGAAGAGATCACTGAAGGTATTCCAAATGCAACAGCAGTTCAACTTGATATTTCGGACACTGGCAGTCTGCATAGGTATATATCTGAGGCTGAACTTGTTATAAGTTTACTGCCGGCTTTTTGCCACGTTACTGTAGCAAATGCATGTATTGAGCTTAAAAAGCATCTTGTCACTGCTAGCTATGTTGATGAATCCATGTCAAAACTGGATGAGAAGGCAAAGAGTGCTGGTATTACGATTCTTGGTGAGATGGGCTTGGACCCTGGGATAGATCATATGATGGCGATGAAGATGATCAACCAAGCACACGTTCGGAAGGGGAAAATAAGGTCTTTCACTTCTTACTGTGGTGGACTGCCATCCCCAGTTGCAGCAAACAATCCGTTAGCATATAAATTCAGTTGGAGTCCTGCAGGAGCTATTCGAGCTGGACGTAATCCTGCCACGTACAAATCTAACGGCAAAGTTGTAGAAGTTGATGGTATGTTGTCAGTGATGAGCTATTTTGATTATCATAATGAATACGAGTCATTCTGCACTTTTTCACTTTTATCTTTATGGTACAAAATTGCAGGGAAGGATCTTTATGATTCAGCTGCGAAATATCGGGTTCCAGACCTTCCAGCCTTCTCGTTAGAATGCCTTCCAAATCGTAACTCGCTAGTTTATGGGGACTTGTATGGAATAGGACATGAAGCATCAACAGTCTTTCGTGGAACTCTTCGATATGAAGGGTTCGGAGAAATAATGGGAACGCTTTCAAGAATTGGTTTATTCGAATCTGAACCTCATCCGCTTCTTAAGGATGCAAAGAGACCCACATTCAGGAAATTTTTGTCCGAACTCCTCAAAATGAAAACTGAAGATCTGGACAGACCTCTGATAGGAGAGAAAATCATCCCCGAAAGGATTGTCACGCTCGGATACTGCAAAGAGCAAGGAGCTGCTGTGAGGGCAGCTAAGACTATCCTATTTCTGGGACTTCACGAGCAGAAAGAGATCCCCTCCTCTTGCAAAAGCGCATTTGACGTTGCTTGTCTTCGGATGGAAGAGAGATTAGCATACTCCAGCATGGAACAGGATATGGTGCTTTTGAATCATGAAGTGGAGGTTGAGTTCCCGGATGGACTTCGAGAGAAGCATACAGGCACTCTACTGGAATTCGGGAAAATGAAGAGTGGTAAAATGATCACCGCCATGGCGTTCACTGTTGGAGTCCCGGCAGCCATTGGAGCTCTGCTCATACTTGGAAACAAGATCAAAACCAGAGGTGTCTTGAGACCTATCGAACCAGAAGTATACGTCCCAGCAATGGATATACTACAAGCATATGGAATCAAGTTAATGGAGAAGATCGAGTGA

Protein Analysis

1139

Amino Acids

125.88

Weight (kDa)

6.12

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AlaDh_PNT_N PF05222 8 - 144 7.5e-18 Alanine dehydrogenase/PNT, N-terminal domain
AlaDh_PNT_C PF01262 326 - 464 9.2e-06 Alanine dehydrogenase/PNT, C-terminal domain
Saccharop_dh_N PF04455 524 - 601 2e-19 LOR/SDH bifunctional enzyme conserved region
Sacchrp_dh_NADP PF03435 631 - 766 1.1e-18 Saccharopine dehydrogenase NADP binding domain
Sacchrp_dh_C PF16653 770 - 1131 2.6e-76 Saccharopine dehydrogenase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2156
Acc16I TGCGCA 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 1042
Acc65I GGTACC 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 552
AccI GTMKAC 2 cut(s) 858, 3354
AccII CGCG 1 cut(s) 1414
AciI CCGC 6 cut(s) 632, 1412, 1647, 1953, 2849, 3249
AcoI YGGCCR 2 cut(s) 30, 807
AcuI CTGAAG 4 cut(s) 1153, 2076, 2088, 2937
AcyI GRCGYC 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 7 cut(s) 496, 506, 554, 1045, 1976, 2504, 2618
AfeI AGCGCT 1 cut(s) 795
AfiI CCNNNNNNNGG 6 cut(s) 589, 1971, 2880, 2939, 3031, 3367
AflII CTTAAG 1 cut(s) 2855
AflIII ACRYGT 1 cut(s) 2362
AgsI TTSAA 9 cut(s) 893, 1058, 1637, 1715, 1782, 1991, 2096, 2817, 3151
AhdI GACNNNNNGTC 1 cut(s) 1294
AhlI ACTAGT 1 cut(s) 875
AjiI CACGTC 1 cut(s) 1675
AjnI CCWGG 1 cut(s) 2317
AjuI GAANNNNNNNTTGG 2 cut(s) 2349, 2381
AloI GAACNNNNNNTCC 2 cut(s) 3155, 3187
Alw21I GWGCWC 3 cut(s) 739, 1387, 3292
Alw26I GTCTC 4 cut(s) 360, 1281, 2863, 3328
Alw44I GTGCAC 1 cut(s) 735
AlwNI CAGNNNCTG 2 cut(s) 1609, 1931
Aor51HI AGCGCT 1 cut(s) 795
AoxI GGCC 5 cut(s) 30, 807, 1620, 1734, 1909
ApaLI GTGCAC 1 cut(s) 735
ArsI GACNNNNNNTTYG 2 cut(s) 2952, 2984
AseI ATTAAT 1 cut(s) 2010
Asp700I GAANNNNTTC 4 cut(s) 1407, 2073, 2697, 2812
Asp718I GGTACC 1 cut(s) 552
AspLEI GCGC 5 cut(s) 64, 86, 796, 940, 3077
AspS9I GGNCC 2 cut(s) 1734, 2314
AsuC2I CCSGG 3 cut(s) 1913, 3176, 3275
AsuHPI GGTGA 5 cut(s) 1152, 1583, 1847, 2312, 3238
AsuII TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
AsuNHI GCTAGC 1 cut(s) 2231
AvaII GGWCC 1 cut(s) 2314
BaeGI GKGCMC 1 cut(s) 739
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
BalI TGGCCA 1 cut(s) 809
BanI GGYRCC 1 cut(s) 552
BanII GRGCYC 1 cut(s) 3292
BarI GAAGNNNNNNTAC 2 cut(s) 1303, 1335
BauI CACGAG 1 cut(s) 3041
BbsI GAAGAC 2 cut(s) 691, 3086
Bbv12I GWGCWC 3 cut(s) 739, 1387, 3292
BceAI ACGGC 3 cut(s) 58, 1721, 2530
BciT130I CCWGG 1 cut(s) 2319
BciVI GTATCC 2 cut(s) 618, 2972
BclI TGATCA 4 cut(s) 1600, 1744, 2349, 3243
BcnI CCSGG 3 cut(s) 1913, 3176, 3275
BcoDI GTCTC 4 cut(s) 360, 1281, 2863, 3328
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 5 cut(s) 341, 876, 1772, 2232, 2717
BfmI CTRYAG 4 cut(s) 137, 1641, 2187, 2466
BfoI RGCGCY 2 cut(s) 65, 797
BfrI CTTAAG 1 cut(s) 2855
BfuAI ACCTGC 1 cut(s) 1042
BfuI GTATCC 2 cut(s) 618, 2972
BglI GCCNNNNNGGC 1 cut(s) 632
BglII AGATCT 2 cut(s) 1060, 2920
BmcAI AGTACT 1 cut(s) 1045
Bme1390I CCNGG 4 cut(s) 1913, 2319, 3176, 3275
Bme18I GGWCC 1 cut(s) 2314
BmeRI GACNNNNNGTC 1 cut(s) 1294
BmgBI CACGTC 1 cut(s) 1675
BmgT120I GGNCC 2 cut(s) 1734, 2314
BmiI GGNNCC 5 cut(s) 554, 777, 1651, 2316, 2667
BmrFI CCNGG 4 cut(s) 1913, 2319, 3176, 3275
BmrI ACTGGG 1 cut(s) 2414
BmtI GCTAGC 1 cut(s) 2235
BmuI ACTGGG 1 cut(s) 2414
BoxI GACNNNNGTC 1 cut(s) 1677
BpiI GAAGAC 2 cut(s) 691, 3086
BplI GAGNNNNNCTC 6 cut(s) 342, 374, 3044, 3076, 3279, 3311
BpmI CTGGAG 2 cut(s) 272, 3106
Bpu14I TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
BpuEI CTTGAG 1 cut(s) 3352
BpuMI CCSGG 3 cut(s) 1913, 3176, 3275
BsaAI YACGTR 1 cut(s) 2502
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 2 cut(s) 2863, 3328
BsaJI CCNNGG 6 cut(s) 229, 627, 810, 2317, 2318, 3252
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 2988, 3018, 3155, 3185
Bsc4I CCNNNNNNNGG 6 cut(s) 589, 1971, 2880, 2939, 3031, 3367
Bse118I RCCGGY 1 cut(s) 2167
Bse1I ACTGG 5 cut(s) 715, 2119, 2265, 2420, 3216
Bse3DI GCAATG 2 cut(s) 177, 3372
BseBI CCWGG 1 cut(s) 2319
BseDI CCNNGG 6 cut(s) 229, 627, 810, 2317, 2318, 3252
BseLI CCNNNNNNNGG 6 cut(s) 589, 1971, 2880, 2939, 3031, 3367
BseMI GCAATG 2 cut(s) 177, 3372
BseMII CTCAG 7 cut(s) 192, 320, 1446, 1545, 1597, 1923, 2130
BseNI ACTGG 5 cut(s) 715, 2119, 2265, 2420, 3216
BseRI GAGGAG 2 cut(s) 2891, 3052
BseSI GKGCMC 1 cut(s) 739
BseYI CCCAGC 2 cut(s) 1886, 3361
BsgI GTGCAG 3 cut(s) 1332, 1743, 2575
Bsh1236I CGCG 1 cut(s) 1414
BshFI GGCC 5 cut(s) 32, 809, 1622, 1736, 1911
BshNI GGYRCC 1 cut(s) 552
BsiHKAI GWGCWC 3 cut(s) 739, 1387, 3292
BsiSI CCGG 6 cut(s) 117, 266, 1912, 2168, 3176, 3275
BslFI GGGAC 5 cut(s) 1836, 2741, 3048, 3257, 3344
BslI CCNNNNNNNGG 6 cut(s) 589, 1971, 2880, 2939, 3031, 3367
BsmAI GTCTC 4 cut(s) 360, 1281, 2863, 3328
BsmFI GGGAC 5 cut(s) 1836, 2741, 3048, 3257, 3344
BsmI GAATGC 3 cut(s) 407, 1962, 2699
BsnI GGCC 5 cut(s) 32, 809, 1622, 1736, 1911
Bso31I GGTCTC 2 cut(s) 2863, 3328
Bsp119I TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
Bsp1286I GDGCHC 3 cut(s) 739, 1387, 3292
Bsp19I CCATGG 1 cut(s) 3252
BspACI CCGC 6 cut(s) 632, 1412, 1647, 1953, 2849, 3249
BspANI GGCC 5 cut(s) 32, 809, 1622, 1736, 1911
BspCNI CTCAG 7 cut(s) 193, 319, 1445, 1546, 1596, 1924, 2131
BspFNI CGCG 1 cut(s) 1414
BspHI TCATGA 3 cut(s) 163, 1792, 3154
BspLI GGNNCC 5 cut(s) 554, 777, 1651, 2316, 2667
BspMAI CTGCAG 3 cut(s) 141, 1645, 2470
BspMI ACCTGC 1 cut(s) 1042
BspOI GCTAGC 1 cut(s) 2235
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
BspT107I GGYRCC 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 2855
BspTNI GGTCTC 2 cut(s) 2863, 3328
BsrDI GCAATG 2 cut(s) 177, 3372
BsrFI RCCGGY 1 cut(s) 2167
BsrI ACTGG 5 cut(s) 715, 2119, 2265, 2420, 3216
BssAI RCCGGY 1 cut(s) 2167
BssECI CCNNGG 6 cut(s) 229, 627, 810, 2317, 2318, 3252
BssNAI GTATAC 2 cut(s) 859, 3355
BssNI GRCGYC 1 cut(s) 71
BssSI CACGAG 1 cut(s) 3041
BssT1I CCWWGG 3 cut(s) 627, 810, 3252
Bst1107I GTATAC 2 cut(s) 859, 3355
Bst2BI CACGAG 1 cut(s) 3041
Bst2UI CCWGG 1 cut(s) 2319
Bst4CI ACNGT 8 cut(s) 101, 863, 1850, 2029, 2188, 2402, 2761, 3265
Bst6I CTCTTC 8 cut(s) 52, 146, 648, 1998, 2052, 2781, 3099, 3224
BstACI GRCGYC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 2855
BstAPI GCANNNNNTGC 1 cut(s) 2279
BstBAI YACGTR 1 cut(s) 2502
BstBI TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
BstC8I GCNNGC 8 cut(s) 1347, 1366, 1645, 1909, 1922, 1926, 2169, 2233
BstDSI CCRYGG 1 cut(s) 3252
BstEII GGTNACC 1 cut(s) 1589
BstENI CCTNNNNNAGG 1 cut(s) 2937
BstFNI CGCG 1 cut(s) 1414
BstH2I RGCGCY 2 cut(s) 65, 797
BstHHI GCGC 5 cut(s) 64, 86, 796, 940, 3077
BstMAI GTCTC 4 cut(s) 360, 1281, 2863, 3328
BstNI CCWGG 1 cut(s) 2319
BstNSI RCATGY 4 cut(s) 322, 1012, 1986, 2202
BstPAI GACNNNNGTC 1 cut(s) 1677
BstPI GGTNACC 1 cut(s) 1589
BstSCI CCNGG 4 cut(s) 1911, 2317, 3174, 3273
BstSFI CTRYAG 4 cut(s) 137, 1641, 2187, 2466
BstSLI GKGCMC 1 cut(s) 739
BstUI CGCG 1 cut(s) 1414
BstV2I GAAGAC 2 cut(s) 691, 3086
BstX2I RGATCY 8 cut(s) 336, 684, 846, 901, 1060, 2635, 2920, 3054
BstYI RGATCY 8 cut(s) 336, 684, 846, 901, 1060, 2635, 2920, 3054
BstZ17I GTATAC 2 cut(s) 859, 3355
BsuI GTATCC 2 cut(s) 618, 2972
BsuRI GGCC 5 cut(s) 32, 809, 1622, 1736, 1911
BtgI CCRYGG 1 cut(s) 3252
BtgZI GCGATG 1 cut(s) 2354
BtrI CACGTC 1 cut(s) 1675
BtsI GCAGTG 2 cut(s) 79, 2226
BtsIMutI CAGTG 9 cut(s) 79, 106, 708, 1591, 2064, 2112, 2226, 2553, 3261
BveI ACCTGC 1 cut(s) 1042
Cac8I GCNNGC 8 cut(s) 1347, 1366, 1645, 1909, 1922, 1926, 2169, 2233
CaiI CAGNNNCTG 2 cut(s) 1609, 1931
CciI TCATGA 3 cut(s) 163, 1792, 3154
CfoI GCGC 5 cut(s) 64, 86, 796, 940, 3077
Cfr10I RCCGGY 1 cut(s) 2167
Cfr13I GGNCC 2 cut(s) 1734, 2314
CseI GACGC 2 cut(s) 79, 1223
Csp6I GTAC 7 cut(s) 495, 505, 553, 1044, 1975, 2503, 2617
CspCI CAANNNNNGTGG 4 cut(s) 1020, 1055, 1135, 1170
CviQI GTAC 7 cut(s) 495, 505, 553, 1044, 1975, 2503, 2617
DraI TTTAAA 1 cut(s) 1567
DraIII CACNNNGTG 1 cut(s) 218
DriI GACNNNNNGTC 1 cut(s) 1294
EaeI YGGCCR 2 cut(s) 30, 807
Eam1104I CTCTTC 8 cut(s) 52, 146, 648, 1998, 2052, 2781, 3099, 3224
Eam1105I GACNNNNNGTC 1 cut(s) 1294
EarI CTCTTC 8 cut(s) 52, 146, 648, 1998, 2052, 2781, 3099, 3224
Ecl136II GAGCTC 1 cut(s) 3290
Eco130I CCWWGG 3 cut(s) 627, 810, 3252
Eco147I AGGCCT 1 cut(s) 1622
Eco24I GRGCYC 1 cut(s) 3292
Eco31I GGTCTC 2 cut(s) 2863, 3328
Eco32I GATATC 1 cut(s) 1630
Eco47I GGWCC 1 cut(s) 2314
Eco47III AGCGCT 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 3290
Eco57I CTGAAG 4 cut(s) 1153, 2076, 2088, 2937
Eco91I GGTNACC 1 cut(s) 1589
EcoICRI GAGCTC 1 cut(s) 3290
EcoNI CCTNNNNNAGG 1 cut(s) 2937
EcoO65I GGTNACC 1 cut(s) 1589
EcoRI GAATTC 5 cut(s) 156, 1690, 1777, 1997, 3215
EcoRII CCWGG 1 cut(s) 2317
EcoRV GATATC 1 cut(s) 1630
EcoT14I CCWWGG 3 cut(s) 627, 810, 3252
EcoT22I ATGCAT 2 cut(s) 991, 2200
EcoT38I GRGCYC 1 cut(s) 3292
ErhI CCWWGG 3 cut(s) 627, 810, 3252
FalI AAGNNNNNCTT 4 cut(s) 1348, 1380, 1371, 1403
FaqI GGGAC 5 cut(s) 1836, 2741, 3048, 3257, 3344
FauNDI CATATG 2 cut(s) 2331, 3385
FbaI TGATCA 4 cut(s) 1600, 1744, 2349, 3243
FblI GTMKAC 2 cut(s) 858, 3354
FriOI GRGCYC 1 cut(s) 3292
FspAI RTGCGCAY 1 cut(s) 939
FspBI CTAG 5 cut(s) 341, 876, 1772, 2232, 2717
FspI TGCGCA 1 cut(s) 939
GlaI GCGC 5 cut(s) 63, 85, 795, 939, 3076
GsaI CCCAGC 2 cut(s) 1890, 3365
GsuI CTGGAG 2 cut(s) 272, 3106
HaeII RGCGCY 2 cut(s) 65, 797
HaeIII GGCC 5 cut(s) 32, 809, 1622, 1736, 1911
HapII CCGG 6 cut(s) 117, 266, 1912, 2168, 3176, 3275
HgaI GACGC 2 cut(s) 79, 1223
HhaI GCGC 5 cut(s) 64, 86, 796, 940, 3077
Hin1I GRCGYC 1 cut(s) 71
Hin6I GCGC 5 cut(s) 62, 84, 794, 938, 3075
HinP1I GCGC 5 cut(s) 62, 84, 794, 938, 3075
HincII GTYRAC 1 cut(s) 1138
HindII GTYRAC 1 cut(s) 1138
HindIII AAGCTT 1 cut(s) 752
HpaII CCGG 6 cut(s) 117, 266, 1912, 2168, 3176, 3275
HphI GGTGA 5 cut(s) 1152, 1583, 1847, 2312, 3238
Hpy99I CGWCG 2 cut(s) 151, 1217
HpyCH4III ACNGT 8 cut(s) 101, 863, 1850, 2029, 2188, 2402, 2761, 3265
HpyCH4IV ACGT 7 cut(s) 1674, 2181, 2364, 2488, 2501, 3084, 3357
HpySE526I ACGT 7 cut(s) 1674, 2181, 2364, 2488, 2501, 3084, 3357
Hsp92I GRCGYC 1 cut(s) 71
HspAI GCGC 5 cut(s) 62, 84, 794, 938, 3075
KpnI GGTACC 1 cut(s) 556
KroI GCCGGC 1 cut(s) 2167
KroNI GCCGGC 1 cut(s) 2169
Ksp22I TGATCA 4 cut(s) 1600, 1744, 2349, 3243
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 7 cut(s) 99, 1382, 1655, 1904, 2471, 2996, 3287
MaeI CTAG 5 cut(s) 341, 876, 1772, 2232, 2717
MaeII ACGT 7 cut(s) 1674, 2181, 2364, 2488, 2501, 3084, 3357
MfeI CAATTG 1 cut(s) 1152
MflI RGATCY 8 cut(s) 336, 684, 846, 901, 1060, 2635, 2920, 3054
MhlI GDGCHC 3 cut(s) 739, 1387, 3292
MlsI TGGCCA 1 cut(s) 809
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 7 cut(s) 44, 1151, 1424, 1751, 2470, 2591, 3279
MmeI TCCRAC 6 cut(s) 166, 929, 1069, 1274, 2438, 3247
Mox20I TGGCCA 1 cut(s) 809
Mph1103I ATGCAT 2 cut(s) 991, 2200
MroNI GCCGGC 1 cut(s) 2167
MroXI GAANNNNTTC 4 cut(s) 1407, 2073, 2697, 2812
MscI TGGCCA 1 cut(s) 809
MslI CAYNNNNRTG 2 cut(s) 165, 3251
Msp20I TGGCCA 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 1928, 2651
MspCI CTTAAG 1 cut(s) 2855
MspI CCGG 6 cut(s) 117, 266, 1912, 2168, 3176, 3275
MspR9I CCNGG 4 cut(s) 1913, 2319, 3176, 3275
MunI CAATTG 1 cut(s) 1152
Mva1269I GAATGC 3 cut(s) 407, 1962, 2699
MvaI CCWGG 1 cut(s) 2319
MvnI CGCG 1 cut(s) 1414
NaeI GCCGGC 1 cut(s) 2169
NciI CCSGG 3 cut(s) 1913, 3176, 3275
NcoI CCATGG 1 cut(s) 3252
NdeI CATATG 2 cut(s) 2331, 3385
NgoMIV GCCGGC 1 cut(s) 2167
NheI GCTAGC 1 cut(s) 2231
NlaIV GGNNCC 5 cut(s) 554, 777, 1651, 2316, 2667
NmeAIII GCCGAG 2 cut(s) 58, 210
NsbI TGCGCA 1 cut(s) 939
NsiI ATGCAT 2 cut(s) 991, 2200
NspI RCATGY 4 cut(s) 322, 1012, 1986, 2202
NspV TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
PagI TCATGA 3 cut(s) 163, 1792, 3154
PasI CCCWGGG 1 cut(s) 2318
PceI AGGCCT 1 cut(s) 1622
PciSI GCTCTTC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 2485
PctI GAATGC 3 cut(s) 407, 1962, 2699
PdiI GCCGGC 1 cut(s) 2169
PdmI GAANNNNTTC 4 cut(s) 1407, 2073, 2697, 2812
PfeI GAWTC 9 cut(s) 259, 1092, 1450, 2246, 2293, 2645, 2834, 3151, 3390
PflFI GACNNNGTC 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 3174
PleI GAGTC 7 cut(s) 43, 1151, 1424, 1751, 2469, 2590, 3278
PpsI GAGTC 7 cut(s) 43, 1151, 1424, 1751, 2469, 2590, 3278
Ppu21I YACGTR 1 cut(s) 2502
PshAI GACNNNNGTC 1 cut(s) 1677
PshBI ATTAAT 1 cut(s) 2010
PsiI TTATAA 1 cut(s) 2156
Psp124BI GAGCTC 1 cut(s) 3292
Psp6I CCWGG 1 cut(s) 2317
PspEI GGTNACC 1 cut(s) 1589
PspFI CCCAGC 2 cut(s) 1886, 3361
PspGI CCWGG 1 cut(s) 2317
PspN4I GGNNCC 5 cut(s) 554, 777, 1651, 2316, 2667
PspPI GGNCC 2 cut(s) 1734, 2314
PstI CTGCAG 3 cut(s) 141, 1645, 2470
PstNI CAGNNNCTG 2 cut(s) 1609, 1931
PsuI RGATCY 8 cut(s) 336, 684, 846, 901, 1060, 2635, 2920, 3054
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 1928, 2651
RsaI GTAC 7 cut(s) 496, 506, 554, 1045, 1976, 2504, 2618
RsaNI GTAC 7 cut(s) 495, 505, 553, 1044, 1975, 2503, 2617
RseI CAYNNNNRTG 2 cut(s) 165, 3251
SacI GAGCTC 1 cut(s) 3292
SapI GCTCTTC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 1734, 2314
SbfI CCTGCAGG 1 cut(s) 2470
ScaI AGTACT 1 cut(s) 1045
SchI GAGTC 7 cut(s) 44, 1151, 1424, 1751, 2470, 2591, 3279
ScrFI CCNGG 4 cut(s) 1913, 2319, 3176, 3275
SdaI CCTGCAGG 1 cut(s) 2470
SduI GDGCHC 3 cut(s) 739, 1387, 3292
SfcI CTRYAG 4 cut(s) 137, 1641, 2187, 2466
SfuI TTCGAA 4 cut(s) 1274, 1688, 2001, 2832
SinI GGWCC 1 cut(s) 2314
SmiMI CAYNNNNRTG 2 cut(s) 165, 3251
SmlI CTYRAG 2 cut(s) 2855, 3331
SmoI CTYRAG 2 cut(s) 2855, 3331
SpeI ACTAGT 1 cut(s) 875
Sse8387I CCTGCAGG 1 cut(s) 2470
SseBI AGGCCT 1 cut(s) 1622
SsiI CCGC 6 cut(s) 632, 1412, 1647, 1953, 2849, 3249
SspI AATATT 1 cut(s) 477
SspMI CTAG 5 cut(s) 341, 876, 1772, 2232, 2717
SstI GAGCTC 1 cut(s) 3292
StuI AGGCCT 1 cut(s) 1622
StyD4I CCNGG 4 cut(s) 1911, 2317, 3174, 3273
StyI CCWWGG 3 cut(s) 627, 810, 3252
TaaI ACNGT 8 cut(s) 101, 863, 1850, 2029, 2188, 2402, 2761, 3265
TaiI ACGT 7 cut(s) 1677, 2184, 2367, 2491, 2504, 3087, 3360
TatI WGTACW 2 cut(s) 494, 1043
TauI GCSGC 2 cut(s) 635, 1650
TfiI GAWTC 9 cut(s) 259, 1092, 1450, 2246, 2293, 2645, 2834, 3151, 3390
TscAI CASTG 9 cut(s) 86, 106, 715, 1591, 2071, 2119, 2233, 2553, 3268
TspGWI ACGGA 1 cut(s) 2427
TspRI CASTG 9 cut(s) 86, 106, 715, 1591, 2071, 2119, 2233, 2553, 3268
Tth111I GACNNNGTC 1 cut(s) 73
Vha464I CTTAAG 1 cut(s) 2855
VneI GTGCAC 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 2314
VspI ATTAAT 1 cut(s) 2010
XagI CCTNNNNNAGG 1 cut(s) 2937
XceI RCATGY 4 cut(s) 322, 1012, 1986, 2202
XcmI CCANNNNNNNNNTGG 2 cut(s) 1968, 2257
XmiI GTMKAC 2 cut(s) 858, 3354
XmnI GAANNNNTTC 4 cut(s) 1407, 2073, 2697, 2812
XspI CTAG 5 cut(s) 341, 876, 1772, 2232, 2717
ZrmI AGTACT 1 cut(s) 1045
Zsp2I ATGCAT 2 cut(s) 991, 2200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.