Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Reverse (-)

34173517 .. 34174886

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTAGATGAGGGAGAGGAAGAGTCTGTTTTTTCTGGTGCACAAGAGATATTCAAGCTTCTCCCTCATACTTCTGTGGAGCGAAGCAGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTACATGCAGAACACTACAACCCGGTTTTCCATGAAAAAAATAGCTCCTTATGCATCTGTAATTGTGAATTGTATGTATTGGGAGAAAAGATATCCTCGATTATTGAGTACCAAGCAGTTTCAAGATTTAACAAGGAAAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

128

Amino Acids

14.65

Weight (kDa)

5.94

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	2 cut(s)	243, 350
AgsI	TTSAA	4 cut(s)	55, 144, 197, 363
AjnI	CCWGG	2 cut(s)	94, 134
AluBI	AGCT	3 cut(s)	58, 230, 285
AluI	AGCT	3 cut(s)	58, 230, 285
Alw21I	GWGCWC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	96, 136
BcnI	CCSGG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	96, 136, 263
BmrFI	CCNGG	3 cut(s)	96, 136, 263
BmsI	GCATC	2 cut(s)	109, 303
BpiI	GAAGAC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	94, 95, 114
BseBI	CCWGG	2 cut(s)	96, 136
BseDI	CCNNGG	3 cut(s)	94, 95, 114
BseGI	GGATG	3 cut(s)	114, 124, 387
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	263
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	94, 95, 114
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	96, 136
Bst6I	CTCTTC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	114, 124, 387
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 291
BstNI	CCWGG	2 cut(s)	96, 136
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	94, 134, 261
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	114, 124, 387
Csp6I	GTAC	2 cut(s)	242, 349
CviAII	CATG	3 cut(s)	190, 245, 272
CviJI	RGCY	4 cut(s)	58, 113, 230, 285
CviKI_1	RGCY	4 cut(s)	58, 113, 230, 285
CviQI	GTAC	2 cut(s)	242, 349
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	114
Eco32I	GATATC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	94, 134
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	193, 248, 275
FaiI	YATR	9 cut(s)	69, 163, 165, 191, 240, 246, 273, 292, 315
FatI	CATG	3 cut(s)	189, 244, 271
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	121, 131
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	3 cut(s)	193, 248, 275
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	23, 90
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	41, 248, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 291
Hsp92II	CATG	3 cut(s)	193, 248, 275
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	79, 290
LpnPI	CCDG	6 cut(s)	21, 81, 108, 121, 148, 276
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	109, 303
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	32, 145
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	301, 308
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	32, 84
MnlI	CCTC	4 cut(s)	4, 10, 75, 346
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	96, 136, 263
MvaI	CCWGG	2 cut(s)	96, 136
MwoI	GCNNNNNNNGC	2 cut(s)	119, 291
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	193, 248, 275
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	1 cut(s)	248
PasI	CCCWGGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	31, 84
PpsI	GAGTC	2 cut(s)	31, 84
Psp6I	CCWGG	2 cut(s)	94, 134
PspGI	CCWGG	2 cut(s)	94, 134
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	243, 350
RsaNI	GTAC	2 cut(s)	242, 349
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	32, 84
ScrFI	CCNGG	3 cut(s)	96, 136, 263
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	3 cut(s)	60, 232, 287
SfaNI	GCATC	2 cut(s)	109, 303
Sse9I	AATT	2 cut(s)	301, 308
StyD4I	CCNGG	3 cut(s)	94, 134, 261
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	338
TasI	AATT	2 cut(s)	301, 308
TatI	WGTACW	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	39
XceI	RCATGY	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.