Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

121813 .. 128279

Gene Structure 6467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTTCCTGTTCAACTTCATGAGAGGTTTCAAGAGTTTTGATTGGGATTCTGGAAGCACACACGTCTATCATTGTTACGTCAACGTGGATGGGAGTTACAGATTCAAGGTTTTTTTTTCTGGTGCACAAGAGATATTCAAGATTCTCCCTCATACTTCTGTGGAGCGAAGCAGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTAAATCCAGAACACTACAACCCGGTTTTCCATGAAAAAAATAGCTCCTTATGCATCTGTAATTGTGAATTGTATGTATTGGGAGAAAAGATATCCTCGATTATTGAGTACCAAGCAGTTTCAAGATTTAACAAGGAAAGGATATATGATCCAATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATAGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTATAAAAGACATTAAAAAGTTACTTGCACACTTGACGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGGATACATTTATCCATGCGAAAATGTGATGACTCAAAAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTACAATTGCTGCGCTGCATTTGGGAGGTGCAAACTCTTCTACAACAACTGTTGTATGAAGATTTGGATGCTGCAAACTATAAAACTATTGGTGCTAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

300

Amino Acids

34.49

Weight (kDa)

8.21

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	710
AclWI	GGATC	2 cut(s)	284, 467
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	551, 611
AfaI	GTAC	2 cut(s)	434, 791
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	7 cut(s)	13, 31, 106, 139, 228, 281, 447
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	178, 218
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	3 cut(s)	314, 369, 530
AluI	AGCT	3 cut(s)	314, 369, 530
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	284, 467
AoxI	GGCC	1 cut(s)	195
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	4 cut(s)	206, 808, 813, 869
ApoI	RAATTY	2 cut(s)	551, 611
Asp700I	GAANNNNTTC	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	813
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	521, 764
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	4 cut(s)	193, 795, 800, 856
BccI	CCATC	4 cut(s)	83, 187, 501, 506
BciT130I	CCWGG	2 cut(s)	180, 220
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	4 cut(s)	207, 809, 814, 870
BlsI	GCNGC	4 cut(s)	208, 810, 815, 871
Bme1390I	CCNGG	3 cut(s)	180, 220, 347
BmgBI	CACGTC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	180, 220, 347
BmsI	GCATC	3 cut(s)	193, 387, 856
BpiI	GAAGAC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	178, 179, 198, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
BseBI	CCWGG	2 cut(s)	180, 220
BseDI	CCNNGG	4 cut(s)	178, 179, 198, 685
BseGI	GGATG	4 cut(s)	94, 198, 208, 871
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	193, 795, 800, 856
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	289, 472, 760
Bsp19I	CCATGG	1 cut(s)	685
BspANI	GGCC	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	18
BspPI	GGATC	2 cut(s)	284, 467
BssECI	CCNNGG	4 cut(s)	178, 179, 198, 685
BssMI	GATC	3 cut(s)	289, 472, 760
BssT1I	CCWWGG	2 cut(s)	198, 685
Bst2UI	CCWGG	2 cut(s)	180, 220
Bst4CI	ACNGT	1 cut(s)	849
Bst6I	CTCTTC	1 cut(s)	840
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	4 cut(s)	94, 198, 208, 871
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	292, 475, 763
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	3 cut(s)	289, 472, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 375
BstNI	CCWGG	2 cut(s)	180, 220
BstSCI	CCNGG	3 cut(s)	178, 218, 345
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	193, 795, 800, 856
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	685
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	94, 198, 208, 871
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	813
Csp6I	GTAC	2 cut(s)	433, 790
CviAII	CATG	7 cut(s)	19, 274, 356, 502, 686, 726, 764
CviJI	RGCY	9 cut(s)	197, 314, 369, 530, 581, 621, 629, 683, 899
CviKI_1	RGCY	9 cut(s)	197, 314, 369, 530, 581, 621, 629, 683, 899
CviQI	GTAC	2 cut(s)	433, 790
DpnI	GATC	3 cut(s)	291, 474, 762
DpnII	GATC	3 cut(s)	289, 472, 760
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco130I	CCWWGG	2 cut(s)	198, 685
Eco32I	GATATC	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	178, 218
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	198, 685
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	2 cut(s)	198, 685
FaeI	CATG	7 cut(s)	22, 277, 359, 505, 689, 729, 767
FatI	CATG	7 cut(s)	18, 273, 355, 501, 685, 725, 763
Fnu4HI	GCNGC	4 cut(s)	207, 809, 814, 870
FokI	GGATG	4 cut(s)	101, 205, 215, 878
Fsp4HI	GCNGC	4 cut(s)	207, 809, 814, 870
FspBI	CTAG	1 cut(s)	768
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	4 cut(s)	207, 809, 814, 870
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	7 cut(s)	22, 277, 359, 505, 689, 729, 767
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	6 cut(s)	47, 102, 142, 174, 485, 742
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	521, 764
Hpy166II	GTNNAC	4 cut(s)	82, 125, 535, 792
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	7 cut(s)	19, 31, 51, 139, 332, 447, 497
Hpy8I	GTNNAC	4 cut(s)	82, 125, 535, 792
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	1 cut(s)	849
HpyCH4IV	ACGT	4 cut(s)	63, 78, 84, 797
HpyCH4V	TGCA	8 cut(s)	125, 378, 557, 659, 678, 816, 829, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 375
HpySE526I	ACGT	4 cut(s)	63, 78, 84, 797
Hsp92II	CATG	7 cut(s)	22, 277, 359, 505, 689, 729, 767
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	289, 472, 760
LmnI	GCTCC	2 cut(s)	163, 374
LpnPI	CCDG	9 cut(s)	20, 36, 105, 165, 192, 205, 232, 345, 360
Lsp1109I	GCAGC	4 cut(s)	193, 795, 800, 856
LweI	GCATC	3 cut(s)	193, 387, 856
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	4 cut(s)	63, 78, 84, 797
MaeIII	GTNAC	6 cut(s)	74, 95, 259, 651, 770, 798
MalI	GATC	3 cut(s)	291, 474, 762
MboI	GATC	3 cut(s)	289, 472, 760
MboII	GAAGA	3 cut(s)	229, 827, 869
MfeI	CAATTG	1 cut(s)	803
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	5 cut(s)	385, 392, 551, 611, 803
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	168, 736
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	5 cut(s)	17, 159, 430, 683, 817
Mox20I	TGGCCA	1 cut(s)	197
Mph1103I	ATGCAT	1 cut(s)	380
MroXI	GAANNNNTTC	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	3 cut(s)	453, 645, 780
Msp20I	TGGCCA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	3 cut(s)	180, 220, 347
MunI	CAATTG	1 cut(s)	803
MvaI	CCWGG	2 cut(s)	180, 220
MwoI	GCNNNNNNNGC	2 cut(s)	203, 375
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	685
NdeII	GATC	3 cut(s)	289, 472, 760
NlaIII	CATG	7 cut(s)	22, 277, 359, 505, 689, 729, 767
NmuCI	GTSAC	2 cut(s)	259, 770
NsiI	ATGCAT	1 cut(s)	380
PagI	TCATGA	1 cut(s)	18
PasI	CCCWGGG	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	580
PfeI	GAWTC	4 cut(s)	47, 102, 142, 485
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	208, 810, 815, 871
PleI	GAGTC	2 cut(s)	168, 736
PpsI	GAGTC	2 cut(s)	168, 736
Psp6I	CCWGG	2 cut(s)	178, 218
PspGI	CCWGG	2 cut(s)	178, 218
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	434, 791
RsaNI	GTAC	2 cut(s)	433, 790
SaqAI	TTAA	3 cut(s)	453, 645, 780
SatI	GCNGC	4 cut(s)	207, 809, 814, 870
Sau3AI	GATC	3 cut(s)	289, 472, 760
SchI	GAGTC	2 cut(s)	168, 736
ScrFI	CCNGG	3 cut(s)	180, 220, 347
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	193, 387, 856
Sse9I	AATT	5 cut(s)	385, 392, 551, 611, 803
SspMI	CTAG	1 cut(s)	768
StyD4I	CCNGG	3 cut(s)	178, 218, 345
StyI	CCWWGG	2 cut(s)	198, 685
TaaI	ACNGT	1 cut(s)	849
TaiI	ACGT	4 cut(s)	66, 81, 87, 800
TaqI	TCGA	1 cut(s)	422
TasI	AATT	5 cut(s)	385, 392, 551, 611, 803
TatI	WGTACW	1 cut(s)	789
TfiI	GAWTC	4 cut(s)	47, 102, 142, 485
Tru1I	TTAA	3 cut(s)	453, 645, 780
Tru9I	TTAA	3 cut(s)	453, 645, 780
TseFI	GTSAC	2 cut(s)	259, 770
TseI	GCWGC	4 cut(s)	206, 808, 813, 869
Tsp45I	GTSAC	2 cut(s)	259, 770
TspDTI	ATGAA	4 cut(s)	7, 372, 494, 870
Van91I	CCANNNNNTGG	1 cut(s)	710
VneI	GTGCAC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	551, 611
XmnI	GAANNNNTTC	1 cut(s)	580
XspI	CTAG	1 cut(s)	768
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.