Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Reverse (-)

12281637 .. 12287683

Gene Structure 6047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAGATGGCCGCCGCGAAGGTTGAGCATGGAGACCGTGGAAGAGCAATACTCTCTCGGTACAAACACCGGCGCAGAAGCTGTTCGGAATCGAAGTGGACCGCGGCGTACACCGTCCGGTTTCGCACAAATGCTCCACCTCCACCGTGCGGTGTTGACTTCGGCAGCTTCCGTGATTTCAAGGAGGGCTCGCTCTCGTCCTCCACTCAAACAATTGTACCAAGGAAGAGAGACCGGACACTTTGGGATGTTTGGACGTATTGGACTATTGAGGGCCATGAGGTGCAGTGGGGCATTGTGTTCATGACCTTGGCAAGAATCGGGATAGGATATTCAAGCTTCTCCCTCATACTTGTGGAGCCAGCGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGGTTGTGTTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTACATCCAAAACACTACAACCCGGTTTTCCATGAAAAAATAGCTCCTTATGCATCTGTAGGTGCAGATGATGAGGTAGGTGCGGATGATGAGGAAGGTCGAAATGATCAGCTTAATTTCAACTCTTTCATCAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

219

Amino Acids

25.06

Weight (kDa)

7.68

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	17, 104
AciI	CCGC	6 cut(s)	12, 15, 102, 104, 150, 602
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	2 cut(s)	9, 388
AfaI	GTAC	4 cut(s)	62, 110, 219, 522
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	181, 336, 421, 476, 640
AjnI	CCWGG	2 cut(s)	371, 411
AluBI	AGCT	6 cut(s)	81, 168, 339, 509, 563, 631
AluI	AGCT	6 cut(s)	81, 168, 339, 509, 563, 631
Alw26I	GTCTC	2 cut(s)	27, 225
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	3 cut(s)	9, 274, 388
ApeKI	GCWGC	2 cut(s)	165, 399
Asp700I	GAANNNNTTC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	99, 274
AsuC2I	CCSGG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	99
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BalI	TGGCCA	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	177, 386
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	373, 413
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	2 cut(s)	27, 225
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	5 cut(s)	12, 15, 105, 166, 400
BlsI	GCNGC	5 cut(s)	13, 16, 106, 167, 401
Bme1390I	CCNGG	3 cut(s)	373, 413, 542
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	99, 274
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	3 cut(s)	373, 413, 542
BmsI	GCATC	2 cut(s)	386, 581
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpuMI	CCSGG	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	27, 225
BsaJI	CCNNGG	7 cut(s)	37, 102, 221, 309, 371, 372, 391
BsaWI	WCCGGW	2 cut(s)	117, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	373, 413
BseDI	CCNNGG	7 cut(s)	37, 102, 221, 309, 371, 372, 391
BseGI	GGATG	5 cut(s)	253, 391, 401, 523, 610
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	177, 386
BsgI	GTGCAG	2 cut(s)	305, 603
Bsh1236I	CGCG	2 cut(s)	17, 104
BshFI	GGCC	3 cut(s)	11, 276, 390
BsiSI	CCGG	4 cut(s)	70, 118, 235, 542
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	27, 225
BsnI	GGCC	3 cut(s)	11, 276, 390
Bso31I	GGTCTC	2 cut(s)	27, 225
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	2 cut(s)	484, 625
BspACI	CCGC	6 cut(s)	12, 15, 102, 104, 150, 602
BspANI	GGCC	3 cut(s)	11, 276, 390
BspFNI	CGCG	2 cut(s)	17, 104
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	479
BspQI	GCTCTTC	1 cut(s)	37
BspTNI	GGTCTC	2 cut(s)	27, 225
BsrFI	RCCGGY	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	7 cut(s)	37, 102, 221, 309, 371, 372, 391
BssMI	GATC	2 cut(s)	484, 625
BssT1I	CCWWGG	3 cut(s)	221, 309, 391
Bst2UI	CCWGG	2 cut(s)	373, 413
Bst4CI	ACNGT	3 cut(s)	38, 115, 147
Bst6I	CTCTTC	2 cut(s)	37, 221
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	191, 363
BstDSI	CCRYGG	2 cut(s)	37, 102
BstF5I	GGATG	5 cut(s)	253, 391, 401, 523, 610
BstFNI	CGCG	2 cut(s)	17, 104
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	487, 628
BstMAI	GTCTC	2 cut(s)	27, 225
BstMBI	GATC	2 cut(s)	484, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 569
BstNI	CCWGG	2 cut(s)	373, 413
BstSCI	CCNGG	3 cut(s)	371, 411, 540
BstSFI	CTRYAG	1 cut(s)	576
BstUI	CGCG	2 cut(s)	17, 104
BstV1I	GCAGC	2 cut(s)	177, 386
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	11, 276, 390
BtgI	CCRYGG	2 cut(s)	37, 102
BtsCI	GGATG	5 cut(s)	253, 391, 401, 523, 610
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	191, 363
CaiI	CAGNNNCTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	99, 274
Cfr42I	CCGCGG	1 cut(s)	105
Csp6I	GTAC	4 cut(s)	61, 109, 218, 521
CviAII	CATG	5 cut(s)	29, 278, 304, 469, 551
CviQI	GTAC	4 cut(s)	61, 109, 218, 521
DpnI	GATC	2 cut(s)	486, 627
DpnII	GATC	2 cut(s)	484, 625
EaeI	YGGCCR	2 cut(s)	9, 388
Eam1104I	CTCTTC	2 cut(s)	37, 221
EarI	CTCTTC	2 cut(s)	37, 221
Eco130I	CCWWGG	3 cut(s)	221, 309, 391
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	2 cut(s)	27, 225
Eco47I	GGWCC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	371, 411
EcoT14I	CCWWGG	3 cut(s)	221, 309, 391
EcoT22I	ATGCAT	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	3 cut(s)	221, 309, 391
FaeI	CATG	5 cut(s)	32, 281, 307, 472, 554
FatI	CATG	5 cut(s)	28, 277, 303, 468, 550
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	12, 15, 105, 166, 400
FokI	GGATG	5 cut(s)	260, 398, 408, 510, 617
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	5 cut(s)	12, 15, 105, 166, 400
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	5 cut(s)	12, 15, 105, 166, 400
HaeIII	GGCC	3 cut(s)	11, 276, 390
HapII	CCGG	4 cut(s)	70, 118, 235, 542
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	32, 281, 307, 472, 554
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	3 cut(s)	89, 318, 367
HpaII	CCGG	4 cut(s)	70, 118, 235, 542
Hpy166II	GTNNAC	3 cut(s)	99, 111, 157
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	304, 322
Hpy8I	GTNNAC	3 cut(s)	99, 111, 157
HpyAV	CCTTC	2 cut(s)	13, 608
HpyCH4III	ACNGT	3 cut(s)	38, 115, 147
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	286, 572, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 569
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	32, 281, 307, 472, 554
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	625
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	484, 625
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	139, 358, 568
LpnPI	CCDG	9 cut(s)	83, 131, 248, 358, 375, 385, 398, 425, 555
Lsp1109I	GCAGC	2 cut(s)	177, 386
LweI	GCATC	2 cut(s)	386, 581
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	2 cut(s)	486, 627
MboI	GATC	2 cut(s)	484, 625
MboII	GAAGA	4 cut(s)	16, 54, 238, 422
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	2 cut(s)	213, 634
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	150, 178, 211, 265, 274, 356, 586, 604
Mox20I	TGGCCA	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	2 cut(s)	353, 653
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	4 cut(s)	70, 118, 235, 542
MspR9I	CCNGG	3 cut(s)	373, 413, 542
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	373, 413
MvnI	CGCG	2 cut(s)	17, 104
MwoI	GCNNNNNNNGC	2 cut(s)	396, 569
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	2 cut(s)	484, 625
NlaIII	CATG	5 cut(s)	32, 281, 307, 472, 554
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	574
PagI	TCATGA	1 cut(s)	303
PasI	CCCWGGG	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	89, 318
PkrI	GCNGC	5 cut(s)	13, 16, 106, 167, 401
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	371, 411
PspGI	CCWGG	2 cut(s)	371, 411
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	99, 274
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	4 cut(s)	62, 110, 219, 522
RsaNI	GTAC	4 cut(s)	61, 109, 218, 521
RseI	CAYNNNNRTG	2 cut(s)	353, 653
SacII	CCGCGG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	5 cut(s)	12, 15, 105, 166, 400
Sau3AI	GATC	2 cut(s)	484, 625
Sau96I	GGNCC	2 cut(s)	99, 274
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	3 cut(s)	373, 413, 542
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	2 cut(s)	386, 581
SfcI	CTRYAG	1 cut(s)	576
Sfr303I	CCGCGG	1 cut(s)	105
SgrAI	CRCCGGYG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	353, 653
Sse9I	AATT	2 cut(s)	213, 634
SsiI	CCGC	6 cut(s)	12, 15, 102, 104, 150, 602
StyD4I	CCNGG	3 cut(s)	371, 411, 540
StyI	CCWWGG	3 cut(s)	221, 309, 391
TaaI	ACNGT	3 cut(s)	38, 115, 147
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	92, 619
TasI	AATT	2 cut(s)	213, 634
TatI	WGTACW	1 cut(s)	520
TauI	GCSGC	3 cut(s)	14, 17, 107
TfiI	GAWTC	2 cut(s)	89, 318
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	2 cut(s)	165, 399
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	17, 292, 567, 637
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.