Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

30572383 .. 30576671

Gene Structure 4289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGTTTGATGAATTACAGTCGTGCACAATTAGGGTTCATTCTCCTTGTAGCTGCTACTTCTCTGTTAGCAGCGAGTGAGGCCAAAACTATTGTCGTCGGAGGTTCTAAAGGCTGGCGTTTTGGTTTCAACTACACTGACTGGGCTCTCCAAAACAGTCCCTTTTACATCAACGATGAATTGGTGTTCAAGTATGGTCCGCCAAGCAAGACCAACTCTGGTTACAGCGTTTACTTGCTGCCAAACCTGTGGAGCTACATTACCTGTGATTTCAGCAAAGCCAAGATATTGGCGAGTGAGACTCAAGGAGGTAAGGGCTTTAAGTTGTCCTGCTGCAATCACTATTTTGTATTGATTGTTTTTTCTGGTGCACAAGAGATATTCAAGCTTCTCCCTCATACTTCTGTGGAGCCAAGCAGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTACATCCAGAACACTACAACCCGGTTTTCCATGAAAAAATAGCTCCTTATGCATCTGTAATTGTGAATTGTATGTATTGGGAGAAAAGATATCCTCGATTATTGAGTACCAAGCAGTTTCAAGATTTAACAAGGAAAGGATGTAAGCTTGTTGGTATCTCTGATATAACATGTGATATAGGGGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

253

Amino Acids

28.47

Weight (kDa)

8.89

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	441
AfaI	GTAC	2 cut(s)	573, 679
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	130, 190, 385, 474, 527, 692
AjnI	CCWGG	2 cut(s)	424, 464
AluBI	AGCT	6 cut(s)	53, 255, 388, 560, 614, 718
AluI	AGCT	6 cut(s)	53, 255, 388, 560, 614, 718
Alw21I	GWGCWC	2 cut(s)	28, 373
Alw26I	GTCTC	1 cut(s)	293
Alw44I	GTGCAC	2 cut(s)	24, 369
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	2 cut(s)	81, 441
ApaLI	GTGCAC	2 cut(s)	24, 369
ApeKI	GCWGC	5 cut(s)	53, 71, 238, 333, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	2 cut(s)	28, 373
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	2 cut(s)	28, 373
BbvI	GCAGC	5 cut(s)	40, 83, 225, 320, 439
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	2 cut(s)	426, 466
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	5 cut(s)	54, 72, 239, 334, 453
BlsI	GCNGC	5 cut(s)	55, 73, 240, 335, 454
Bme1390I	CCNGG	3 cut(s)	426, 466, 593
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	3 cut(s)	426, 466, 593
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	439, 632
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	424, 425, 444
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	426, 466
BseDI	CCNNGG	3 cut(s)	424, 425, 444
BseGI	GGATG	4 cut(s)	444, 454, 574, 716
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	2 cut(s)	28, 373
BseXI	GCAGC	5 cut(s)	40, 83, 225, 320, 439
BshFI	GGCC	2 cut(s)	83, 443
BsiHKAI	GWGCWC	2 cut(s)	28, 373
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	83, 443
Bsp1286I	GDGCHC	3 cut(s)	28, 148, 373
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	535, 754
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	83, 443
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	424, 425, 444
BssMI	GATC	2 cut(s)	535, 754
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	426, 466
Bst4CI	ACNGT	2 cut(s)	20, 158
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	116
BstF5I	GGATG	4 cut(s)	444, 454, 574, 716
BstKTI	GATC	2 cut(s)	538, 757
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	535, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 449, 620
BstNI	CCWGG	2 cut(s)	426, 466
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	3 cut(s)	424, 464, 591
BstSLI	GKGCMC	2 cut(s)	28, 373
BstV1I	GCAGC	5 cut(s)	40, 83, 225, 320, 439
BstV2I	GAAGAC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	3 cut(s)	249, 289, 494
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	83, 443
BtsCI	GGATG	4 cut(s)	444, 454, 574, 716
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	572, 678
CviAII	CATG	3 cut(s)	520, 602, 741
CviQI	GTAC	2 cut(s)	572, 678
DpnI	GATC	2 cut(s)	537, 756
DpnII	GATC	2 cut(s)	535, 754
EaeI	YGGCCR	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	424, 464
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	523, 605, 744
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	519, 601, 740
Fnu4HI	GCNGC	5 cut(s)	54, 72, 239, 334, 453
FokI	GGATG	4 cut(s)	451, 461, 561, 723
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	54, 72, 239, 334, 453
GluI	GCNGC	5 cut(s)	54, 72, 239, 334, 453
HaeIII	GGCC	2 cut(s)	83, 443
HapII	CCGG	1 cut(s)	593
Hin1II	CATG	3 cut(s)	523, 605, 744
HindIII	AAGCTT	2 cut(s)	386, 716
HinfI	GANTC	2 cut(s)	301, 420
HpaII	CCGG	1 cut(s)	593
Hpy166II	GTNNAC	3 cut(s)	26, 232, 371
Hpy188I	TCNGA	2 cut(s)	101, 733
Hpy188III	TCNNGA	2 cut(s)	578, 692
Hpy8I	GTNNAC	3 cut(s)	26, 232, 371
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	20, 158
HpyCH4V	TGCA	4 cut(s)	26, 336, 371, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 449, 620
Hsp92II	CATG	3 cut(s)	523, 605, 744
Kzo9I	GATC	2 cut(s)	535, 754
LmnI	GCTCC	3 cut(s)	252, 409, 619
Lsp1109I	GCAGC	5 cut(s)	40, 83, 225, 320, 439
LweI	GCATC	2 cut(s)	439, 632
MaeIII	GTNAC	2 cut(s)	221, 505
MalI	GATC	2 cut(s)	537, 756
MboI	GATC	2 cut(s)	535, 754
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	28, 148, 373
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	5 cut(s)	13, 29, 179, 630, 637
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	295, 414
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	73, 95, 302, 405, 675
Mox20I	TGGCCA	1 cut(s)	443
Mph1103I	ATGCAT	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	321, 698
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	3 cut(s)	426, 466, 593
MvaI	CCWGG	2 cut(s)	426, 466
MwoI	GCNNNNNNNGC	3 cut(s)	80, 449, 620
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	2 cut(s)	535, 754
NlaIII	CATG	3 cut(s)	523, 605, 744
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	1 cut(s)	744
PasI	CCCWGGG	1 cut(s)	425
PciI	ACATGT	1 cut(s)	740
PkrI	GCNGC	5 cut(s)	55, 73, 240, 335, 454
PleI	GAGTC	2 cut(s)	295, 414
PpsI	GAGTC	2 cut(s)	295, 414
PscI	ACATGT	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	424, 464
PspGI	CCWGG	2 cut(s)	424, 464
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	2 cut(s)	573, 679
RsaNI	GTAC	2 cut(s)	572, 678
SaqAI	TTAA	2 cut(s)	321, 698
SatI	GCNGC	5 cut(s)	54, 72, 239, 334, 453
Sau3AI	GATC	2 cut(s)	535, 754
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	295, 414
ScrFI	CCNGG	3 cut(s)	426, 466, 593
SduI	GDGCHC	3 cut(s)	28, 148, 373
SfaNI	GCATC	2 cut(s)	439, 632
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	5 cut(s)	13, 29, 179, 630, 637
SsiI	CCGC	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	424, 464, 591
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	20, 158
TaqI	TCGA	1 cut(s)	667
TasI	AATT	5 cut(s)	13, 29, 179, 630, 637
TatI	WGTACW	1 cut(s)	571
Tru1I	TTAA	2 cut(s)	321, 698
Tru9I	TTAA	2 cut(s)	321, 698
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	5 cut(s)	53, 71, 238, 333, 452
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	26, 28, 192, 618
TspRI	CASTG	1 cut(s)	142
VneI	GTGCAC	2 cut(s)	24, 369
VpaK11BI	GGWCC	1 cut(s)	197
XceI	RCATGY	1 cut(s)	744
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.