Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

39466553 .. 39476831

Gene Structure 10279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG317400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTGTTTTTTCTGGTGCACAAGAGATATTCAAGCTTCTCCCTCATACTTCTGTGGAGCCAAGCAGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTACATCCAGAACACTACAACCTGGTTTTCCATGAAAAAATAGCTCCTTATGCATCTGTAATTGTGAATTGTATGTATTGGGAGAAAAGATATCCTCGATTATTGAGTACCAAGCAGTTTCAAGATTTAACAAGGAAAGGATGTAAGCTTGTTGGTATCTCTGATATAACACGTGATATAGGGGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

136

Amino Acids

15.58

Weight (kDa)

8.87

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	90
AcvI	CACGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	222, 328
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	34, 123, 176, 341
AjnI	CCWGG	3 cut(s)	73, 113, 240
AluBI	AGCT	4 cut(s)	37, 209, 263, 367
AluI	AGCT	4 cut(s)	37, 209, 263, 367
Alw21I	GWGCWC	1 cut(s)	22
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	90
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	3 cut(s)	75, 115, 242
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	75, 115, 242
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	75, 115, 242
BmsI	GCATC	2 cut(s)	88, 281
BpiI	GAAGAC	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	73, 74, 93
BseBI	CCWGG	3 cut(s)	75, 115, 242
BseDI	CCNNGG	3 cut(s)	73, 74, 93
BseGI	GGATG	4 cut(s)	93, 103, 223, 365
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	184, 403
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	73, 74, 93
BssMI	GATC	2 cut(s)	184, 403
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	75, 115, 242
BstAUI	TGTACA	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	392
BstF5I	GGATG	4 cut(s)	93, 103, 223, 365
BstKTI	GATC	2 cut(s)	187, 406
BstMBI	GATC	2 cut(s)	184, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 269
BstNI	CCWGG	3 cut(s)	75, 115, 242
BstSCI	CCNGG	3 cut(s)	73, 113, 240
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	4 cut(s)	93, 103, 223, 365
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	221, 327
CviAII	CATG	2 cut(s)	169, 251
CviJI	RGCY	7 cut(s)	5, 37, 61, 92, 209, 263, 367
CviKI_1	RGCY	7 cut(s)	5, 37, 61, 92, 209, 263, 367
CviQI	GTAC	2 cut(s)	221, 327
DpnI	GATC	2 cut(s)	186, 405
DpnII	GATC	2 cut(s)	184, 403
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	311
Eco72I	CACGTG	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	73, 113, 240
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	172, 254
FatI	CATG	2 cut(s)	168, 250
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	4 cut(s)	100, 110, 210, 372
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	172, 254
HindIII	AAGCTT	2 cut(s)	35, 365
HinfI	GANTC	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	227, 341
Hpy8I	GTNNAC	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	20, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 269
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	2 cut(s)	172, 254
Kzo9I	GATC	2 cut(s)	184, 403
LmnI	GCTCC	2 cut(s)	58, 268
LpnPI	CCDG	7 cut(s)	60, 87, 100, 127, 227, 240, 254
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	88, 281
MabI	ACCWGGT	1 cut(s)	240
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	186, 405
MboI	GATC	2 cut(s)	184, 403
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	279, 286
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	54, 324
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	92
MspR9I	CCNGG	3 cut(s)	75, 115, 242
MvaI	CCWGG	3 cut(s)	75, 115, 242
MwoI	GCNNNNNNNGC	2 cut(s)	98, 269
NdeII	GATC	2 cut(s)	184, 403
NlaIII	CATG	2 cut(s)	172, 254
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	274
PasI	CCCWGGG	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	63
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	73, 113, 240
PspCI	CACGTG	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	73, 113, 240
PspN4I	GGNNCC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	222, 328
RsaNI	GTAC	2 cut(s)	221, 327
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	184, 403
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	3 cut(s)	75, 115, 242
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	6 cut(s)	39, 211, 243, 265, 369, 394
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	88, 281
Sse9I	AATT	2 cut(s)	279, 286
StyD4I	CCNGG	3 cut(s)	73, 113, 240
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	279, 286
TatI	WGTACW	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.