Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Reverse (-)

34172097 .. 34173515

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATAGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAAATTTTTGGCTATTTGGCTTCTACAAAAGACATTAAAAAGTTACTTGCACACTTGACAAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGGATACATTTATCCATGCGAAAATGTGATGACTCAAAGTAAGTTTCAAATCCATCTCATGTCTTACCCCACCCCTCTATATACTTGCCTTGCCTTCATTTTCTTAGAATCATCAAAAGACCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTATCTCTCAGTGGTCACTTGTTTGATCAATTTCTGATAAATGAGGCCTTAAATATTATTGAACCTGCAAGTGGATCCTTCCACTTAGTGAAGTGTCAAGTTGGTCCGAGTTCTCATGCTATGTCATATTCAGAACTCGAAGTGAGTAGGCCTCAAGTGCTTTTCGATCATATGAGACTTACGTCCTCTTTCTCTATCTACCTAATTAGCTGTCTCTTTAGAATTACTTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

209

Amino Acids

23.56

Weight (kDa)

6.85

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saccharop_dh_N	PF04455	131 - 182	6.6e-12	LOR/SDH bifunctional enzyme conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccB7I	CCANNNNNTGG	1 cut(s)	233
AclWI	GGATC	2 cut(s)	462, 475
AcsI	RAATTY	2 cut(s)	74, 135
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	233, 464
AgsI	TTSAA	2 cut(s)	281, 455
AluBI	AGCT	2 cut(s)	53, 603
AluI	AGCT	2 cut(s)	53, 603
Alw26I	GTCTC	3 cut(s)	114, 562, 611
AlwI	GGATC	2 cut(s)	462, 475
AoxI	GGCC	2 cut(s)	438, 542
ApoI	RAATTY	2 cut(s)	74, 135
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	44, 356
AvaII	GGWCC	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BamHI	GGATCC	1 cut(s)	467
BccI	CCATC	3 cut(s)	24, 29, 294
BciVI	GTATCC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	114, 562, 611
BfaI	CTAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	469
BoxI	GACNNNNGTC	1 cut(s)	574
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpuEI	CTTGAG	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 464
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	233, 464
BseMII	CTCAG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	440, 544
BslI	CCNNNNNNNGG	2 cut(s)	233, 464
BsmAI	GTCTC	3 cut(s)	114, 562, 611
BsnI	GGCC	2 cut(s)	440, 544
Bsp143I	GATC	3 cut(s)	418, 467, 559
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	2 cut(s)	440, 544
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	462, 475
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	418, 467, 559
BssT1I	CCWWGG	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	337, 401, 478
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	421, 470, 562
BstMAI	GTCTC	3 cut(s)	114, 562, 611
BstMBI	GATC	3 cut(s)	418, 467, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstPAI	GACNNNNGTC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	440, 544
BtgI	CCRYGG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	6 cut(s)	25, 209, 249, 292, 356, 509
CviJI	RGCY	8 cut(s)	53, 104, 144, 152, 206, 440, 544, 603
CviKI_1	RGCY	8 cut(s)	53, 104, 144, 152, 206, 440, 544, 603
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	337, 401, 478
DpnI	GATC	3 cut(s)	420, 469, 561
DpnII	GATC	3 cut(s)	418, 467, 559
DraIII	CACNNNGTG	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	2 cut(s)	440, 544
Eco47I	GGWCC	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	6 cut(s)	28, 212, 252, 295, 359, 512
FatI	CATG	6 cut(s)	24, 208, 248, 291, 355, 508
FauNDI	CATATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	418
FspBI	CTAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	440, 544
Hin1II	CATG	6 cut(s)	28, 212, 252, 295, 359, 512
HinfI	GANTC	3 cut(s)	8, 265, 341
HphI	GGTGA	2 cut(s)	44, 356
Hpy166II	GTNNAC	2 cut(s)	58, 384
Hpy188I	TCNGA	4 cut(s)	133, 429, 501, 526
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	58, 384
HpyAV	CCTTC	3 cut(s)	23, 337, 481
HpyCH4IV	ACGT	2 cut(s)	389, 575
HpyCH4V	TGCA	4 cut(s)	80, 182, 201, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	3 cut(s)	337, 401, 478
HpySE526I	ACGT	2 cut(s)	389, 575
Hsp92II	CATG	6 cut(s)	28, 212, 252, 295, 359, 512
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	418, 467, 559
LpnPI	CCDG	1 cut(s)	471
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	389, 575
MaeIII	GTNAC	4 cut(s)	174, 362, 407, 623
MalI	GATC	3 cut(s)	420, 469, 561
MboI	GATC	3 cut(s)	418, 467, 559
MflI	RGATCY	1 cut(s)	467
MluCI	AATT	5 cut(s)	74, 135, 422, 597, 615
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	206, 318, 430, 555, 589
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	168, 372, 443
MspA1I	CMGCKG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	550
NcoI	CCATGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	3 cut(s)	418, 467, 559
NlaIII	CATG	6 cut(s)	28, 212, 252, 295, 359, 512
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	362, 407
PceI	AGGCCT	2 cut(s)	440, 544
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	8, 341
PflMI	CCANNNNNTGG	1 cut(s)	233
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	168, 372, 443
Sau3AI	GATC	3 cut(s)	418, 467, 559
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	259
SetI	ASST	8 cut(s)	34, 55, 89, 392, 460, 578, 597, 605
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	5 cut(s)	74, 135, 422, 597, 615
SseBI	AGGCCT	2 cut(s)	440, 544
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	2 cut(s)	440, 544
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	2 cut(s)	392, 578
TaqI	TCGA	2 cut(s)	531, 558
TasI	AATT	5 cut(s)	74, 135, 422, 597, 615
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	8, 341
Tru1I	TTAA	3 cut(s)	168, 372, 443
Tru9I	TTAA	3 cut(s)	168, 372, 443
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	2 cut(s)	362, 407
Tsp45I	GTSAC	2 cut(s)	362, 407
TspDTI	ATGAA	2 cut(s)	17, 319
TspRI	CASTG	1 cut(s)	409
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	2 cut(s)	74, 135
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.