Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

57533094 .. 57533748

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAAGATTCTTACCATCAAAACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATAGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTACAAAAGACATTAAAAAGTTACTTGCACACTTGATGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGGATACATTTATCCATGCGAAAATGTGATGACTCAAAAGAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

9.17

Isoelectric Point (pI)

18.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	74, 134
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	233
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	114
ApoI	RAATTY	2 cut(s)	74, 134
Asp700I	GAANNNNTTC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	44, 289
BccI	CCATC	2 cut(s)	24, 29
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	4 cut(s)	25, 209, 249, 289
CviJI	RGCY	5 cut(s)	53, 104, 144, 152, 206
CviKI_1	RGCY	5 cut(s)	53, 104, 144, 152, 206
CviQI	GTAC	1 cut(s)	315
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	28, 212, 252, 292
FaiI	YATR	9 cut(s)	26, 46, 93, 125, 203, 210, 234, 250, 290
FatI	CATG	4 cut(s)	24, 208, 248, 288
FspBI	CTAG	1 cut(s)	293
Hin1II	CATG	4 cut(s)	28, 212, 252, 292
HinfI	GANTC	2 cut(s)	8, 265
HphI	GGTGA	2 cut(s)	44, 289
Hpy166II	GTNNAC	2 cut(s)	58, 317
Hpy188I	TCNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	58, 317
HpyAV	CCTTC	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	80, 182, 201
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	28, 212, 252, 292
Kzo9I	GATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	174, 295
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MluCI	AATT	2 cut(s)	74, 134
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	168, 305
MspA1I	CMGCKG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	4 cut(s)	28, 212, 252, 292
NmuCI	GTSAC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	233
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	168, 305
Sau3AI	GATC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	259
SetI	ASST	4 cut(s)	34, 55, 89, 325
SgeI	CNNG	9 cut(s)	37, 191, 199, 210, 221, 261, 301, 305, 321
Sse9I	AATT	2 cut(s)	74, 134
SspMI	CTAG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	325
TasI	AATT	2 cut(s)	74, 134
TatI	WGTACW	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	168, 305
Tru9I	TTAA	2 cut(s)	168, 305
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	17, 206
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	2 cut(s)	74, 134
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.