Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

30576805 .. 30579134

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATTGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTACAAAAGGCATTAAAAAGTTACTTGCACACTTGATGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGACTCAGAAGAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTATCTCTCAGTGGTCACTTGTTTGATCAATTTTTGATAAATGAGGCCTTAAATATTATTGAACCTGCAAGTGGATCCTTCCTCTTAGTGAAGTGTCAAGTTGGTCCGAGTTCTCATGCTTTGTCATACTCAGAACTCGAAGTAGGTGCAGATGATGAGTTTTTGTTTTTAAATAGACGTGGGTTTGGAGAGATGCCCACTAATAACTATGTCGAGAGCAGGTGGGTCTATCTGGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

179

Amino Acids

20.06

Weight (kDa)

5.81

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saccharop_dh_N	PF04455	99 - 152	3.4e-12	LOR/SDH bifunctional enzyme conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	507
Acc36I	ACCTGC	2 cut(s)	370, 507
AclWI	GGATC	2 cut(s)	366, 379
AcsI	RAATTY	2 cut(s)	74, 134
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	476
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	366, 379
AoxI	GGCC	1 cut(s)	342
ApoI	RAATTY	2 cut(s)	74, 134
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	44, 260
AvaII	GGWCC	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BamHI	GGATCC	1 cut(s)	371
BccI	CCATC	2 cut(s)	24, 29
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	264
BfuAI	ACCTGC	2 cut(s)	370, 507
Bme18I	GGWCC	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	373
BmsI	GCATC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	3 cut(s)	252, 319, 441
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	256, 322, 371
Bsp19I	CCATGG	1 cut(s)	208
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	3 cut(s)	251, 318, 440
BspLI	GGNNCC	1 cut(s)	373
BspMI	ACCTGC	2 cut(s)	370, 507
BspPI	GGATC	2 cut(s)	366, 379
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	3 cut(s)	256, 322, 371
BssT1I	CCWWGG	1 cut(s)	208
BstDEI	CTNAG	4 cut(s)	238, 305, 382, 427
BstDSI	CCRYGG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	259, 325, 374
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	256, 322, 371
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	2 cut(s)	370, 507
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	25, 209, 260, 413
CviJI	RGCY	6 cut(s)	53, 104, 144, 152, 206, 344
CviKI_1	RGCY	6 cut(s)	53, 104, 144, 152, 206, 344
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	238, 305, 382, 427
DpnI	GATC	3 cut(s)	258, 324, 373
DpnII	GATC	3 cut(s)	256, 322, 371
DraI	TTTAAA	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	28, 212, 263, 416
FatI	CATG	4 cut(s)	24, 208, 259, 412
FbaI	TGATCA	1 cut(s)	322
FspBI	CTAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	28, 212, 263, 416
HinfI	GANTC	2 cut(s)	8, 236
HphI	GGTGA	2 cut(s)	44, 260
Hpy166II	GTNNAC	2 cut(s)	58, 288
Hpy188I	TCNGA	4 cut(s)	133, 241, 405, 430
Hpy188III	TCNNGA	2 cut(s)	20, 511
Hpy8I	GTNNAC	2 cut(s)	58, 288
HpyAV	CCTTC	2 cut(s)	23, 385
HpyCH4IV	ACGT	2 cut(s)	293, 475
HpyCH4V	TGCA	5 cut(s)	80, 182, 201, 365, 446
HpyF3I	CTNAG	4 cut(s)	238, 305, 382, 427
HpySE526I	ACGT	2 cut(s)	293, 475
Hsp92II	CATG	4 cut(s)	28, 212, 263, 416
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	256, 322, 371
LpnPI	CCDG	3 cut(s)	375, 502, 515
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	2 cut(s)	293, 475
MaeIII	GTNAC	3 cut(s)	174, 266, 311
MalI	GATC	3 cut(s)	258, 324, 373
MboI	GATC	3 cut(s)	256, 322, 371
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	371
MluCI	AATT	3 cut(s)	74, 134, 326
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	206, 334, 389
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	4 cut(s)	168, 276, 347, 467
MspA1I	CMGCKG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	3 cut(s)	256, 322, 371
NlaIII	CATG	4 cut(s)	28, 212, 263, 416
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	266, 311
PaqCI	CACCTGC	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	168, 276, 347, 467
Sau3AI	GATC	3 cut(s)	256, 322, 371
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	230
SetI	ASST	8 cut(s)	34, 55, 89, 296, 364, 445, 478, 521
SfaNI	GCATC	1 cut(s)	480
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	3 cut(s)	74, 134, 326
SseBI	AGGCCT	1 cut(s)	344
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	208
TaiI	ACGT	2 cut(s)	296, 478
TaqI	TCGA	2 cut(s)	435, 510
TasI	AATT	3 cut(s)	74, 134, 326
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	168, 276, 347, 467
Tru9I	TTAA	4 cut(s)	168, 276, 347, 467
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	266, 311
Tsp45I	GTSAC	2 cut(s)	266, 311
TspDTI	ATGAA	2 cut(s)	17, 206
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	2 cut(s)	74, 134
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.