Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

121486 .. 125110

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTAGATGAGGGAGAGGAAGAGTCTGTTTTTTCTGGTGCACAAGAGATATTCAAGATTCTCCCTCATACTTCTGTGGAGCGAAGCAGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTAAATCCAGAACACTACAACCCGGTTTTCCATGAAAAAAATAGCTCCTTATGCATCTGTAATTGTGAATTGTATGTATTGGGAGAAAAGATATCCTCGATTATTGAGTACCAAGCAGTTTCAAGATTTAACAAGGAAAGGATATATGATCCAATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATAGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTATAAAAGACATTAAAAAGTTACTTGCACACTTGACGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGGATACATTTATCCATGCGAAAATGTGATGACTCAAAAGAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

239

Amino Acids

27.17

Weight (kDa)

7.09

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	626
AclWI	GGATC	2 cut(s)	200, 383
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	467, 527
AfaI	GTAC	2 cut(s)	350, 709
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	55, 144, 197, 363
AjnI	CCWGG	2 cut(s)	94, 134
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	3 cut(s)	230, 285, 446
AluI	AGCT	3 cut(s)	230, 285, 446
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	507
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	200, 383
AoxI	GGCC	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	467, 527
Asp700I	GAANNNNTTC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	437, 682
BaeGI	GKGCMC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	3 cut(s)	103, 417, 422
BciT130I	CCWGG	2 cut(s)	96, 136
BciVI	GTATCC	1 cut(s)	623
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	96, 136, 263
BmrFI	CCNGG	3 cut(s)	96, 136, 263
BmsI	GCATC	2 cut(s)	109, 303
BpiI	GAAGAC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	4 cut(s)	94, 95, 114, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
BseBI	CCWGG	2 cut(s)	96, 136
BseDI	CCNNGG	4 cut(s)	94, 95, 114, 601
BseGI	GGATG	2 cut(s)	114, 124
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	205, 388, 678
Bsp19I	CCATGG	1 cut(s)	601
BspANI	GGCC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	200, 383
BssECI	CCNNGG	4 cut(s)	94, 95, 114, 601
BssMI	GATC	3 cut(s)	205, 388, 678
BssT1I	CCWWGG	2 cut(s)	114, 601
Bst2UI	CCWGG	2 cut(s)	96, 136
Bst6I	CTCTTC	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	114, 124
BstKTI	GATC	3 cut(s)	208, 391, 681
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	3 cut(s)	205, 388, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 291
BstNI	CCWGG	2 cut(s)	96, 136
BstSCI	CCNGG	3 cut(s)	94, 134, 261
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	114, 124
Csp6I	GTAC	2 cut(s)	349, 708
CviAII	CATG	6 cut(s)	190, 272, 418, 602, 642, 682
CviJI	RGCY	8 cut(s)	113, 230, 285, 446, 497, 537, 545, 599
CviKI_1	RGCY	8 cut(s)	113, 230, 285, 446, 497, 537, 545, 599
CviQI	GTAC	2 cut(s)	349, 708
DpnI	GATC	3 cut(s)	207, 390, 680
DpnII	GATC	3 cut(s)	205, 388, 678
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	114, 601
Eco32I	GATATC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	94, 134
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	114, 601
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	114, 601
FaeI	CATG	6 cut(s)	193, 275, 421, 605, 645, 685
FatI	CATG	6 cut(s)	189, 271, 417, 601, 641, 681
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	121, 131
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	6 cut(s)	193, 275, 421, 605, 645, 685
HinfI	GANTC	5 cut(s)	23, 58, 90, 401, 658
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	437, 682
Hpy166II	GTNNAC	3 cut(s)	41, 451, 710
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	4 cut(s)	55, 248, 363, 413
Hpy8I	GTNNAC	3 cut(s)	41, 451, 710
HpyAV	CCTTC	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	5 cut(s)	41, 294, 473, 575, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 291
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	6 cut(s)	193, 275, 421, 605, 645, 685
Kzo9I	GATC	3 cut(s)	205, 388, 678
LmnI	GCTCC	2 cut(s)	79, 290
LpnPI	CCDG	7 cut(s)	21, 81, 108, 121, 148, 261, 276
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	109, 303
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	3 cut(s)	175, 567, 688
MalI	GATC	3 cut(s)	207, 390, 680
MboI	GATC	3 cut(s)	205, 388, 678
MboII	GAAGA	2 cut(s)	32, 145
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	4 cut(s)	301, 308, 467, 527
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	3 cut(s)	32, 84, 652
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	5 cut(s)	4, 10, 75, 346, 599
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	3 cut(s)	369, 561, 698
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	96, 136, 263
MvaI	CCWGG	2 cut(s)	96, 136
MwoI	GCNNNNNNNGC	2 cut(s)	119, 291
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	3 cut(s)	205, 388, 678
NlaIII	CATG	6 cut(s)	193, 275, 421, 605, 645, 685
NmuCI	GTSAC	2 cut(s)	175, 688
NsiI	ATGCAT	1 cut(s)	296
PasI	CCCWGGG	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	58, 401
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	3 cut(s)	31, 84, 652
PpsI	GAGTC	3 cut(s)	31, 84, 652
Psp6I	CCWGG	2 cut(s)	94, 134
PspGI	CCWGG	2 cut(s)	94, 134
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	350, 709
RsaNI	GTAC	2 cut(s)	349, 708
SaqAI	TTAA	3 cut(s)	369, 561, 698
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	205, 388, 678
SchI	GAGTC	3 cut(s)	32, 84, 652
ScrFI	CCNGG	3 cut(s)	96, 136, 263
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	6 cut(s)	232, 287, 427, 448, 482, 718
SfaNI	GCATC	2 cut(s)	109, 303
Sse9I	AATT	4 cut(s)	301, 308, 467, 527
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	3 cut(s)	94, 134, 261
StyI	CCWWGG	2 cut(s)	114, 601
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	338
TasI	AATT	4 cut(s)	301, 308, 467, 527
TatI	WGTACW	1 cut(s)	707
TfiI	GAWTC	2 cut(s)	58, 401
Tru1I	TTAA	3 cut(s)	369, 561, 698
Tru9I	TTAA	3 cut(s)	369, 561, 698
TseFI	GTSAC	2 cut(s)	175, 688
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	175, 688
TspDTI	ATGAA	2 cut(s)	288, 410
Van91I	CCANNNNNTGG	1 cut(s)	626
VneI	GTGCAC	1 cut(s)	39
XapI	RAATTY	2 cut(s)	467, 527
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	1 cut(s)	686
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.