Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

121486 .. 125496

Gene Structure 4011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTAGATGAGGGAGAGGAAGAGTCTGTTTTTTCTGGTGCACAAGAGATATTCAAGATTCTCCCTCATACTTCTGTGGAGCGAAGCAGACTCCCAGGGATATTTGGGATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACATGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGCTGATTATTATGTAAATCCAGAACACTACAACCCGGTTTTCCATGAAAAAAATAGCTCCTTATGCATCTGTAATTGTGAATTGTATGTATTGGGAGAAAAGATATCCTCGATTATTGAGTACCAAGCAGTTTCAAGATTTAACAAGGAAAGGATATATGATCCAATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATAGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTATAAAAGACATTAAAAAGTTACTTGCACACTTGACGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGGATACATTTATCCATGCGAAAATGTGATGACTCAAAGTAAGTTTCAAATCCATCTCATGTCTTACCCCACCCCTCTATATACTTGCCTTGCCTTCATTTTCTTAGAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTATCTCTCAGTGGTCACTTGTTTGATCAATTTCTGATAAATGAGGCCTTAAATATTATTGAACCTGCAAGTGGATCCTTCCACTTAGTGAAGTGTCAAGTTGGTCCGAGTTCTCATGCTATGTCATACTCAGAACTCGAAAATAGTTTTGGTTTGATGAAACTACAGTTCTTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

321

Amino Acids

36.32

Weight (kDa)

6.2

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saccharop_dh_N	PF04455	262 - 309	3.5e-10	LOR/SDH bifunctional enzyme conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	859
AccB7I	CCANNNNNTGG	1 cut(s)	626
AclWI	GGATC	4 cut(s)	200, 383, 855, 868
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	467, 527
AdeI	CACNNNGTG	1 cut(s)	874
AfaI	GTAC	2 cut(s)	350, 776
AfiI	CCNNNNNNNGG	2 cut(s)	626, 857
AgsI	TTSAA	6 cut(s)	55, 144, 197, 363, 674, 848
AjnI	CCWGG	2 cut(s)	94, 134
AjuI	GAANNNNNNNTTGG	4 cut(s)	385, 417, 918, 950
AluBI	AGCT	3 cut(s)	230, 285, 446
AluI	AGCT	3 cut(s)	230, 285, 446
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	507
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	4 cut(s)	200, 383, 855, 868
AoxI	GGCC	2 cut(s)	111, 831
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	467, 527
Asp700I	GAANNNNTTC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	890
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	437, 749
AvaII	GGWCC	1 cut(s)	890
BaeGI	GKGCMC	1 cut(s)	43
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BalI	TGGCCA	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	4 cut(s)	103, 417, 422, 687
BciT130I	CCWGG	2 cut(s)	96, 136
BciVI	GTATCC	1 cut(s)	623
BclI	TGATCA	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	950
BfuAI	ACCTGC	1 cut(s)	859
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	96, 136, 263
Bme18I	GGWCC	1 cut(s)	890
BmgT120I	GGNCC	1 cut(s)	890
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	3 cut(s)	96, 136, 263
BmsI	GCATC	2 cut(s)	109, 303
BpiI	GAAGAC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	4 cut(s)	94, 95, 114, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 857
BseBI	CCWGG	2 cut(s)	96, 136
BseDI	CCNNGG	4 cut(s)	94, 95, 114, 601
BseGI	GGATG	2 cut(s)	114, 124
BseLI	CCNNNNNNNGG	2 cut(s)	626, 857
BseMII	CTCAG	2 cut(s)	808, 930
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	2 cut(s)	113, 833
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	2 cut(s)	626, 857
BsmAI	GTCTC	1 cut(s)	507
BsnI	GGCC	2 cut(s)	113, 833
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	205, 388, 745, 811, 860
Bsp19I	CCATGG	1 cut(s)	601
BspANI	GGCC	2 cut(s)	113, 833
BspCNI	CTCAG	2 cut(s)	807, 929
BspLI	GGNNCC	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	4 cut(s)	200, 383, 855, 868
BssECI	CCNNGG	4 cut(s)	94, 95, 114, 601
BssMI	GATC	5 cut(s)	205, 388, 745, 811, 860
BssT1I	CCWWGG	2 cut(s)	114, 601
Bst2UI	CCWGG	2 cut(s)	96, 136
Bst4CI	ACNGT	1 cut(s)	954
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	5 cut(s)	730, 794, 871, 916, 958
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	114, 124
BstKTI	GATC	5 cut(s)	208, 391, 748, 814, 863
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	5 cut(s)	205, 388, 745, 811, 860
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 291
BstNI	CCWGG	2 cut(s)	96, 136
BstSCI	CCNGG	3 cut(s)	94, 134, 261
BstSFI	CTRYAG	1 cut(s)	950
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	205, 860
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	2 cut(s)	205, 860
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	113, 833
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	114, 124
BtsIMutI	CAGTG	1 cut(s)	802
BveI	ACCTGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	349, 775
CviAII	CATG	8 cut(s)	190, 272, 418, 602, 642, 685, 749, 902
CviJI	RGCY	9 cut(s)	113, 230, 285, 446, 497, 537, 545, 599, 833
CviKI_1	RGCY	9 cut(s)	113, 230, 285, 446, 497, 537, 545, 599, 833
CviQI	GTAC	2 cut(s)	349, 775
DdeI	CTNAG	5 cut(s)	730, 794, 871, 916, 958
DpnI	GATC	5 cut(s)	207, 390, 747, 813, 862
DpnII	GATC	5 cut(s)	205, 388, 745, 811, 860
DraIII	CACNNNGTG	1 cut(s)	874
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	114, 601
Eco147I	AGGCCT	1 cut(s)	833
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	890
EcoRII	CCWGG	2 cut(s)	94, 134
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	114, 601
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	114, 601
FaeI	CATG	8 cut(s)	193, 275, 421, 605, 645, 688, 752, 905
FatI	CATG	8 cut(s)	189, 271, 417, 601, 641, 684, 748, 901
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	121, 131
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	113, 833
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	8 cut(s)	193, 275, 421, 605, 645, 688, 752, 905
HinfI	GANTC	5 cut(s)	23, 58, 90, 401, 658
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	437, 749
Hpy166II	GTNNAC	3 cut(s)	41, 451, 777
Hpy188I	TCNGA	4 cut(s)	526, 822, 894, 919
Hpy188III	TCNNGA	4 cut(s)	55, 248, 363, 413
Hpy8I	GTNNAC	3 cut(s)	41, 451, 777
HpyAV	CCTTC	3 cut(s)	416, 730, 874
HpyCH4III	ACNGT	1 cut(s)	954
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	6 cut(s)	41, 294, 473, 575, 594, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 291
HpyF3I	CTNAG	5 cut(s)	730, 794, 871, 916, 958
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	8 cut(s)	193, 275, 421, 605, 645, 688, 752, 905
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	5 cut(s)	205, 388, 745, 811, 860
LmnI	GCTCC	2 cut(s)	79, 290
LpnPI	CCDG	8 cut(s)	21, 81, 108, 121, 148, 261, 276, 864
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	109, 303
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	4 cut(s)	175, 567, 755, 800
MalI	GATC	5 cut(s)	207, 390, 747, 813, 862
MboI	GATC	5 cut(s)	205, 388, 745, 811, 860
MboII	GAAGA	2 cut(s)	32, 145
MflI	RGATCY	2 cut(s)	205, 860
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	5 cut(s)	301, 308, 467, 527, 815
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	3 cut(s)	32, 84, 652
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	4, 10, 75, 346, 599, 711, 823
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	4 cut(s)	369, 561, 765, 836
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	3 cut(s)	96, 136, 263
MvaI	CCWGG	2 cut(s)	96, 136
MwoI	GCNNNNNNNGC	2 cut(s)	119, 291
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	5 cut(s)	205, 388, 745, 811, 860
NlaIII	CATG	8 cut(s)	193, 275, 421, 605, 645, 688, 752, 905
NlaIV	GGNNCC	1 cut(s)	862
NmuCI	GTSAC	3 cut(s)	175, 755, 800
NsiI	ATGCAT	1 cut(s)	296
PasI	CCCWGGG	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	833
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	58, 401
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	3 cut(s)	31, 84, 652
PpsI	GAGTC	3 cut(s)	31, 84, 652
Psp6I	CCWGG	2 cut(s)	94, 134
PspGI	CCWGG	2 cut(s)	94, 134
PspN4I	GGNNCC	1 cut(s)	862
PspPI	GGNCC	1 cut(s)	890
PsuI	RGATCY	2 cut(s)	205, 860
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	350, 776
RsaNI	GTAC	2 cut(s)	349, 775
SaqAI	TTAA	4 cut(s)	369, 561, 765, 836
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	5 cut(s)	205, 388, 745, 811, 860
Sau96I	GGNCC	1 cut(s)	890
SchI	GAGTC	3 cut(s)	32, 84, 652
ScrFI	CCNGG	3 cut(s)	96, 136, 263
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	8 cut(s)	232, 287, 427, 448, 482, 785, 853, 964
SfaNI	GCATC	2 cut(s)	109, 303
SfcI	CTRYAG	1 cut(s)	950
SinI	GGWCC	1 cut(s)	890
Sse9I	AATT	5 cut(s)	301, 308, 467, 527, 815
SseBI	AGGCCT	1 cut(s)	833
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	1 cut(s)	753
StuI	AGGCCT	1 cut(s)	833
StyD4I	CCNGG	3 cut(s)	94, 134, 261
StyI	CCWWGG	2 cut(s)	114, 601
TaaI	ACNGT	1 cut(s)	954
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	2 cut(s)	338, 924
TasI	AATT	5 cut(s)	301, 308, 467, 527, 815
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	2 cut(s)	58, 401
Tru1I	TTAA	4 cut(s)	369, 561, 765, 836
Tru9I	TTAA	4 cut(s)	369, 561, 765, 836
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	3 cut(s)	175, 755, 800
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	3 cut(s)	175, 755, 800
TspDTI	ATGAA	4 cut(s)	288, 410, 712, 959
TspRI	CASTG	1 cut(s)	802
Van91I	CCANNNNNTGG	1 cut(s)	626
VneI	GTGCAC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	890
XapI	RAATTY	2 cut(s)	467, 527
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	1 cut(s)	753
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.