Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Reverse (-)

49155057 .. 49158748

Gene Structure 3692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG204900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCAAGGATGCTGCTCAACCCACCAGGACTTCAACAAGGGTCTTCCAAGTATATGGTTGTGTTGTGACTTGTAAAGACGTGGTTGAACACAAAGATCCCAAAAAATCATTTGACAAAGTAGGTGCAGATGATGAGGTAGGTGCGGATGATGAGGAAGGTACGGAAGCAATTGAAGGACATTTTCCTTCAAATGGGGAACTTGACCATGATGTGGAAGAACTGGAGAAAATTGCTGTTGTCAATCTTCTTCAGCACCGATCAATAATATCTCTCATTGGAGATGTGCAGAAATCATCACTAATATTAGAGAAGGTGTTGTCCTGTGTTTTGCCAAGTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

114

Amino Acids

12.42

Weight (kDa)

4.68

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	163, 340
AfiI	CCNNNNNNNGG	2 cut(s)	194, 214
AgsI	TTSAA	4 cut(s)	36, 89, 176, 192
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	26
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	28
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 214
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	16, 154
BseLI	CCNNNNNNNGG	2 cut(s)	194, 214
BseNI	ACTGG	1 cut(s)	228
BsgI	GTGCAG	2 cut(s)	147, 308
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	194, 214
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	97, 260
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	97, 260
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	16, 154
BstKTI	GATC	2 cut(s)	100, 263
BstMBI	GATC	2 cut(s)	97, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	16, 154
Csp6I	GTAC	2 cut(s)	162, 339
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
CviQI	GTAC	2 cut(s)	162, 339
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	99, 262
DpnII	GATC	2 cut(s)	97, 260
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	212
FaiI	YATR	3 cut(s)	55, 57, 210
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	23, 161
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	152, 170, 198, 307
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	128, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	97, 260
LpnPI	CCDG	4 cut(s)	13, 40, 209, 337
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	99, 262
MboI	GATC	2 cut(s)	97, 260
MboII	GAAGA	4 cut(s)	37, 230, 239, 242
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	171, 231
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	130, 148
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	97, 260
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	163, 340
RsaNI	GTAC	2 cut(s)	162, 339
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	97, 260
ScaI	AGTACT	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	6 cut(s)	84, 127, 141, 145, 163, 318
Sse9I	AATT	2 cut(s)	171, 231
SsiI	CCGC	1 cut(s)	146
SspI	AATATT	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	6
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	171, 231
TatI	WGTACW	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.