Rroxscaffold_176G00431240

Alpha-aminoadipic semialdehyde

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
Physical Location & Seq
Reverse (-)
669742 .. 672313
2572 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_176G00431240.1

Sequence Viewer

Length: 510 bp
ATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAGGTTTTATTGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTTGGCTATTTGGCTTCTACAAAAGACATTAAAAAGTTACCTGCACACTTGATGAAAACTTGCATAGCCCATGAAGGAACACTTACCCCATTGTATGAATACATTTCTCGCATGCGAAAATGTGATGACTCCGAAGAAACATCAAAAGAACATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTAGGTGCAGATGATGAGGTAGGTGCGGATGATGAGGAAGGTACGGAAGCAATTGAAGGACATTTTCCTTCAAATGGGGTACTTACAACTTTTGAAGACTTGGGGATATGGGTGGATGTCCTTGCTACTAGTGAAGTCAGTATTTGCTTGAGGTTGGACCCATCAAAACTTTGGAGCAGATAG

Protein Analysis

169

Amino Acids

19.05

Weight (kDa)

4.77

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AciI CCGC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 74, 133
AfaI GTAC 3 cut(s) 317, 370, 408
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 3 cut(s) 383, 399, 422
AhlI ACTAGT 1 cut(s) 455
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 74, 133
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 44, 290
AvaII GGWCC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 429
BccI CCATC 3 cut(s) 24, 29, 496
BcoDI GTCTC 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 2 cut(s) 294, 456
BfuAI ACCTGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 1 cut(s) 401
BseGI GGATG 2 cut(s) 361, 448
BseLI CCNNNNNNNGG 1 cut(s) 401
BsgI GTGCAG 2 cut(s) 165, 354
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 113
BspACI CCGC 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 251
BstF5I GGATG 2 cut(s) 361, 448
BstMAI GTCTC 1 cut(s) 113
BstNSI RCATGY 2 cut(s) 253, 293
BstV2I GAAGAC 1 cut(s) 429
BtsCI GGATG 2 cut(s) 361, 448
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 484
Csp6I GTAC 3 cut(s) 316, 369, 407
CviAII CATG 4 cut(s) 25, 209, 250, 290
CviJI RGCY 5 cut(s) 53, 103, 144, 152, 206
CviKI_1 RGCY 5 cut(s) 53, 103, 144, 152, 206
CviQI GTAC 3 cut(s) 316, 369, 407
Eco47I GGWCC 1 cut(s) 484
FaeI CATG 4 cut(s) 28, 212, 253, 293
FaiI YATR 9 cut(s) 26, 46, 124, 203, 210, 234, 251, 291, 436
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 4 cut(s) 24, 208, 249, 289
FokI GGATG 2 cut(s) 368, 455
FspBI CTAG 2 cut(s) 294, 456
Hin1II CATG 4 cut(s) 28, 212, 253, 293
HinfI GANTC 2 cut(s) 8, 266
HphI GGTGA 2 cut(s) 44, 290
Hpy166II GTNNAC 2 cut(s) 58, 318
Hpy188I TCNGA 2 cut(s) 132, 271
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 58, 318
HpyAV CCTTC 5 cut(s) 23, 206, 359, 377, 405
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 4 cut(s) 80, 182, 201, 335
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 4 cut(s) 28, 212, 253, 293
LmnI GCTCC 1 cut(s) 501
LpnPI CCDG 1 cut(s) 192
MaeI CTAG 2 cut(s) 294, 456
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 174, 296
MboII GAAGA 2 cut(s) 284, 434
MfeI CAATTG 1 cut(s) 378
MluCI AATT 3 cut(s) 74, 133, 378
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 2 cut(s) 92, 462
MnlI CCTC 3 cut(s) 337, 355, 471
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 2 cut(s) 168, 306
MspA1I CMGCKG 1 cut(s) 53
MunI CAATTG 1 cut(s) 378
NlaIII CATG 4 cut(s) 28, 212, 253, 293
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 2 cut(s) 253, 293
PaeI GCATGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 3 cut(s) 317, 370, 408
RsaNI GTAC 3 cut(s) 316, 369, 407
SaqAI TTAA 2 cut(s) 168, 306
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 1 cut(s) 260
SinI GGWCC 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SpeI ACTAGT 1 cut(s) 455
SphI GCATGC 1 cut(s) 253
Sse9I AATT 3 cut(s) 74, 133, 378
SsiI CCGC 1 cut(s) 353
SspMI CTAG 2 cut(s) 294, 456
TaiI ACGT 1 cut(s) 326
TasI AATT 3 cut(s) 74, 133, 378
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 168, 306
Tru9I TTAA 2 cut(s) 168, 306
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 17, 206, 225, 249
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 2 cut(s) 74, 133
XceI RCATGY 2 cut(s) 253, 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 294, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.