Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

33074436 .. 33083786

Gene Structure 9351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG150200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGGGAGAGGAAGAGTCTGTTTTTTCTGGTGCACAAGAGATATTCAAGCTTCTCCCTCATACTTCTGTGGAGCCAAGCAGACTCCCAGGGATATTTGGGATGGGGATCAATAGAGTTTGTTAATCAAACCACCCAAATTGACTCACCTTTCTTCAGATATGATCCAATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATTGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTACAAAAGGCATTAAAAAGTTACTTGCACACTTGATGAAAACTTGCATAGCCCATGGAGGAACACTTACCCCATTGTATGACTCAGAAGAAACATCAAAAGATCATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTATCTCTCAGTGGTCACTTGTTTGATCAATTTTTGATAAATGAGGCCTTAAATATTATTGAACCTGCAAGTGGATCCTTCCTCTTAGTGAAGTGTCAAGTTGGTCCGAGTTCTCATGCTTTGTCATACTCAGAACTCGAAGTAGGTGCAGATGATGAGGTAGGTGCGGATGATGAGGAAGATATATCTGAGGTACGGAAGCAATTGAAGGACATTTTCCTTCAAATGGGGTTTGGAGAGATGCCCACTAATAACTATGTCGAGAGCAGGTACTTACAACTTTTGAAGACTTGGGGATATGGGTGGATGTCTTTGCTACTAGTGAAGACCAATCGGGTCTGCAATGTTTTCGAATATGGTTGCTTGGAAGAGATTGGATTGGTTTGCAATCTGGGGGTGACATCTCTTCCACATTGGGAATATTGCAATTATAGTCTAAAGATTTGGTGGCTAGGTGACCTTGGAGCTCTTCGAACTGGAATACCCATAGGAAAATGTGATATATATGTTGCTGCAGCTGAAATTAATTCACACTCTCTGTGCTGCAAGGTGACCTTGGAGTTCTTGGAACTGGAATACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

349

Amino Acids

39.53

Weight (kDa)

5.3

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saccharop_dh_N	PF04455	155 - 208	7.2e-12	LOR/SDH bifunctional enzyme conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	538, 723
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	4 cut(s)	115, 158, 534, 547
AcsI	RAATTY	2 cut(s)	242, 302
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	3 cut(s)	455, 660, 737
AfiI	CCNNNNNNNGG	2 cut(s)	536, 691
AgsI	TTSAA	5 cut(s)	48, 527, 673, 689, 751
AhlI	ACTAGT	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AluBI	AGCT	4 cut(s)	51, 221, 932, 983
AluI	AGCT	4 cut(s)	51, 221, 932, 983
Alw21I	GWGCWC	2 cut(s)	36, 934
Alw26I	GTCTC	1 cut(s)	282
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	115, 158, 534, 547
AoxI	GGCC	1 cut(s)	510
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	977, 980, 1008
ApoI	RAATTY	2 cut(s)	242, 302
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	6 cut(s)	138, 212, 428, 874, 932, 1027
AsuII	TTCGAA	2 cut(s)	816, 937
AvaII	GGWCC	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	450, 483
BamHI	GGATCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	934
BbsI	GAAGAC	2 cut(s)	758, 797
Bbv12I	GWGCWC	2 cut(s)	36, 934
BbvI	GCAGC	3 cut(s)	964, 992, 995
BccI	CCATC	3 cut(s)	96, 192, 197
BcgI	CGANNNNNNTGC	4 cut(s)	593, 627, 796, 830
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	282
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	3 cut(s)	432, 785, 917
BfmI	CTRYAG	1 cut(s)	978
BfuAI	ACCTGC	2 cut(s)	538, 723
BisI	GCNGC	3 cut(s)	978, 981, 1009
BlsI	GCNGC	3 cut(s)	979, 982, 1010
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	74, 541
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	758, 797
Bpu14I	TTCGAA	2 cut(s)	816, 937
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	5 cut(s)	87, 88, 376, 925, 1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 691
Bse1I	ACTGG	2 cut(s)	946, 1041
Bse3DI	GCAATG	1 cut(s)	814
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	5 cut(s)	87, 88, 376, 925, 1020
BseGI	GGATG	3 cut(s)	107, 640, 777
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	536, 691
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	4 cut(s)	420, 487, 609, 645
BseNI	ACTGG	2 cut(s)	946, 1041
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	3 cut(s)	964, 992, 995
BsgI	GTGCAG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	512
BsiHKAI	GWGCWC	2 cut(s)	36, 934
BslI	CCNNNNNNNGG	2 cut(s)	536, 691
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	512
Bsp119I	TTCGAA	2 cut(s)	816, 937
Bsp1286I	GDGCHC	2 cut(s)	36, 934
Bsp143I	GATC	5 cut(s)	107, 163, 424, 490, 539
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	4 cut(s)	419, 486, 608, 646
BspLI	GGNNCC	2 cut(s)	74, 541
BspMAI	CTGCAG	1 cut(s)	982
BspMI	ACCTGC	2 cut(s)	538, 723
BspPI	GGATC	4 cut(s)	115, 158, 534, 547
BspQI	GCTCTTC	1 cut(s)	939
BspT104I	TTCGAA	2 cut(s)	816, 937
BsrDI	GCAATG	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	946, 1041
BssECI	CCNNGG	5 cut(s)	87, 88, 376, 925, 1020
BssMI	GATC	5 cut(s)	107, 163, 424, 490, 539
BssT1I	CCWWGG	3 cut(s)	376, 925, 1020
Bst2UI	CCWGG	1 cut(s)	89
Bst6I	CTCTTC	4 cut(s)	8, 828, 876, 939
BstBI	TTCGAA	2 cut(s)	816, 937
BstDEI	CTNAG	5 cut(s)	406, 473, 550, 595, 654
BstDSI	CCRYGG	1 cut(s)	376
BstEII	GGTNACC	2 cut(s)	920, 1015
BstF5I	GGATG	3 cut(s)	107, 640, 777
BstKTI	GATC	5 cut(s)	110, 166, 427, 493, 542
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	5 cut(s)	107, 163, 424, 490, 539
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	2 cut(s)	920, 1015
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	964, 992, 995
BstV2I	GAAGAC	2 cut(s)	758, 797
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	512
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	107, 640, 777
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	2 cut(s)	538, 723
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	454, 659, 736
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	4 cut(s)	193, 377, 428, 581
CviQI	GTAC	3 cut(s)	454, 659, 736
DdeI	CTNAG	5 cut(s)	406, 473, 550, 595, 654
DpnI	GATC	5 cut(s)	109, 165, 426, 492, 541
DpnII	GATC	5 cut(s)	107, 163, 424, 490, 539
Eam1104I	CTCTTC	4 cut(s)	8, 828, 876, 939
EarI	CTCTTC	4 cut(s)	8, 828, 876, 939
Ecl136II	GAGCTC	1 cut(s)	932
Eco130I	CCWWGG	3 cut(s)	376, 925, 1020
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	569
Eco53kI	GAGCTC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	139
Eco91I	GGTNACC	2 cut(s)	920, 1015
EcoICRI	GAGCTC	1 cut(s)	932
EcoO65I	GGTNACC	2 cut(s)	920, 1015
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	3 cut(s)	376, 925, 1020
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	3 cut(s)	376, 925, 1020
FaeI	CATG	4 cut(s)	196, 380, 431, 584
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FatI	CATG	4 cut(s)	192, 376, 427, 580
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	978, 981, 1009
FokI	GGATG	3 cut(s)	114, 647, 784
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	3 cut(s)	978, 981, 1009
FspBI	CTAG	3 cut(s)	432, 785, 917
GluI	GCNGC	3 cut(s)	978, 981, 1009
HaeIII	GGCC	1 cut(s)	512
Hin1II	CATG	4 cut(s)	196, 380, 431, 584
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	5 cut(s)	16, 83, 143, 176, 404
HphI	GGTGA	6 cut(s)	138, 212, 428, 874, 932, 1027
Hpy166II	GTNNAC	3 cut(s)	34, 226, 456
Hpy188I	TCNGA	6 cut(s)	158, 301, 409, 573, 598, 655
Hpy188III	TCNNGA	2 cut(s)	188, 727
Hpy8I	GTNNAC	3 cut(s)	34, 226, 456
HpyAV	CCTTC	4 cut(s)	191, 553, 667, 695
HpyCH4IV	ACGT	1 cut(s)	461
HpyF3I	CTNAG	5 cut(s)	406, 473, 550, 595, 654
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	196, 380, 431, 584
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	107, 163, 424, 490, 539
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	2 cut(s)	72, 929
LpnPI	CCDG	8 cut(s)	14, 74, 101, 543, 718, 842, 927, 1022
Lsp1109I	GCAGC	3 cut(s)	964, 992, 995
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	3 cut(s)	432, 785, 917
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	6 cut(s)	342, 434, 479, 862, 920, 1015
MalI	GATC	5 cut(s)	109, 165, 426, 492, 541
MboI	GATC	5 cut(s)	107, 163, 424, 490, 539
MboII	GAAGA	9 cut(s)	25, 145, 422, 656, 763, 802, 845, 863, 926
MfeI	CAATTG	1 cut(s)	668
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	36, 934
MluCI	AATT	8 cut(s)	138, 242, 302, 494, 668, 892, 987, 991
MlyI	GAGTC	4 cut(s)	25, 77, 137, 398
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	8 cut(s)	3, 68, 374, 502, 557, 616, 634, 649
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	5 cut(s)	123, 336, 444, 515, 990
MspA1I	CMGCKG	2 cut(s)	221, 983
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	5 cut(s)	107, 163, 424, 490, 539
NlaIII	CATG	4 cut(s)	196, 380, 431, 584
NlaIV	GGNNCC	2 cut(s)	74, 541
NmuCI	GTSAC	5 cut(s)	434, 479, 862, 920, 1015
NspV	TTCGAA	2 cut(s)	816, 937
PasI	CCCWGGG	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	939
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	979, 982, 1010
PleI	GAGTC	4 cut(s)	24, 77, 137, 398
PpsI	GAGTC	4 cut(s)	24, 77, 137, 398
PshBI	ATTAAT	1 cut(s)	990
Psp124BI	GAGCTC	1 cut(s)	934
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	2 cut(s)	920, 1015
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	74, 541
PspPI	GGNCC	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	982
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	2 cut(s)	221, 983
RsaI	GTAC	3 cut(s)	455, 660, 737
RsaNI	GTAC	3 cut(s)	454, 659, 736
SacI	GAGCTC	1 cut(s)	934
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	5 cut(s)	123, 336, 444, 515, 990
SatI	GCNGC	3 cut(s)	978, 981, 1009
Sau3AI	GATC	5 cut(s)	107, 163, 424, 490, 539
Sau96I	GGNCC	1 cut(s)	569
SchI	GAGTC	4 cut(s)	25, 77, 137, 398
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	36, 934
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	1 cut(s)	978
SfuI	TTCGAA	2 cut(s)	816, 937
SinI	GGWCC	1 cut(s)	569
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	8 cut(s)	138, 242, 302, 494, 668, 892, 987, 991
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	1 cut(s)	632
SspI	AATATT	2 cut(s)	520, 887
SspMI	CTAG	3 cut(s)	432, 785, 917
SstI	GAGCTC	1 cut(s)	934
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	3 cut(s)	376, 925, 1020
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	4 cut(s)	603, 726, 816, 937
TasI	AATT	8 cut(s)	138, 242, 302, 494, 668, 892, 987, 991
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	5 cut(s)	123, 336, 444, 515, 990
Tru9I	TTAA	5 cut(s)	123, 336, 444, 515, 990
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	5 cut(s)	434, 479, 862, 920, 1015
TseI	GCWGC	3 cut(s)	977, 980, 1008
Tsp45I	GTSAC	5 cut(s)	434, 479, 862, 920, 1015
TspDTI	ATGAA	2 cut(s)	185, 374
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	481
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	569
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	2 cut(s)	242, 302
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	3 cut(s)	432, 785, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.