Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001454

Physical Location & Seq

Genomic Coordinates Forward (+)

36216920 .. 36218859

Gene Structure 1940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAGATTCTTACCATCAAGACATGGAAGGTGATGGTGTGGTATGTTCAGCTGTGGACATTTTTCCAACAGAATTTGCAAAAAGGTTTTATTGTGGAAAGGCTTCCAAACACTTTGGAGACATATTATCAGAATTTTTTGGCTATTTGGCTTCTACAAAAGACATTAAAAAGTTACCTGCACAGTTGATGAAAACTTGCATAGCCCATGAAGGAACACTTACCCCATTGTATGAATACATTTCTCACATGCGAAAATGTGATGACTCAGAAGAAACATCAAAAGAACATGCTAGTCACCACTTTAACAAGAAGTACACCACGTTAGTATCTCTCAGTGGTCACTTGTTTGATCAATTTCTAATAAATGAGGCCTTAAATATTATTGAACCTGCAAGTGGATCCTTCCACTTAGTGAAGTGTCAAGTTGGTCCGAGTTCTCATGCTATGTCATACTCAGAACTCGAAGTAGGTGCAGATGATGAGGTAGGTGCAGATGATGAGGAAGGTATTCCAAATGCAATTCCAGTTCAACTTGATGTGTCAGACACTAGTACTCTTCATAAGTATATATCTGAGGTACGGAAGCAATTGAAGGACATTTTCCTTCAAATGGGGTTTGGAGAGATGCCCACTAATAACTATGTCGAGAGCAGGTGGGTCTATCTGGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004753 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009987 GO:0016053 GO:0016491 GO:0016645 GO:0016646 GO:0019752 GO:0019878 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko00310 ko01100 ko01110 ko01130 ko01230 map00300 map00310 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

AlaDh_PNT_N Saccharop_dh_N Sacchrp_dh_C Sacchrp_dh_NADP

Protein Analysis

225

Amino Acids

25.34

Weight (kDa)

5.13

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saccharop_dh_N	PF04455	109 - 162	2.9e-13	LOR/SDH bifunctional enzyme conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33150 AT4G33150 AT4G33150 AT4G33150
fragaria_vesca	FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640 FvH4_1g09640
malus_domestica	MD02G1105000.v1.1 MD02G1105300.v1.1
prunus_persica	Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1 Prupe.7G189800_v2.0.a1
pyrus_communis	pycom02g08340
rosa_chinensis	RchiOBHm_Chr2g0096481 RchiOBHm_Chr2g0121231 RchiOBHm_Chr2g0121241 RchiOBHm_Chr2g0169881 RchiOBHm_Chr2g0169891
rosa_laevigata	RLG00000016643
rosa_multiflora	Rmu_sc0004096.1_g000015 Rmu_sc0018708.1_g000006
rosa_roxburghii	Rroxscaffold_176G00431240 Rroxscaffold_2G00145610 Rroxscaffold_7G00171930
rosa_rugosa	Rorug02G0058100
rosa_samantha	Rh1AG160500 Rh1AG160600 Rh1CG150200 Rh2AG105000 Rh2AG293500 Rh2AG293600 Rh2BG107100 Rh2CG108900 Rh2CG232200 Rh2DG108100 Rh2DG317400 Rh2DG317500 Rh3AG001100 Rh3BG000800 Rh3CG000800 Rh3DG001000 Rh4AG204900 Rh7AG127200
rosa_wichuraiana	Rw2G008110 Rw2G016820 Rw6G021060 Rw6G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	645
Acc36I	ACCTGC	3 cut(s)	187, 400, 645
AclWI	GGATC	2 cut(s)	396, 409
AcsI	RAATTY	2 cut(s)	74, 134
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	3 cut(s)	317, 556, 582
AfiI	CCNNNNNNNGG	2 cut(s)	398, 613
AgsI	TTSAA	4 cut(s)	389, 533, 595, 611
AhlI	ACTAGT	1 cut(s)	551
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	396, 409
AoxI	GGCC	1 cut(s)	372
ApoI	RAATTY	2 cut(s)	74, 134
Asp700I	GAANNNNTTC	2 cut(s)	103, 510
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	44, 290
AvaII	GGWCC	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BamHI	GGATCC	1 cut(s)	401
BccI	CCATC	2 cut(s)	24, 29
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	2 cut(s)	294, 552
BfuAI	ACCTGC	3 cut(s)	187, 400, 645
BmcAI	AGTACT	1 cut(s)	556
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	403
BmsI	GCATC	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 613
Bse1I	ACTGG	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	398, 613
BseMII	CTCAG	4 cut(s)	282, 349, 471, 567
BseNI	ACTGG	1 cut(s)	527
BsgI	GTGCAG	3 cut(s)	165, 495, 513
BshFI	GGCC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	398, 613
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	352, 401
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	4 cut(s)	281, 348, 470, 568
BspLI	GGNNCC	1 cut(s)	403
BspMI	ACCTGC	3 cut(s)	187, 400, 645
BspPI	GGATC	2 cut(s)	396, 409
BsrI	ACTGG	1 cut(s)	527
BssMI	GATC	2 cut(s)	352, 401
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	564
BstDEI	CTNAG	5 cut(s)	268, 335, 412, 457, 576
BstKTI	GATC	2 cut(s)	355, 404
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	352, 401
BstNSI	RCATGY	2 cut(s)	253, 293
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	3 cut(s)	187, 400, 645
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	316, 555, 581
CviAII	CATG	5 cut(s)	25, 209, 250, 290, 443
CviJI	RGCY	6 cut(s)	53, 104, 144, 152, 206, 374
CviKI_1	RGCY	6 cut(s)	53, 104, 144, 152, 206, 374
CviQI	GTAC	3 cut(s)	316, 555, 581
DdeI	CTNAG	5 cut(s)	268, 335, 412, 457, 576
DpnI	GATC	2 cut(s)	354, 403
DpnII	GATC	2 cut(s)	352, 401
DraIII	CACNNNGTG	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	431
FaeI	CATG	5 cut(s)	28, 212, 253, 293, 446
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	5 cut(s)	24, 208, 249, 289, 442
FbaI	TGATCA	1 cut(s)	352
FspBI	CTAG	2 cut(s)	294, 552
HaeIII	GGCC	1 cut(s)	374
Hin1II	CATG	5 cut(s)	28, 212, 253, 293, 446
HinfI	GANTC	2 cut(s)	8, 266
HphI	GGTGA	2 cut(s)	44, 290
Hpy166II	GTNNAC	2 cut(s)	58, 318
Hpy188I	TCNGA	6 cut(s)	133, 271, 435, 460, 547, 577
Hpy188III	TCNNGA	2 cut(s)	20, 649
Hpy8I	GTNNAC	2 cut(s)	58, 318
HpyAV	CCTTC	6 cut(s)	23, 206, 415, 500, 589, 617
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	7 cut(s)	80, 182, 201, 395, 476, 494, 521
HpyF3I	CTNAG	5 cut(s)	268, 335, 412, 457, 576
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	5 cut(s)	28, 212, 253, 293, 446
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	352, 401
LpnPI	CCDG	5 cut(s)	192, 405, 540, 640, 653
LweI	GCATC	1 cut(s)	618
MaeI	CTAG	2 cut(s)	294, 552
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	174, 296, 341
MalI	GATC	2 cut(s)	354, 403
MboI	GATC	2 cut(s)	352, 401
MboII	GAAGA	2 cut(s)	284, 551
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	5 cut(s)	74, 134, 356, 522, 590
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	364, 478, 496, 571
MroXI	GAANNNNTTC	2 cut(s)	103, 510
MseI	TTAA	3 cut(s)	168, 306, 377
MspA1I	CMGCKG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	590
NdeII	GATC	2 cut(s)	352, 401
NlaIII	CATG	5 cut(s)	28, 212, 253, 293, 446
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	296, 341
NspI	RCATGY	2 cut(s)	253, 293
PaqCI	CACCTGC	1 cut(s)	645
PceI	AGGCCT	1 cut(s)	374
PdmI	GAANNNNTTC	2 cut(s)	103, 510
PfeI	GAWTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	317, 556, 582
RsaNI	GTAC	3 cut(s)	316, 555, 581
SaqAI	TTAA	3 cut(s)	168, 306, 377
Sau3AI	GATC	2 cut(s)	352, 401
Sau96I	GGNCC	1 cut(s)	431
ScaI	AGTACT	1 cut(s)	556
SchI	GAGTC	1 cut(s)	260
SfaNI	GCATC	1 cut(s)	618
SinI	GGWCC	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	5 cut(s)	74, 134, 356, 522, 590
SseBI	AGGCCT	1 cut(s)	374
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	2 cut(s)	294, 552
StuI	AGGCCT	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	465, 648
TasI	AATT	5 cut(s)	74, 134, 356, 522, 590
TatI	WGTACW	2 cut(s)	315, 554
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	168, 306, 377
Tru9I	TTAA	3 cut(s)	168, 306, 377
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	296, 341
Tsp45I	GTSAC	2 cut(s)	296, 341
TspDTI	ATGAA	5 cut(s)	17, 206, 225, 249, 551
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	2 cut(s)	74, 134
XceI	RCATGY	2 cut(s)	253, 293
XmnI	GAANNNNTTC	2 cut(s)	103, 510
XspI	CTAG	2 cut(s)	294, 552
ZrmI	AGTACT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.