Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002394

Physical Location & Seq

Genomic Coordinates Forward (+)

2112019 .. 2113387

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1025800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCACAAGGAACAAACGATATTAAGGGGACCACTAGATCACTTCATAAAAGGTTCAGTAAACTAAAATTATCTGGGAAAACCAGTTTGAGAAAAGGTGGTTCAAGTTTATCAGAGCAGGAGCCGAAGCATAACAATATTGTGTCCAGCATGACTTCTTTCATTCCACTTGTTCAACAGAAACACGCAGCTGCAGTTGTAACAGGGAAGAGGGACGTCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTGCAAAGCGTCAGGCAGAAAAGAAAGAGAATGAACGCAAGATGAAGAAGGAAGCCTTGAAACTTGAGCGGTCAAGAATGGAGCAGGAGAATATGAAGCAGTTGGAGTTGCAGAAGAAAAGGAAAGAAGAAGAGAGGAAGAAAAAAGAGGCAGATATGGCATCAAATAAGAGACAAAGGGAAGAGGAAGAAAGGAAGGAGAAGGAAAGAAAAAGAATGCGTATTGAAGCACGTAGAAACAAGAGAGAACATGAAGACAAGTTACCTGCAGAAAAGGATGGAAGAGGCCCTGGGGGTAAGGAATCTAAGGATGAAATGGCAAATAAGAAAATGGAGGAAGAAAGGGGATATGACAATAACATAAATATTTCGGAGACTAAGCCTAGTACTTCCAGGATTTCAATAAGCAATGCTGGAAAAGAAAGTATTGTCCACGAAGAGTTCCACGAGGCTTCTAGTAATTATGGATATAAAGCAGAGGTAAATGCAAATGATTTTTTAACAACCAATACCCACCATATCTTAGGATCTACTTGCATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

INCENP_ARK-bind

Protein Analysis

264

Amino Acids

30.22

Weight (kDa)

9.69

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820
fragaria_vesca	FvH4_7g06090 FvH4_7g06090
malus_domestica	MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1
prunus_persica	Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1
pyrus_communis	pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330
rosa_chinensis	RchiOBHm_Chr1g0333641
rosa_laevigata	RLG00000029543
rosa_multiflora	Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317360
rosa_rugosa	Rorug01G0110700 Rorug01G0110800
rosa_samantha	Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500
rosa_wichuraiana	Rw0G003340 Rw1G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	520
AccBSI	CCGCTC	1 cut(s)	316
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	781
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	634
AgsI	TTSAA	5 cut(s)	105, 176, 307, 473, 648
AjnI	CCWGG	3 cut(s)	231, 535, 638
AluBI	AGCT	3 cut(s)	191, 242, 248
AluI	AGCT	3 cut(s)	191, 242, 248
Alw26I	GTCTC	2 cut(s)	412, 614
AlwI	GGATC	1 cut(s)	781
AoxI	GGCC	2 cut(s)	228, 532
ApeKI	GCWGC	4 cut(s)	188, 191, 239, 248
AspS9I	GGNCC	3 cut(s)	30, 229, 533
AvaII	GGWCC	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BauI	CACGAG	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	178, 200, 235, 251
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	3 cut(s)	233, 537, 640
BcoDI	GTCTC	2 cut(s)	412, 614
BfaI	CTAG	3 cut(s)	36, 630, 702
BfmI	CTRYAG	2 cut(s)	192, 513
BfuAI	ACCTGC	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	4 cut(s)	189, 192, 240, 249
BlsI	GCNGC	4 cut(s)	190, 193, 241, 250
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	3 cut(s)	233, 537, 640
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	3 cut(s)	30, 229, 533
BmiI	GGNNCC	2 cut(s)	31, 123
BmrFI	CCNGG	3 cut(s)	233, 537, 640
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	231, 535, 536
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	3 cut(s)	233, 537, 640
BseDI	CCNNGG	3 cut(s)	231, 535, 536
BseGI	GGATG	2 cut(s)	529, 562
BseMI	GCAATG	1 cut(s)	661
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	178, 200, 235, 251
BshFI	GGCC	2 cut(s)	230, 534
BslFI	GGGAC	2 cut(s)	43, 227
BsmAI	GTCTC	2 cut(s)	412, 614
BsmFI	GGGAC	2 cut(s)	43, 227
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	230, 534
Bsp143I	GATC	2 cut(s)	38, 773
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	2 cut(s)	230, 534
BspLI	GGNNCC	2 cut(s)	31, 123
BspMAI	CTGCAG	2 cut(s)	196, 517
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	1 cut(s)	781
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	231, 535, 536
BssMI	GATC	2 cut(s)	38, 773
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	692
Bst2BI	CACGAG	1 cut(s)	692
Bst2UI	CCWGG	3 cut(s)	233, 537, 640
Bst6I	CTCTTC	5 cut(s)	203, 372, 423, 523, 678
BstACI	GRCGYC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	552, 624, 769
BstF5I	GGATG	2 cut(s)	529, 562
BstKTI	GATC	2 cut(s)	41, 776
BstMAI	GTCTC	2 cut(s)	412, 614
BstMBI	GATC	2 cut(s)	38, 773
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 245, 248, 404
BstNI	CCWGG	3 cut(s)	233, 537, 640
BstSCI	CCNGG	3 cut(s)	231, 535, 638
BstSFI	CTRYAG	2 cut(s)	192, 513
BstV1I	GCAGC	4 cut(s)	178, 200, 235, 251
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	230, 534
BtsCI	GGATG	2 cut(s)	529, 562
BveI	ACCTGC	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	30, 229, 533
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	2 cut(s)	151, 497
CviJI	RGCY	9 cut(s)	124, 191, 230, 242, 248, 302, 534, 628, 698
CviKI_1	RGCY	9 cut(s)	124, 191, 230, 242, 248, 302, 534, 628, 698
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	3 cut(s)	552, 624, 769
DpnI	GATC	2 cut(s)	40, 775
DpnII	GATC	2 cut(s)	38, 773
Eam1104I	CTCTTC	5 cut(s)	203, 372, 423, 523, 678
EarI	CTCTTC	5 cut(s)	203, 372, 423, 523, 678
Eco47I	GGWCC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	264
EcoO109I	RGGNCCY	2 cut(s)	229, 533
EcoRII	CCWGG	3 cut(s)	231, 535, 638
FaeI	CATG	2 cut(s)	154, 500
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	43, 227
FatI	CATG	2 cut(s)	150, 496
Fnu4HI	GCNGC	4 cut(s)	189, 192, 240, 249
FokI	GGATG	2 cut(s)	536, 569
Fsp4HI	GCNGC	4 cut(s)	189, 192, 240, 249
FspBI	CTAG	3 cut(s)	36, 630, 702
GluI	GCNGC	4 cut(s)	189, 192, 240, 249
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	230, 534
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	154, 500
HinfI	GANTC	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	62, 679
Hpy188I	TCNGA	2 cut(s)	115, 619
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	2 cut(s)	62, 679
HpyAV	CCTTC	4 cut(s)	220, 289, 436, 442
HpyCH4IV	ACGT	2 cut(s)	216, 478
HpyCH4V	TGCA	6 cut(s)	194, 251, 358, 515, 734, 783
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 245, 248, 404
HpyF3I	CTNAG	3 cut(s)	552, 624, 769
HpySE526I	ACGT	2 cut(s)	216, 478
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	154, 500
Kzo9I	GATC	2 cut(s)	38, 773
LmnI	GCTCC	2 cut(s)	121, 328
Lsp1109I	GCAGC	4 cut(s)	178, 200, 235, 251
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	3 cut(s)	36, 630, 702
MaeII	ACGT	2 cut(s)	216, 478
MaeIII	GTNAC	3 cut(s)	3, 199, 507
MalI	GATC	2 cut(s)	40, 775
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	2 cut(s)	38, 773
MflI	RGATCY	1 cut(s)	773
MluCI	AATT	2 cut(s)	68, 706
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	204, 229, 375, 388, 424, 524, 574, 688, 718
MseI	TTAA	2 cut(s)	24, 746
MspA1I	CMGCKG	2 cut(s)	191, 242
MspR9I	CCNGG	3 cut(s)	233, 537, 640
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	3 cut(s)	233, 537, 640
MwoI	GCNNNNNNNGC	4 cut(s)	236, 245, 248, 404
NdeII	GATC	2 cut(s)	38, 773
NlaIII	CATG	2 cut(s)	154, 500
NlaIV	GGNNCC	2 cut(s)	31, 123
NmuCI	GTSAC	1 cut(s)	3
PasI	CCCWGGG	1 cut(s)	536
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	638
PkrI	GCNGC	4 cut(s)	190, 193, 241, 250
Ppu21I	YACGTR	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	231, 535, 638
PspGI	CCWGG	3 cut(s)	231, 535, 638
PspN4I	GGNNCC	2 cut(s)	31, 123
PspPI	GGNCC	3 cut(s)	30, 229, 533
PstI	CTGCAG	2 cut(s)	196, 517
PsuI	RGATCY	1 cut(s)	773
PvuII	CAGCTG	2 cut(s)	191, 242
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	24, 746
SatI	GCNGC	4 cut(s)	189, 192, 240, 249
Sau3AI	GATC	2 cut(s)	38, 773
Sau96I	GGNCC	3 cut(s)	30, 229, 533
ScaI	AGTACT	1 cut(s)	634
ScrFI	CCNGG	3 cut(s)	233, 537, 640
SetI	ASST	9 cut(s)	56, 100, 193, 219, 244, 250, 481, 514, 729
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	2 cut(s)	192, 513
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	68, 706
SsiI	CCGC	1 cut(s)	316
SspI	AATATT	2 cut(s)	139, 613
SspMI	CTAG	3 cut(s)	36, 630, 702
StyD4I	CCNGG	3 cut(s)	231, 535, 638
TaiI	ACGT	2 cut(s)	219, 481
TasI	AATT	2 cut(s)	68, 706
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	24, 746
Tru9I	TTAA	2 cut(s)	24, 746
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	4 cut(s)	188, 191, 239, 248
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	7 cut(s)	35, 151, 294, 305, 356, 513, 573
VpaK11BI	GGWCC	1 cut(s)	30
XspI	CTAG	3 cut(s)	36, 630, 702
ZraI	GACGTC	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.