Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002394

Physical Location & Seq

Genomic Coordinates Forward (+)

2628717 .. 2632514

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1030200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGATCATAGTTGCTGAGGAAGTTGGCCAGGTGTTTTATGCAAGGTCCTATTCTGATTGCCTATTAAATCATAGTTGTCAATCTAGTTGGGATACTAAGAAACCTTATATGTCTCCAGTAGGGAAACTTTGGGATATAACTGGTTCAAGGACTAGCAGTTCAAGGAAGCGAGGAAGCTTAAATCCGGAGCTTCCCTGCATCAGTGAAGAAAATGAGAATGCAGATGAGGTAGCTGATATTTTCCAAGATGGCATTGTTTCAGATGCATTAAATAGCTCAATACAAAGAGTACCCCTTGCTGACATTACTGAGATTTCAAACCCTCCTGCATCAGTTTCTAAAGCTGAACCATATGCAGATAGACTTAGTCTAGATTCCGTGAACACTGAAATCAGCTTTACAGGCACTCATAAGAGCTTCAAACAGAGGCTTGGAATCCAAAACAGCAGCAAGAGAAGATATAACAATAAGGAGACAAACGATATTAAGAGGACCACTGGATCACTTCATAACATGTTCAGTAAACCAAAATTATCTGGAAAAACCAGTTTGAGAAAAGGTGGTCCAAGTTTGTCAGAGCAGGAGCCGAAACGTAACAATATCGTGTCCAGCATGACTTCTTTCATTCCACTTGTTCAACAGAAACAAGCAGCTGCAGTTATAACAGCTGAAGCTACAAAGCGTCTTGCAGAAAAGAAAGAGAATGAACGCAAGATGAAGAAGGAAGCCTTGAAACTTCACCGGTCAAGAATGGAGCAGGAGAATATGAAGCAGTTGGAGCTGCAGAAAAAAAAGAAAGAAGAAGAGAGGAAGAAAAAAGAAGCTGATATGGCATCAAAGAAGAGACAAAGGGAAGAGGAAGAAAGGAAGGAGAAGGAAAGAAAAAGAATGCGTGTTGAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAAAGTAGAGAATGAAATGAAAAGCCAGGCCATTGATGGAAGAGGCCCTGGCGGTAAGAAATCTAAGGATGAAACGCCACATAAGAAAATGGAGGCAGAAAGGGGATTTGACAATTCCAGAAATATTTCGGAGACTGAGCCTAGTACTTCCAGGATTTCAATAAGCAACGCTGGAAGAGAAAGTATTGTCCATGAAGAGTTCCATGAGGCCTGGAGTAATTATGGGTATAAAGCAGAGGTACCGAGCGATTTAGACAAAGAAATGGAGAATTCAATTGGCATTACAAGTCAAGAGCAGTCTTATGACATCTCTCCATACAAAGAATCAGATGATGAAAATGACGATGATGACAATATCATACCGAATAGTAAATTTATTCCTTCATGGTCAAGTAAAAAACTGCCTGGCTTTTGCTGTTTCTTGCCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

INCENP_ARK-bind

Protein Analysis

459

Amino Acids

52.25

Weight (kDa)

8.5

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820
fragaria_vesca	FvH4_7g06090 FvH4_7g06090
malus_domestica	MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1
prunus_persica	Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1
pyrus_communis	pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330
rosa_chinensis	RchiOBHm_Chr1g0333641
rosa_laevigata	RLG00000029543
rosa_multiflora	Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317360
rosa_rugosa	Rorug01G0110700 Rorug01G0110800
rosa_samantha	Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500
rosa_wichuraiana	Rw0G003340 Rw1G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	946
Acc65I	GGTACC	1 cut(s)	1183
AccB1I	GGYRCC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	907
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	996
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	1213, 1316
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	3 cut(s)	291, 1090, 1185
AflIII	ACRYGT	1 cut(s)	513
AgeI	ACCGGT	1 cut(s)	741
AgsI	TTSAA	9 cut(s)	147, 162, 318, 421, 638, 733, 899, 1104, 1218
AjnI	CCWGG	6 cut(s)	27, 969, 991, 1094, 1154, 1348
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
Alw26I	GTCTC	4 cut(s)	117, 467, 838, 1070
AlwI	GGATC	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	4 cut(s)	25, 972, 988, 1152
ApeKI	GCWGC	4 cut(s)	447, 650, 653, 781
ApoI	RAATTY	2 cut(s)	1213, 1316
AsiGI	ACCGGT	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	1069
Asp718I	GGTACC	1 cut(s)	1183
AspS9I	GGNCC	4 cut(s)	45, 492, 563, 989
AsuHPI	GGTGA	1 cut(s)	731
AvaII	GGWCC	3 cut(s)	45, 492, 563
BalI	TGGCCA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	1183
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	459, 640, 662, 768
BccI	CCATC	2 cut(s)	242, 974
BciT130I	CCWGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
BciVI	GTATCC	1 cut(s)	85
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	117, 467, 838, 1070
BfaI	CTAG	4 cut(s)	84, 153, 371, 1086
BfmI	CTRYAG	2 cut(s)	654, 782
BfuAI	ACCTGC	1 cut(s)	946
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	4 cut(s)	448, 651, 654, 782
BlsI	GCNGC	4 cut(s)	449, 652, 655, 783
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
Bme18I	GGWCC	3 cut(s)	45, 492, 563
BmgT120I	GGNCC	4 cut(s)	45, 492, 563, 989
BmiI	GGNNCC	2 cut(s)	585, 1185
BmrFI	CCNGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
BmsI	GCATC	4 cut(s)	207, 253, 338, 842
BpmI	CTGGAG	2 cut(s)	99, 1177
Bpu10I	CCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	991
BsaWI	WCCGGW	2 cut(s)	184, 741
Bse118I	RCCGGY	1 cut(s)	741
Bse1I	ACTGG	4 cut(s)	116, 145, 502, 546
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
BseDI	CCNNGG	1 cut(s)	991
BseGI	GGATG	1 cut(s)	1018
BseMII	CTCAG	3 cut(s)	6, 300, 1071
BseNI	ACTGG	4 cut(s)	116, 145, 502, 546
BseXI	GCAGC	4 cut(s)	459, 640, 662, 768
BshFI	GGCC	4 cut(s)	27, 974, 990, 1154
BshNI	GGYRCC	1 cut(s)	1183
BshTI	ACCGGT	1 cut(s)	741
BsiSI	CCGG	2 cut(s)	185, 742
BsmAI	GTCTC	4 cut(s)	117, 467, 838, 1070
BsmI	GAATGC	2 cut(s)	223, 894
BsnI	GGCC	4 cut(s)	27, 974, 990, 1154
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	3, 500
BspACI	CCGC	1 cut(s)	996
BspANI	GGCC	4 cut(s)	27, 974, 990, 1154
BspCNI	CTCAG	3 cut(s)	7, 301, 1072
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	585, 1185
BspMAI	CTGCAG	2 cut(s)	658, 786
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	1183
BsrFI	RCCGGY	1 cut(s)	741
BsrI	ACTGG	4 cut(s)	116, 145, 502, 546
BssAI	RCCGGY	1 cut(s)	741
BssECI	CCNNGG	1 cut(s)	991
BssMI	GATC	2 cut(s)	3, 500
Bst2UI	CCWGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
Bst6I	CTCTTC	6 cut(s)	798, 836, 849, 979, 1114, 1134
BstDEI	CTNAG	6 cut(s)	15, 96, 309, 365, 1008, 1080
BstF5I	GGATG	1 cut(s)	1018
BstKTI	GATC	2 cut(s)	6, 503
BstMAI	GTCTC	4 cut(s)	117, 467, 838, 1070
BstMBI	GATC	2 cut(s)	3, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	402, 778, 830
BstNI	CCWGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	6 cut(s)	27, 969, 991, 1094, 1154, 1348
BstSFI	CTRYAG	2 cut(s)	654, 782
BstV1I	GCAGC	4 cut(s)	459, 640, 662, 768
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	27, 974, 990, 1154
BtsCI	GGATG	1 cut(s)	1018
BtsIMutI	CAGTG	3 cut(s)	208, 384, 495
BveI	ACCTGC	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	741
Cfr13I	GGNCC	4 cut(s)	45, 492, 563, 989
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	290, 1089, 1184
CspAI	ACCGGT	1 cut(s)	741
CviAII	CATG	6 cut(s)	514, 613, 923, 1136, 1148, 1329
CviQI	GTAC	3 cut(s)	290, 1089, 1184
DdeI	CTNAG	6 cut(s)	15, 96, 309, 365, 1008, 1080
DpnI	GATC	2 cut(s)	5, 502
DpnII	GATC	2 cut(s)	3, 500
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	6 cut(s)	798, 836, 849, 979, 1114, 1134
EarI	CTCTTC	6 cut(s)	798, 836, 849, 979, 1114, 1134
Eco147I	AGGCCT	1 cut(s)	1154
Eco47I	GGWCC	3 cut(s)	45, 492, 563
Eco57I	CTGAAG	1 cut(s)	690
EcoO109I	RGGNCCY	2 cut(s)	45, 989
EcoRI	GAATTC	1 cut(s)	1213
EcoRII	CCWGG	6 cut(s)	27, 969, 991, 1094, 1154, 1348
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	6 cut(s)	517, 616, 926, 1139, 1151, 1332
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FatI	CATG	6 cut(s)	513, 612, 922, 1135, 1147, 1328
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	4 cut(s)	448, 651, 654, 782
FokI	GGATG	1 cut(s)	1025
Fsp4HI	GCNGC	4 cut(s)	448, 651, 654, 782
FspBI	CTAG	4 cut(s)	84, 153, 371, 1086
GluI	GCNGC	4 cut(s)	448, 651, 654, 782
GsuI	CTGGAG	2 cut(s)	99, 1177
HaeIII	GGCC	4 cut(s)	27, 974, 990, 1154
HapII	CCGG	2 cut(s)	185, 742
HgaI	GACGC	1 cut(s)	671
Hin1II	CATG	6 cut(s)	517, 616, 926, 1139, 1151, 1332
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	3 cut(s)	374, 435, 1268
HpaII	CCGG	2 cut(s)	185, 742
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	3 cut(s)	382, 524, 908
Hpy188I	TCNGA	5 cut(s)	55, 262, 577, 1075, 1273
Hpy188III	TCNNGA	6 cut(s)	185, 371, 537, 747, 1062, 1235
Hpy8I	GTNNAC	3 cut(s)	382, 524, 908
HpyAV	CCTTC	4 cut(s)	715, 862, 868, 1335
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	9 cut(s)	41, 198, 221, 266, 329, 356, 656, 689, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	402, 778, 830
HpyF3I	CTNAG	6 cut(s)	15, 96, 309, 365, 1008, 1080
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	6 cut(s)	517, 616, 926, 1139, 1151, 1332
Kpn2I	TCCGGA	1 cut(s)	184
KpnI	GGTACC	1 cut(s)	1187
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 500
LmnI	GCTCC	4 cut(s)	187, 583, 754, 778
Lsp1109I	GCAGC	4 cut(s)	459, 640, 662, 768
LweI	GCATC	4 cut(s)	207, 253, 338, 842
MaeI	CTAG	4 cut(s)	84, 153, 371, 1086
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	2 cut(s)	593, 933
MalI	GATC	2 cut(s)	5, 502
MboI	GATC	2 cut(s)	3, 500
MfeI	CAATTG	1 cut(s)	1218
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	6 cut(s)	530, 1057, 1162, 1213, 1218, 1316
MluNI	TGGCCA	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	756
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	268
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	1069
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	4 cut(s)	65, 179, 269, 486
Msp20I	TGGCCA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	653, 668
MspI	CCGG	2 cut(s)	185, 742
MspR9I	CCNGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
MunI	CAATTG	1 cut(s)	1218
Mva1269I	GAATGC	2 cut(s)	223, 894
MvaI	CCWGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
MwoI	GCNNNNNNNGC	3 cut(s)	402, 778, 830
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	2 cut(s)	3, 500
NlaIII	CATG	6 cut(s)	517, 616, 926, 1139, 1151, 1332
NlaIV	GGNNCC	2 cut(s)	585, 1185
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	1154
PciI	ACATGT	1 cut(s)	513
PctI	GAATGC	2 cut(s)	223, 894
PdmI	GAANNNNTTC	1 cut(s)	1069
PfeI	GAWTC	3 cut(s)	374, 435, 1268
PflFI	GACNNNGTC	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	1094
PinAI	ACCGGT	1 cut(s)	741
PkrI	GCNGC	4 cut(s)	449, 652, 655, 783
PpuMI	RGGWCCY	1 cut(s)	45
PscI	ACATGT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	662
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	6 cut(s)	27, 969, 991, 1094, 1154, 1348
PspGI	CCWGG	6 cut(s)	27, 969, 991, 1094, 1154, 1348
PspN4I	GGNNCC	2 cut(s)	585, 1185
PspPI	GGNCC	4 cut(s)	45, 492, 563, 989
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	2 cut(s)	658, 786
PsyI	GACNNNGTC	1 cut(s)	366
PvuII	CAGCTG	2 cut(s)	653, 668
RsaI	GTAC	3 cut(s)	291, 1090, 1185
RsaNI	GTAC	3 cut(s)	290, 1089, 1184
SaqAI	TTAA	4 cut(s)	65, 179, 269, 486
SatI	GCNGC	4 cut(s)	448, 651, 654, 782
Sau3AI	GATC	2 cut(s)	3, 500
Sau96I	GGNCC	4 cut(s)	45, 492, 563, 989
ScaI	AGTACT	1 cut(s)	1090
ScrFI	CCNGG	6 cut(s)	29, 971, 993, 1096, 1156, 1350
SfaNI	GCATC	4 cut(s)	207, 253, 338, 842
SfcI	CTRYAG	2 cut(s)	654, 782
SinI	GGWCC	3 cut(s)	45, 492, 563
Sse9I	AATT	6 cut(s)	530, 1057, 1162, 1213, 1218, 1316
SseBI	AGGCCT	1 cut(s)	1154
SsiI	CCGC	1 cut(s)	996
SspI	AATATT	1 cut(s)	1069
SspMI	CTAG	4 cut(s)	84, 153, 371, 1086
StuI	AGGCCT	1 cut(s)	1154
StyD4I	CCNGG	6 cut(s)	27, 969, 991, 1094, 1154, 1348
TaiI	ACGT	1 cut(s)	595
TasI	AATT	6 cut(s)	530, 1057, 1162, 1213, 1218, 1316
TatI	WGTACW	1 cut(s)	1088
TfiI	GAWTC	3 cut(s)	374, 435, 1268
Tru1I	TTAA	4 cut(s)	65, 179, 269, 486
Tru9I	TTAA	4 cut(s)	65, 179, 269, 486
TscAI	CASTG	3 cut(s)	208, 391, 502
TseI	GCWGC	4 cut(s)	447, 650, 653, 781
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	3 cut(s)	208, 391, 502
Tth111I	GACNNNGTC	1 cut(s)	366
VpaK11BI	GGWCC	3 cut(s)	45, 492, 563
XapI	RAATTY	2 cut(s)	1213, 1316
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	977
XmiI	GTMKAC	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	1069
XspI	CTAG	4 cut(s)	84, 153, 371, 1086
ZrmI	AGTACT	1 cut(s)	1090
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.