Rorug01G0110800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002394
Physical Location & Seq
Reverse (-)
19772755 .. 19780884
8130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0110800.1

Sequence Viewer

Length: 1095 bp
ATGGAGCAAACCACCATCGTCTCATTCTGTCTCTTTCTTCTCTACATCTCCACTTGTCCACAAGTACTTCATTCAGCCATAACCTCCGACCACCACCACCGGCACCGCCACCAACGCCATGACAGGAGATCTGTAAAGCTTTTTGTTTTCGGGGATTCGTATGCTGATACTGGGAACAGCGGCAAATCTGCAACTGGTTCGTGGAAGCCGCCTTATGGGATCACTTTTCCCGGAAAGCCGGCAGGCCGCTTCTCCGATGGCCGCGTGCTCACTGATTATATAGCTTCCTTTTTGGGTATAAGATCTCTAGTACCTTACGAATTGAGAAACACTGAAGAGAAATCGAAACTAAGGAACGGGATGAACTTTGCATATGGAGGAACTGGTGTTTTTGAGACTTTGGTGAGTGCACCAAACATGACTACCCAAATCGACTTTCTCCAACAACTAGTCGAAGAAAAATTGTATACCAAAAGTGACTTGGACTCGTCCGTTGCTTTAGTATCACTAGGTGGAAACGACTATGCTGCTTATTTTCTTAAAGGAAACCAGAGTCAGGATTTTTCAGCGGTGTCCACATCGATTGTCAACCAGCTTGTGGTGAACATAAAGCGTATAAATGATTTGGGAGTGCGAAAATTATTGGTTACAGCAATAGAGCCCATGGGATGTTTGCCAGCCGCAACTTCCATTTTTTCTTCTTATCAGAATTGCAGTGAAAGTATGAATGCAGGTTCAAGATTCCACAACCAGATTTTGCACCAAAAGGTTGAAGATTTAAAGAAGCAGACAACTACTAGATCTACATTTGTAATCTTGGATCTCTATAATGCATTTCTGTCCGCAATTCAACAACAAAAACACCTGCAACAAGCAGGAAATTCGACAAGATCAGAGAATCCACTGATGCCATGCTGTGTTGGGGTGAGCAGCGAATACTCGTGTGGGAGTGTGGACGAGAAAAGTGGAGCAAACAAGTACACAGTGTGCAGTAATCCGGAAAGGTCTTTCTTTTGGGACATGGAGCACCTTTCGCAGAATGGCTGGCATGCTGTTTATTCTGCAATCAAGTCTTCTCTTCGTCCATTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INCENP_ARK-bind

Protein Analysis

364

Amino Acids

40.52

Weight (kDa)

8.68

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 355 3.6e-26 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 873
Acc36I ACCTGC 2 cut(s) 722, 873
AccB1I GGYRCC 1 cut(s) 102
AccB7I CCANNNNNTGG 1 cut(s) 598
AccI GTMKAC 1 cut(s) 467
AccII CGCG 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 997
AciI CCGC 8 cut(s) 106, 180, 209, 247, 262, 569, 681, 843
AclWI GGATC 2 cut(s) 227, 828
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 880
AcuI CTGAAG 1 cut(s) 354
AdeI CACNNNGTG 2 cut(s) 512, 987
AfaI GTAC 3 cut(s) 66, 312, 980
AfiI CCNNNNNNNGG 3 cut(s) 215, 556, 598
AgsI TTSAA 3 cut(s) 738, 773, 851
AhlI ACTAGT 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 3 cut(s) 139, 284, 595
AluI AGCT 3 cut(s) 139, 284, 595
Alw21I GWGCWC 3 cut(s) 270, 412, 1029
Alw26I GTCTC 3 cut(s) 25, 35, 389
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 2 cut(s) 227, 828
Aor13HI TCCGGA 1 cut(s) 997
AoxI GGCC 2 cut(s) 244, 259
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 527, 930
ApoI RAATTY 1 cut(s) 880
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 415, 613, 937
BaeGI GKGCMC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 663
BauI CACGAG 1 cut(s) 940
BbsI GAAGAC 1 cut(s) 1065
Bbv12I GWGCWC 3 cut(s) 270, 412, 1029
BbvI GCAGC 2 cut(s) 514, 942
BccI CCATC 2 cut(s) 23, 251
BcgI CGANNNNNNTGC 6 cut(s) 180, 214, 509, 543, 864, 898
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 25, 35, 389
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 4 cut(s) 308, 449, 509, 798
BfuAI ACCTGC 2 cut(s) 722, 873
BglII AGATCT 3 cut(s) 128, 302, 800
BisI GCNGC 7 cut(s) 181, 209, 247, 262, 528, 681, 931
BlsI GCNGC 7 cut(s) 182, 210, 248, 263, 529, 682, 932
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 897
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 1065
BpuMI CCSGG 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 663
BsaWI WCCGGW 1 cut(s) 997
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 556, 598
Bse118I RCCGGY 2 cut(s) 99, 238
Bse1I ACTGG 3 cut(s) 175, 199, 388
Bse3DI GCAATG 1 cut(s) 1085
BseAI TCCGGA 1 cut(s) 997
BseCI ATCGAT 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 2 cut(s) 366, 674
BseLI CCNNNNNNNGG 3 cut(s) 215, 556, 598
BseMI GCAATG 1 cut(s) 1085
BseNI ACTGG 3 cut(s) 175, 199, 388
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 2 cut(s) 514, 942
BsgI GTGCAG 1 cut(s) 1009
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 246, 261
BshNI GGYRCC 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 581
BsiHKAI GWGCWC 3 cut(s) 270, 412, 1029
BsiSI CCGG 4 cut(s) 100, 231, 239, 998
BslFI GGGAC 1 cut(s) 1031
BslI CCNNNNNNNGG 3 cut(s) 215, 556, 598
BsmAI GTCTC 3 cut(s) 25, 35, 389
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 1031
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 2 cut(s) 246, 261
Bsp1286I GDGCHC 4 cut(s) 270, 412, 663, 1029
Bsp13I TCCGGA 1 cut(s) 997
Bsp143I GATC 6 cut(s) 128, 219, 302, 800, 820, 890
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 8 cut(s) 106, 180, 209, 247, 262, 569, 681, 843
BspANI GGCC 2 cut(s) 246, 261
BspDI ATCGAT 1 cut(s) 581
BspEI TCCGGA 1 cut(s) 997
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 104
BspMI ACCTGC 2 cut(s) 722, 873
BspPI GGATC 2 cut(s) 227, 828
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 1085
BsrFI RCCGGY 2 cut(s) 99, 238
BsrI ACTGG 3 cut(s) 175, 199, 388
BssAI RCCGGY 2 cut(s) 99, 238
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 6 cut(s) 128, 219, 302, 800, 820, 890
BssNAI GTATAC 1 cut(s) 468
BssSI CACGAG 1 cut(s) 940
BssT1I CCWWGG 1 cut(s) 663
Bst1107I GTATAC 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 940
Bst4CI ACNGT 1 cut(s) 985
Bst6I CTCTTC 2 cut(s) 330, 1083
BstC8I GCNNGC 6 cut(s) 240, 244, 266, 678, 1046, 1050
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 366, 674
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 6 cut(s) 131, 222, 305, 803, 823, 893
BstMAI GTCTC 3 cut(s) 25, 35, 389
BstMBI GATC 6 cut(s) 128, 219, 302, 800, 820, 890
BstMWI GCNNNNNNNGC 2 cut(s) 114, 1033
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 1 cut(s) 229
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 514, 942
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 4 cut(s) 128, 302, 800, 820
BstYI RGATCY 4 cut(s) 128, 302, 800, 820
BstZ17I GTATAC 1 cut(s) 468
Bsu15I ATCGAT 1 cut(s) 581
BsuRI GGCC 2 cut(s) 246, 261
BsuTUI ATCGAT 1 cut(s) 581
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 366, 674
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 5 cut(s) 270, 330, 721, 902, 990
BveI ACCTGC 2 cut(s) 722, 873
Cac8I GCNNGC 6 cut(s) 240, 244, 266, 678, 1046, 1050
Cfr10I RCCGGY 2 cut(s) 99, 238
ClaI ATCGAT 1 cut(s) 581
Csp6I GTAC 3 cut(s) 65, 311, 979
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 6 cut(s) 119, 418, 664, 912, 1021, 1049
CviQI GTAC 3 cut(s) 65, 311, 979
DdeI CTNAG 1 cut(s) 350
DpnI GATC 6 cut(s) 130, 221, 304, 802, 822, 892
DpnII GATC 6 cut(s) 128, 219, 302, 800, 820, 890
DraI TTTAAA 1 cut(s) 780
DraIII CACNNNGTG 2 cut(s) 512, 987
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 330, 1083
EarI CTCTTC 2 cut(s) 330, 1083
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 6 cut(s) 122, 421, 667, 915, 1024, 1052
FaqI GGGAC 1 cut(s) 1031
FatI CATG 6 cut(s) 118, 417, 663, 911, 1020, 1048
FauNDI CATATG 1 cut(s) 373
FblI GTMKAC 1 cut(s) 467
Fnu4HI GCNGC 7 cut(s) 181, 209, 247, 262, 528, 681, 931
FokI GGATG 2 cut(s) 373, 681
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 7 cut(s) 181, 209, 247, 262, 528, 681, 931
FspBI CTAG 4 cut(s) 308, 449, 509, 798
GluI GCNGC 7 cut(s) 181, 209, 247, 262, 528, 681, 931
HaeIII GGCC 2 cut(s) 246, 261
HapII CCGG 4 cut(s) 100, 231, 239, 998
Hin1II CATG 6 cut(s) 122, 421, 667, 915, 1024, 1052
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 5 cut(s) 155, 485, 553, 741, 898
HpaII CCGG 4 cut(s) 100, 231, 239, 998
HphI GGTGA 3 cut(s) 415, 613, 937
Hpy166II GTNNAC 8 cut(s) 59, 410, 468, 576, 589, 604, 955, 981
Hpy188I TCNGA 4 cut(s) 88, 256, 708, 895
Hpy188III TCNNGA 3 cut(s) 557, 738, 998
Hpy8I GTNNAC 8 cut(s) 59, 410, 468, 576, 589, 604, 955, 981
HpyCH4III ACNGT 1 cut(s) 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 1033
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 6 cut(s) 122, 421, 667, 915, 1024, 1052
Kpn2I TCCGGA 1 cut(s) 997
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
Kzo9I GATC 6 cut(s) 128, 219, 302, 800, 820, 890
LmnI GCTCC 3 cut(s) 4, 968, 1024
Lsp1109I GCAGC 2 cut(s) 514, 942
LweI GCATC 1 cut(s) 897
MaeI CTAG 4 cut(s) 308, 449, 509, 798
MaeIII GTNAC 2 cut(s) 476, 646
MalI GATC 6 cut(s) 130, 221, 304, 802, 822, 892
MboI GATC 6 cut(s) 128, 219, 302, 800, 820, 890
MboII GAAGA 7 cut(s) 29, 347, 467, 690, 785, 1065, 1070
MflI RGATCY 4 cut(s) 128, 302, 800, 820
MhlI GDGCHC 4 cut(s) 270, 412, 663, 1029
MluCI AATT 6 cut(s) 320, 461, 638, 709, 846, 880
MlyI GAGTC 2 cut(s) 479, 562
MmeI TCCRAC 2 cut(s) 111, 466
MnlI CCTC 2 cut(s) 94, 371
Mph1103I ATGCAT 1 cut(s) 835
MroI TCCGGA 1 cut(s) 997
MroNI GCCGGC 1 cut(s) 238
MseI TTAA 3 cut(s) 540, 779, 1093
MspA1I CMGCKG 2 cut(s) 180, 569
MspI CCGG 4 cut(s) 100, 231, 239, 998
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 733
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 114, 1033
NaeI GCCGGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 663
NdeI CATATG 1 cut(s) 373
NdeII GATC 6 cut(s) 128, 219, 302, 800, 820, 890
NgoMIV GCCGGC 1 cut(s) 238
NlaIII CATG 6 cut(s) 122, 421, 667, 915, 1024, 1052
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 1 cut(s) 1052
PaeI GCATGC 1 cut(s) 1052
PaqCI CACCTGC 1 cut(s) 873
PcsI WCGNNNNNNNCGW 1 cut(s) 1087
PctI GAATGC 1 cut(s) 733
PdiI GCCGGC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 155, 741, 898
PflMI CCANNNNNTGG 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 7 cut(s) 182, 210, 248, 263, 529, 682, 932
PleI GAGTC 2 cut(s) 479, 561
PpsI GAGTC 2 cut(s) 479, 561
PspN4I GGNNCC 1 cut(s) 104
PsuI RGATCY 4 cut(s) 128, 302, 800, 820
RsaI GTAC 3 cut(s) 66, 312, 980
RsaNI GTAC 3 cut(s) 65, 311, 979
SaqAI TTAA 3 cut(s) 540, 779, 1093
SatI GCNGC 7 cut(s) 181, 209, 247, 262, 528, 681, 931
Sau3AI GATC 6 cut(s) 128, 219, 302, 800, 820, 890
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 2 cut(s) 479, 562
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 4 cut(s) 270, 412, 663, 1029
SfaNI GCATC 1 cut(s) 897
SpeI ACTAGT 1 cut(s) 448
SphI GCATGC 1 cut(s) 1052
Sse9I AATT 6 cut(s) 320, 461, 638, 709, 846, 880
SsiI CCGC 8 cut(s) 106, 180, 209, 247, 262, 569, 681, 843
SspMI CTAG 4 cut(s) 308, 449, 509, 798
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 985
TaqI TCGA 5 cut(s) 344, 432, 453, 581, 884
TasI AATT 6 cut(s) 320, 461, 638, 709, 846, 880
TatI WGTACW 2 cut(s) 64, 978
TauI GCSGC 5 cut(s) 183, 211, 249, 264, 683
TfiI GAWTC 3 cut(s) 155, 741, 898
Tru1I TTAA 3 cut(s) 540, 779, 1093
Tru9I TTAA 3 cut(s) 540, 779, 1093
TscAI CASTG 5 cut(s) 277, 337, 721, 909, 990
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 2 cut(s) 527, 930
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 3 cut(s) 59, 377, 740
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 5 cut(s) 277, 337, 721, 909, 990
Van91I CCANNNNNTGG 1 cut(s) 598
VneI GTGCAC 1 cut(s) 408
XapI RAATTY 1 cut(s) 880
XceI RCATGY 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 467
XspI CTAG 4 cut(s) 308, 449, 509, 798
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.