No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 |
| fragaria_vesca | FvH4_7g06090 FvH4_7g06090 |
| malus_domestica | MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1 |
| prunus_persica | Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1 |
| pyrus_communis | pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330 |
| rosa_chinensis | RchiOBHm_Chr1g0333641 |
| rosa_laevigata | RLG00000029543 |
| rosa_multiflora | Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00317360 |
| rosa_rugosa | Rorug01G0110700 Rorug01G0110800 |
| rosa_samantha | Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500 |
| rosa_wichuraiana | Rw0G003340 Rw1G011110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 116, 2029 |
| Acc36I | ACCTGC | 2 cut(s) | 1561, 5077 |
| Acc65I | GGTACC | 2 cut(s) | 2080, 5065 |
| AccB1I | GGYRCC | 3 cut(s) | 2046, 2080, 5065 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3760 |
| AccIII | TCCGGA | 1 cut(s) | 2458 |
| AciI | CCGC | 6 cut(s) | 440, 1107, 1568, 1608, 2767, 5595 |
| AcoI | YGGCCR | 2 cut(s) | 3751, 4099 |
| AcuI | CTGAAG | 8 cut(s) | 723, 1842, 1947, 2166, 3337, 3942, 4821, 5577 |
| AcyI | GRCGYC | 2 cut(s) | 1707, 4773 |
| AfeI | AGCGCT | 1 cut(s) | 4874 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 158, 587, 3760 |
| AflII | CTTAAG | 1 cut(s) | 3526 |
| AflIII | ACRYGT | 2 cut(s) | 1153, 1399 |
| AgeI | ACCGGT | 1 cut(s) | 1942 |
| AhlI | ACTAGT | 1 cut(s) | 4226 |
| AjiI | CACGTC | 1 cut(s) | 2278 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4216, 4248 |
| Alw21I | GWGCWC | 7 cut(s) | 292, 383, 1064, 1114, 2978, 3487, 3956 |
| Alw26I | GTCTC | 8 cut(s) | 1390, 1809, 2536, 2558, 3614, 4191, 4969, 5513 |
| Alw44I | GTGCAC | 2 cut(s) | 379, 3483 |
| Ama87I | CYCGRG | 5 cut(s) | 285, 2450, 2700, 3333, 5287 |
| Aor13HI | TCCGGA | 1 cut(s) | 2458 |
| Aor51HI | AGCGCT | 1 cut(s) | 4874 |
| ApaLI | GTGCAC | 2 cut(s) | 379, 3483 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 392, 424, 1085, 1117 |
| AseI | ATTAAT | 2 cut(s) | 608, 1734 |
| AsiGI | ACCGGT | 1 cut(s) | 1942 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3019, 5200 |
| Asp718I | GGTACC | 2 cut(s) | 2080, 5065 |
| AspLEI | GCGC | 2 cut(s) | 3686, 4875 |
| AspS9I | GGNCC | 9 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658, 4786, 5120 |
| AsuHPI | GGTGA | 9 cut(s) | 570, 1128, 1244, 1613, 2787, 2831, 3027, 3386, 3414 |
| AvaI | CYCGRG | 5 cut(s) | 285, 2450, 2700, 3333, 5287 |
| AvaII | GGWCC | 7 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658 |
| AxyI | CCTNAGG | 2 cut(s) | 2799, 3426 |
| BaeGI | GKGCMC | 5 cut(s) | 383, 626, 2786, 3487, 4481 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5413, 5446 |
| BalI | TGGCCA | 2 cut(s) | 3753, 4101 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BanI | GGYRCC | 3 cut(s) | 2046, 2080, 5065 |
| BanII | GRGCYC | 2 cut(s) | 1064, 2978 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5049, 5081 |
| BauI | CACGAG | 2 cut(s) | 4563, 5279 |
| BbsI | GAAGAC | 1 cut(s) | 5064 |
| Bbv12I | GWGCWC | 7 cut(s) | 292, 383, 1064, 1114, 2978, 3487, 3956 |
| BbvCI | CCTCAGC | 3 cut(s) | 1140, 1650, 3162 |
| BciVI | GTATCC | 6 cut(s) | 481, 709, 2161, 3463, 4159, 4201 |
| BcoDI | GTCTC | 8 cut(s) | 1390, 1809, 2536, 2558, 3614, 4191, 4969, 5513 |
| BcuI | ACTAGT | 1 cut(s) | 4226 |
| BfmI | CTRYAG | 7 cut(s) | 893, 2034, 2115, 2290, 2511, 4749, 5070 |
| BfoI | RGCGCY | 1 cut(s) | 4876 |
| BfrI | CTTAAG | 1 cut(s) | 3526 |
| BfuAI | ACCTGC | 2 cut(s) | 1561, 5077 |
| BfuI | GTATCC | 6 cut(s) | 481, 709, 2161, 3463, 4159, 4201 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4793 |
| BglII | AGATCT | 3 cut(s) | 21, 1034, 1286 |
| BlpI | GCTNAGC | 1 cut(s) | 2995 |
| BmcAI | AGTACT | 4 cut(s) | 1663, 1687, 2065, 5221 |
| Bme18I | GGWCC | 7 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658 |
| BmeT110I | CYCGRG | 5 cut(s) | 285, 2450, 2700, 3333, 5287 |
| BmgBI | CACGTC | 1 cut(s) | 2278 |
| BmgT120I | GGNCC | 9 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658, 4786, 5120 |
| BmiI | GGNNCC | 9 cut(s) | 507, 2048, 2082, 2226, 2638, 3727, 3872, 4680, 5067 |
| BmrI | ACTGGG | 3 cut(s) | 366, 1674, 2196 |
| BmsI | GCATC | 7 cut(s) | 2362, 2575, 3452, 4327, 4412, 4973, 5587 |
| BmuI | ACTGGG | 3 cut(s) | 366, 1674, 2196 |
| BpiI | GAAGAC | 1 cut(s) | 5064 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 264, 296 |
| BpmI | CTGGAG | 9 cut(s) | 291, 438, 507, 1504, 3927, 3929, 4173, 4280, 4811 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1140, 1650, 3162, 3792 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2995 |
| BpuEI | CTTGAG | 8 cut(s) | 648, 2203, 2667, 3244, 3300, 3818, 4861, 4889 |
| BsaAI | YACGTR | 1 cut(s) | 5036 |
| BsaHI | GRCGYC | 2 cut(s) | 1707, 4773 |
| BsaI | GGTCTC | 1 cut(s) | 1809 |
| BsaWI | WCCGGW | 2 cut(s) | 1942, 2458 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 26, 77, 107, 588, 618, 3902, 3932 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 158, 587, 3760 |
| Bse118I | RCCGGY | 1 cut(s) | 1942 |
| Bse21I | CCTNAGG | 2 cut(s) | 2799, 3426 |
| Bse3DI | GCAATG | 4 cut(s) | 3702, 3837, 5248, 5343 |
| BseAI | TCCGGA | 1 cut(s) | 2458 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 158, 587, 3760 |
| BseMI | GCAATG | 4 cut(s) | 3702, 3837, 5248, 5343 |
| BseRI | GAGGAG | 3 cut(s) | 114, 130, 2920 |
| BseSI | GKGCMC | 5 cut(s) | 383, 626, 2786, 3487, 4481 |
| BseYI | CCCAGC | 2 cut(s) | 461, 745 |
| BsgI | GTGCAG | 4 cut(s) | 612, 978, 1857, 1926 |
| BshNI | GGYRCC | 3 cut(s) | 2046, 2080, 5065 |
| BshTI | ACCGGT | 1 cut(s) | 1942 |
| BsiHKAI | GWGCWC | 7 cut(s) | 292, 383, 1064, 1114, 2978, 3487, 3956 |
| BsiHKCI | CYCGRG | 5 cut(s) | 285, 2450, 2700, 3333, 5287 |
| BsiSI | CCGG | 3 cut(s) | 1943, 2459, 4400 |
| BslFI | GGGAC | 6 cut(s) | 104, 221, 551, 2416, 3739, 4237 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 158, 587, 3760 |
| BsmAI | GTCTC | 8 cut(s) | 1390, 1809, 2536, 2558, 3614, 4191, 4969, 5513 |
| BsmBI | CGTCTC | 1 cut(s) | 5513 |
| BsmFI | GGGAC | 6 cut(s) | 104, 221, 551, 2416, 3739, 4237 |
| BsmI | GAATGC | 3 cut(s) | 2334, 3903, 4297 |
| Bso31I | GGTCTC | 1 cut(s) | 1809 |
| BsoBI | CYCGRG | 5 cut(s) | 285, 2450, 2700, 3333, 5287 |
| Bsp13I | TCCGGA | 1 cut(s) | 2458 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2995 |
| Bsp19I | CCATGG | 1 cut(s) | 2640 |
| BspACI | CCGC | 6 cut(s) | 440, 1107, 1568, 1608, 2767, 5595 |
| BspEI | TCCGGA | 1 cut(s) | 2458 |
| BspLI | GGNNCC | 9 cut(s) | 507, 2048, 2082, 2226, 2638, 3727, 3872, 4680, 5067 |
| BspMAI | CTGCAG | 5 cut(s) | 2038, 2119, 2515, 4753, 5074 |
| BspMI | ACCTGC | 2 cut(s) | 1561, 5077 |
| BspQI | GCTCTTC | 2 cut(s) | 3685, 3961 |
| BspT107I | GGYRCC | 3 cut(s) | 2046, 2080, 5065 |
| BspTI | CTTAAG | 1 cut(s) | 3526 |
| BspTNI | GGTCTC | 1 cut(s) | 1809 |
| BsrDI | GCAATG | 4 cut(s) | 3702, 3837, 5248, 5343 |
| BsrFI | RCCGGY | 1 cut(s) | 1942 |
| BssAI | RCCGGY | 1 cut(s) | 1942 |
| BssNI | GRCGYC | 2 cut(s) | 1707, 4773 |
| BssSI | CACGAG | 2 cut(s) | 4563, 5279 |
| BssT1I | CCWWGG | 2 cut(s) | 2640, 3759 |
| Bst2BI | CACGAG | 2 cut(s) | 4563, 5279 |
| BstACI | GRCGYC | 2 cut(s) | 1707, 4773 |
| BstAFI | CTTAAG | 1 cut(s) | 3526 |
| BstBAI | YACGTR | 1 cut(s) | 5036 |
| BstC8I | GCNNGC | 6 cut(s) | 339, 1891, 2229, 3901, 3931, 3935 |
| BstDSI | CCRYGG | 1 cut(s) | 2640 |
| BstEII | GGTNACC | 1 cut(s) | 1492 |
| BstH2I | RGCGCY | 1 cut(s) | 4876 |
| BstHHI | GCGC | 2 cut(s) | 3686, 4875 |
| BstMAI | GTCTC | 8 cut(s) | 1390, 1809, 2536, 2558, 3614, 4191, 4969, 5513 |
| BstNSI | RCATGY | 5 cut(s) | 860, 1157, 1403, 3684, 3937 |
| BstPI | GGTNACC | 1 cut(s) | 1492 |
| BstSFI | CTRYAG | 7 cut(s) | 893, 2034, 2115, 2290, 2511, 4749, 5070 |
| BstSLI | GKGCMC | 5 cut(s) | 383, 626, 2786, 3487, 4481 |
| BstV2I | GAAGAC | 1 cut(s) | 5064 |
| BstX2I | RGATCY | 9 cut(s) | 21, 505, 682, 773, 1034, 1286, 1523, 2504, 3740 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3907 |
| BstYI | RGATCY | 9 cut(s) | 21, 505, 682, 773, 1034, 1286, 1523, 2504, 3740 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2799, 3426 |
| BsuI | GTATCC | 6 cut(s) | 481, 709, 2161, 3463, 4159, 4201 |
| BtgI | CCRYGG | 1 cut(s) | 2640 |
| BtrI | CACGTC | 1 cut(s) | 2278 |
| BtsI | GCAGTG | 3 cut(s) | 290, 449, 966 |
| BveI | ACCTGC | 2 cut(s) | 1561, 5077 |
| Cac8I | GCNNGC | 6 cut(s) | 339, 1891, 2229, 3901, 3931, 3935 |
| CfoI | GCGC | 2 cut(s) | 3686, 4875 |
| Cfr10I | RCCGGY | 1 cut(s) | 1942 |
| Cfr13I | GGNCC | 9 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658, 4786, 5120 |
| CseI | GACGC | 4 cut(s) | 548, 1715, 4762, 4802 |
| CspAI | ACCGGT | 1 cut(s) | 1942 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3718, 3753 |
| DraI | TTTAAA | 1 cut(s) | 2320 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 116, 2029 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 116, 2029 |
| EaeI | YGGCCR | 2 cut(s) | 3751, 4099 |
| EciI | GGCGGA | 1 cut(s) | 1122 |
| Ecl136II | GAGCTC | 2 cut(s) | 1062, 2976 |
| Eco130I | CCWWGG | 2 cut(s) | 2640, 3759 |
| Eco147I | AGGCCT | 3 cut(s) | 2688, 2919, 5285 |
| Eco24I | GRGCYC | 2 cut(s) | 1064, 2978 |
| Eco31I | GGTCTC | 1 cut(s) | 1809 |
| Eco47I | GGWCC | 7 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658 |
| Eco47III | AGCGCT | 1 cut(s) | 4874 |
| Eco53kI | GAGCTC | 2 cut(s) | 1062, 2976 |
| Eco57I | CTGAAG | 8 cut(s) | 723, 1842, 1947, 2166, 3337, 3942, 4821, 5577 |
| Eco81I | CCTNAGG | 2 cut(s) | 2799, 3426 |
| Eco88I | CYCGRG | 5 cut(s) | 285, 2450, 2700, 3333, 5287 |
| Eco91I | GGTNACC | 1 cut(s) | 1492 |
| EcoICRI | GAGCTC | 2 cut(s) | 1062, 2976 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2482, 4119, 4786, 5120 |
| EcoO65I | GGTNACC | 1 cut(s) | 1492 |
| EcoRI | GAATTC | 3 cut(s) | 1843, 4463, 5344 |
| EcoT14I | CCWWGG | 2 cut(s) | 2640, 3759 |
| EcoT22I | ATGCAT | 2 cut(s) | 3614, 4342 |
| EcoT38I | GRGCYC | 2 cut(s) | 1064, 2978 |
| ErhI | CCWWGG | 2 cut(s) | 2640, 3759 |
| Esp3I | CGTCTC | 1 cut(s) | 5513 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4844, 4876 |
| FaqI | GGGAC | 6 cut(s) | 104, 221, 551, 2416, 3739, 4237 |
| FauNDI | CATATG | 2 cut(s) | 3399, 4426 |
| FriOI | GRGCYC | 2 cut(s) | 1064, 2978 |
| GlaI | GCGC | 2 cut(s) | 3685, 4874 |
| GsaI | CCCAGC | 2 cut(s) | 465, 749 |
| GsuI | CTGGAG | 9 cut(s) | 291, 438, 507, 1504, 3927, 3929, 4173, 4280, 4811 |
| HaeII | RGCGCY | 1 cut(s) | 4876 |
| HapII | CCGG | 3 cut(s) | 1943, 2459, 4400 |
| HgaI | GACGC | 4 cut(s) | 548, 1715, 4762, 4802 |
| HhaI | GCGC | 2 cut(s) | 3686, 4875 |
| Hin1I | GRCGYC | 2 cut(s) | 1707, 4773 |
| Hin6I | GCGC | 2 cut(s) | 3684, 4873 |
| HinP1I | GCGC | 2 cut(s) | 3684, 4873 |
| HincII | GTYRAC | 5 cut(s) | 49, 1558, 1638, 1743, 3079 |
| HindII | GTYRAC | 5 cut(s) | 49, 1558, 1638, 1743, 3079 |
| HindIII | AAGCTT | 4 cut(s) | 3516, 4249, 4502, 5539 |
| HpaI | GTTAAC | 2 cut(s) | 1558, 3079 |
| HpaII | CCGG | 3 cut(s) | 1943, 2459, 4400 |
| HphI | GGTGA | 9 cut(s) | 570, 1128, 1244, 1613, 2787, 2831, 3027, 3386, 3414 |
| HpyCH4IV | ACGT | 4 cut(s) | 1554, 2277, 3895, 5035 |
| HpySE526I | ACGT | 4 cut(s) | 1554, 2277, 3895, 5035 |
| Hsp92I | GRCGYC | 2 cut(s) | 1707, 4773 |
| HspAI | GCGC | 2 cut(s) | 3684, 4873 |
| Kpn2I | TCCGGA | 1 cut(s) | 2458 |
| KpnI | GGTACC | 2 cut(s) | 2084, 5069 |
| KspAI | GTTAAC | 2 cut(s) | 1558, 3079 |
| LguI | GCTCTTC | 2 cut(s) | 3685, 3961 |
| LweI | GCATC | 7 cut(s) | 2362, 2575, 3452, 4327, 4412, 4973, 5587 |
| MaeII | ACGT | 4 cut(s) | 1554, 2277, 3895, 5035 |
| MaeIII | GTNAC | 9 cut(s) | 514, 1492, 1668, 1972, 4079, 4330, 4560, 4688, 4756 |
| MfeI | CAATTG | 5 cut(s) | 870, 2721, 3888, 4008, 5582 |
| MflI | RGATCY | 9 cut(s) | 21, 505, 682, 773, 1034, 1286, 1523, 2504, 3740 |
| MlsI | TGGCCA | 2 cut(s) | 3753, 4101 |
| MluNI | TGGCCA | 2 cut(s) | 3753, 4101 |
| MlyI | GAGTC | 1 cut(s) | 2017 |
| MmeI | TCCRAC | 4 cut(s) | 196, 675, 1317, 4887 |
| Mox20I | TGGCCA | 2 cut(s) | 3753, 4101 |
| Mph1103I | ATGCAT | 2 cut(s) | 3614, 4342 |
| MroI | TCCGGA | 1 cut(s) | 2458 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3019, 5200 |
| MscI | TGGCCA | 2 cut(s) | 3753, 4101 |
| MslI | CAYNNNNRTG | 7 cut(s) | 861, 909, 1404, 2052, 2583, 3384, 3497 |
| Msp20I | TGGCCA | 2 cut(s) | 3753, 4101 |
| MspA1I | CMGCKG | 5 cut(s) | 2120, 4307, 4748, 4799, 5595 |
| MspCI | CTTAAG | 1 cut(s) | 3526 |
| MspI | CCGG | 3 cut(s) | 1943, 2459, 4400 |
| MunI | CAATTG | 5 cut(s) | 870, 2721, 3888, 4008, 5582 |
| Mva1269I | GAATGC | 3 cut(s) | 2334, 3903, 4297 |
| NcoI | CCATGG | 1 cut(s) | 2640 |
| NdeI | CATATG | 2 cut(s) | 3399, 4426 |
| NlaIV | GGNNCC | 9 cut(s) | 507, 2048, 2082, 2226, 2638, 3727, 3872, 4680, 5067 |
| NmeAIII | GCCGAG | 1 cut(s) | 3019 |
| NmuCI | GTSAC | 2 cut(s) | 1668, 4560 |
| NsiI | ATGCAT | 2 cut(s) | 3614, 4342 |
| NspI | RCATGY | 5 cut(s) | 860, 1157, 1403, 3684, 3937 |
| PaeI | GCATGC | 1 cut(s) | 3937 |
| PaeR7I | CTCGAG | 2 cut(s) | 285, 5287 |
| PasI | CCCWGGG | 1 cut(s) | 5123 |
| PceI | AGGCCT | 3 cut(s) | 2688, 2919, 5285 |
| PciI | ACATGT | 2 cut(s) | 1153, 1399 |
| PciSI | GCTCTTC | 2 cut(s) | 3685, 3961 |
| PctI | GAATGC | 3 cut(s) | 2334, 3903, 4297 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3019, 5200 |
| PflFI | GACNNNGTC | 1 cut(s) | 4440 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3760 |
| PfoI | TCCNGGA | 2 cut(s) | 523, 5225 |
| PinAI | ACCGGT | 1 cut(s) | 1942 |
| PleI | GAGTC | 1 cut(s) | 2017 |
| PpsI | GAGTC | 1 cut(s) | 2017 |
| Ppu21I | YACGTR | 1 cut(s) | 5036 |
| PpuMI | RGGWCCY | 2 cut(s) | 2482, 4119 |
| PscI | ACATGT | 2 cut(s) | 1153, 1399 |
| PshBI | ATTAAT | 2 cut(s) | 608, 1734 |
| Psp124BI | GAGCTC | 2 cut(s) | 1064, 2978 |
| Psp5II | RGGWCCY | 2 cut(s) | 2482, 4119 |
| PspEI | GGTNACC | 1 cut(s) | 1492 |
| PspFI | CCCAGC | 2 cut(s) | 461, 745 |
| PspN4I | GGNNCC | 9 cut(s) | 507, 2048, 2082, 2226, 2638, 3727, 3872, 4680, 5067 |
| PspPI | GGNCC | 9 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658, 4786, 5120 |
| PspPPI | RGGWCCY | 2 cut(s) | 2482, 4119 |
| PspXI | VCTCGAGB | 2 cut(s) | 285, 5287 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 304, 336 |
| PstI | CTGCAG | 5 cut(s) | 2038, 2119, 2515, 4753, 5074 |
| PsuI | RGATCY | 9 cut(s) | 21, 505, 682, 773, 1034, 1286, 1523, 2504, 3740 |
| PsyI | GACNNNGTC | 1 cut(s) | 4440 |
| PvuII | CAGCTG | 4 cut(s) | 2120, 4307, 4748, 4799 |
| RseI | CAYNNNNRTG | 7 cut(s) | 861, 909, 1404, 2052, 2583, 3384, 3497 |
| SacI | GAGCTC | 2 cut(s) | 1064, 2978 |
| SapI | GCTCTTC | 2 cut(s) | 3685, 3961 |
| Sau96I | GGNCC | 9 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658, 4786, 5120 |
| ScaI | AGTACT | 4 cut(s) | 1663, 1687, 2065, 5221 |
| SchI | GAGTC | 1 cut(s) | 2017 |
| SfaNI | GCATC | 7 cut(s) | 2362, 2575, 3452, 4327, 4412, 4973, 5587 |
| SfcI | CTRYAG | 7 cut(s) | 893, 2034, 2115, 2290, 2511, 4749, 5070 |
| Sfr274I | CTCGAG | 2 cut(s) | 285, 5287 |
| SinI | GGWCC | 7 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658 |
| SlaI | CTCGAG | 2 cut(s) | 285, 5287 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 861, 909, 1404, 2052, 2583, 3384, 3497 |
| SpeI | ACTAGT | 1 cut(s) | 4226 |
| SphI | GCATGC | 1 cut(s) | 3937 |
| SseBI | AGGCCT | 3 cut(s) | 2688, 2919, 5285 |
| SsiI | CCGC | 6 cut(s) | 440, 1107, 1568, 1608, 2767, 5595 |
| SspI | AATATT | 2 cut(s) | 4696, 5200 |
| SstI | GAGCTC | 2 cut(s) | 1064, 2978 |
| StuI | AGGCCT | 3 cut(s) | 2688, 2919, 5285 |
| StyI | CCWWGG | 2 cut(s) | 2640, 3759 |
| TaiI | ACGT | 4 cut(s) | 1557, 2280, 3898, 5038 |
| TaqI | TCGA | 6 cut(s) | 27, 78, 286, 2406, 2534, 5288 |
| TatI | WGTACW | 7 cut(s) | 1661, 1685, 1919, 2063, 2087, 3304, 5219 |
| TauI | GCSGC | 1 cut(s) | 442 |
| TseFI | GTSAC | 2 cut(s) | 1668, 4560 |
| Tsp45I | GTSAC | 2 cut(s) | 1668, 4560 |
| TspGWI | ACGGA | 5 cut(s) | 126, 174, 2143, 3161, 4513 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4440 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3760 |
| Vha464I | CTTAAG | 1 cut(s) | 3526 |
| VneI | GTGCAC | 2 cut(s) | 379, 3483 |
| VpaK11BI | GGWCC | 7 cut(s) | 2482, 2764, 3726, 4038, 4119, 4587, 4658 |
| VspI | ATTAAT | 2 cut(s) | 608, 1734 |
| XbaI | TCTAGA | 5 cut(s) | 1037, 1289, 2951, 4018, 4444 |
| XceI | RCATGY | 5 cut(s) | 860, 1157, 1403, 3684, 3937 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1625, 4109, 5108 |
| XhoI | CTCGAG | 2 cut(s) | 285, 5287 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3019, 5200 |
| ZrmI | AGTACT | 4 cut(s) | 1663, 1687, 2065, 5221 |
| Zsp2I | ATGCAT | 2 cut(s) | 3614, 4342 |