Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038804.1

Orthogroup ID

OG0002394

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1264

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038804.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 589 bp

atgtcgacgactgagaagcactggttgcagatcttcgagggaaagcaatggattatcaacaaagccaagcaacaggccttcctcttcgaccaagacctcgcctccaaactcatcattgccggaattgcccctcctccttctcttttctcctcccaccccgacgaagttccactcccttgcacacaccgtgtgatccctttcactggtagtcattgctgtgggttcgacaagtcagttgctacagctcactacgggcagctaacaaatgatttgtgcacggaacattgtggggtaaagaaaggttttgatgtaggaggcaatgtattggatttgccacagtgcccaatcagtaatggtggatgcgcctccaatggtgttcctcgagatcatcaagaagaggatcctagtgttacgtctcctgaagatgtgagggatgcaagagtctctgatgcttaccatgattcagctttacaactggctagaggtgcagaagaggaggtatcagctttgccacagtgccacattagtaatgctgggtgtgcttctattggtgttctacaagatcagaaagaagagaattctggtggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

INCENP_ARK-bind

Protein Analysis

196

Amino Acids

21.04

Weight (kDa)

5.02

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820
fragaria_vesca	FvH4_7g06090 FvH4_7g06090
malus_domestica	MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1
prunus_persica	Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1
pyrus_communis	pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330
rosa_chinensis	RchiOBHm_Chr1g0333641
rosa_laevigata	RLG00000029543
rosa_multiflora	Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317360
rosa_rugosa	Rorug01G0110700 Rorug01G0110800
rosa_samantha	Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500
rosa_wichuraiana	Rw0G003340 Rw1G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	187, 395, 408
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	441
AdeI	CACNNNGTG	2 cut(s)	188, 190
AfiI	CCNNNNNNNGG	1 cut(s)	203
AluBI	AGCT	4 cut(s)	245, 259, 467, 506
AluI	AGCT	4 cut(s)	245, 259, 467, 506
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	420, 448
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	3 cut(s)	187, 395, 408
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	75
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	278, 344
BamHI	GGATCC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	420, 448
BfaI	CTAG	2 cut(s)	405, 480
BfmI	CTRYAG	1 cut(s)	240
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	402
BmsI	GCATC	3 cut(s)	350, 424, 439
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	26, 208, 480
Bse3DI	GCAATG	4 cut(s)	53, 114, 211, 325
BseGI	GGATG	2 cut(s)	365, 439
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	4 cut(s)	53, 114, 211, 325
BseNI	ACTGG	3 cut(s)	26, 208, 480
BseRI	GAGGAG	3 cut(s)	123, 139, 509
BseSI	GKGCMC	2 cut(s)	278, 344
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	533
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	2 cut(s)	420, 448
BsmBI	CGTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	278, 344
Bsp143I	GATC	5 cut(s)	30, 192, 385, 400, 562
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	3 cut(s)	187, 395, 408
BsrDI	GCAATG	4 cut(s)	53, 114, 211, 325
BsrI	ACTGG	3 cut(s)	26, 208, 480
BssMI	GATC	5 cut(s)	30, 192, 385, 400, 562
Bst4CI	ACNGT	3 cut(s)	188, 339, 516
Bst6I	CTCTTC	4 cut(s)	89, 390, 486, 567
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	365, 439
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	5 cut(s)	33, 195, 388, 403, 565
BstMAI	GTCTC	2 cut(s)	420, 448
BstMBI	GATC	5 cut(s)	30, 192, 385, 400, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 125, 485, 539
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	2 cut(s)	278, 344
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	30, 400
BstYI	RGATCY	2 cut(s)	30, 400
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	365, 439
BtsIMutI	CAGTG	4 cut(s)	19, 201, 344, 521
CfoI	GCGC	1 cut(s)	365
CviAII	CATG	1 cut(s)	458
CviJI	RGCY	7 cut(s)	65, 77, 245, 259, 467, 479, 506
CviKI_1	RGCY	7 cut(s)	65, 77, 245, 259, 467, 479, 506
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	5 cut(s)	32, 194, 387, 402, 564
DpnII	GATC	5 cut(s)	30, 192, 385, 400, 562
DraIII	CACNNNGTG	2 cut(s)	188, 190
Eam1104I	CTCTTC	4 cut(s)	89, 390, 486, 567
EarI	CTCTTC	4 cut(s)	89, 390, 486, 567
Eco147I	AGGCCT	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	577
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	1 cut(s)	461
FaiI	YATR	1 cut(s)	459
FatI	CATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	2 cut(s)	372, 446
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	2 cut(s)	405, 480
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	257
GsaI	CCCAGC	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	441, 461
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	2 cut(s)	6, 276
Hpy188I	TCNGA	2 cut(s)	448, 567
Hpy188III	TCNNGA	3 cut(s)	383, 392, 419
Hpy8I	GTNNAC	2 cut(s)	6, 276
Hpy99I	CGWCG	2 cut(s)	10, 164
HpyAV	CCTTC	2 cut(s)	88, 147
HpyCH4III	ACNGT	3 cut(s)	188, 339, 516
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	5 cut(s)	28, 180, 276, 437, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 125, 485, 539
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	1 cut(s)	461
HspAI	GCGC	1 cut(s)	363
Kzo9I	GATC	5 cut(s)	30, 192, 385, 400, 562
LpnPI	CCDG	8 cut(s)	7, 59, 133, 189, 432, 461, 519, 567
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	3 cut(s)	350, 424, 439
MaeI	CTAG	2 cut(s)	405, 480
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	32, 194, 387, 402, 564
MboI	GATC	5 cut(s)	30, 192, 385, 400, 562
MboII	GAAGA	6 cut(s)	25, 76, 407, 434, 503, 584
MflI	RGATCY	2 cut(s)	30, 400
MhlI	GDGCHC	2 cut(s)	278, 344
MluCI	AATT	2 cut(s)	123, 577
MlyI	GAGTC	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	4 cut(s)	25, 125, 485, 539
NdeII	GATC	5 cut(s)	30, 192, 385, 400, 562
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	381
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	402
PsuI	RGATCY	2 cut(s)	30, 400
RseI	CAYNNNNRTG	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	5 cut(s)	30, 192, 385, 400, 562
SchI	GAGTC	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	278, 344
SetI	ASST	9 cut(s)	99, 247, 261, 304, 416, 469, 487, 501, 508
SfaNI	GCATC	3 cut(s)	350, 424, 439
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	123, 577
SseBI	AGGCCT	1 cut(s)	77
SspMI	CTAG	2 cut(s)	405, 480
StuI	AGGCCT	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	188, 339, 516
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	5 cut(s)	5, 36, 87, 225, 382
TasI	AATT	2 cut(s)	123, 577
TfiI	GAWTC	1 cut(s)	461
TscAI	CASTG	4 cut(s)	26, 208, 344, 521
TseI	GCWGC	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	4 cut(s)	26, 208, 344, 521
VneI	GTGCAC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	577
XhoI	CTCGAG	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	405, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.