Rw0G003340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00114
OG0002394
Physical Location & Seq
Forward (+)
4824 .. 12393
7570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003340.1

Sequence Viewer

Length: 5475 bp
ATGTCGACGACTGAGAAGCACTGGTTGCAGATCTTCGAGGGAAAGCAATGGATTATCAACAAAGCCAAGCAGCAGGCCTTCCTCTTCGACCAGGACCTCGCCTCCAAACTCATCATTGCCGGAATTGCCCCTCCTCCTTCTCTTTTCTCCTCCCACCCCGACGTGTTGAACCATCATGAGCTGATTTCAGAAGTTCCACTCCCTCGCACACACCGTGTGATCCCTTTCACTGGTAGTCATTGCTGTGGGTTCGACAAGTCAGTTGCTACAGCTCACTACGGGCAGCTAACAAATGATTTGTGCACGGAACATTGTGGGGTAAAGAAAGGTTTTGATGTAGGAGGCAATGTATTGGATTTGCCACAGTGCCCAATCAGTAATGGTGGATGCGCCTCCAATGGTGTTCCTCGAGATCATCAAGAAGAGGATCCAAGTGTTACGTCTCCTGAAGATGTGAGGGATGCAAGAGTCTCAGATGCTTACCATGATTCAGCTTTACAACTGGCTAGAGGTGCAGAAGAGGAGGTATCAGCTTGGCCACAGTGCCACATTAGTAATGCTGGGTGTGCTTCTATTGGTGTTCTACAAGATCAGAAAGAAGAGAATTCTGGTGGTACATCTCCTGAAGATCAGAGGAATGCAAAAATGGTATGTATCCCGAAGATCAGTAATGGTGGATGTTCCTCCGATGGTGTTACTCAAGATCATAAAGAAGAGGATCCTAGTGTTACGTCTCCTGAAGATGAGAGGGATGGAAGAGTCTCAGACGTTTACCATGACTCAGCTTTAACACCGGCTAGAGGTACAGGAGAGGAGGTATCAATTTTGCCACAGGGCCACATTAGTGATGCTGGGTGTGCCTTTGATGGTGTTTTACAAGATCACAAAGAAGAAAATCCTGGTGGTGCGTCTCCTGAAGATCAGAGGGATACAAGAATGTTAGACATTTACCTCAATCCAGCTCTTTCACTGGCTAGAGTTCAAAGATCTAAGTCAAGACAAAGGGCTCTGGCAATTCGAAACAGTACACAAAAAAACTGTTCACAGGATAAGGGCAATTCTGATGGTTATGCTGGTGAAACTATCAAGTGTCTGATATCTACCCCACAGCCTGAAAATGTCGATGAATTGAATGAGAATCATTCTGAAGTGGAAAAACCAAAAATAGGAGAATTTCAAAGCAAGGAAAAAGGTTCTGACATCTACTCTGGTAGAATTACTAGATCTAGAAGCTCTGGCCATCAGGAGAACTCTTTAGATGTCAGTGGCTCTCCATGTATTTACAAGTCAAGTGATGGGATAGCTGTTGATTCTATTGGTAAATTGACACATCTGTCTAACCAAGTAATTCACCCACTGGAATTGGTTAGCTACTCTCATATAACTAATGACAGTTGTCGAGAGGGGGAATTAAAGCTGGGAGACTACTCAAGCAAGAAGCGAACCGTCGAGAAAGATTCTATGTATGCAAACTTGGAAAAAGAAGAACACACTCCAAAGGTTTTACAAGAGTTCAAAGGTCCTTCAATTTCTAAGGATGTTGCTGGGAACTCAATTGTCTGTAGGAGTCCTGTTGAAGAAACACATCTAAATGAGGATCATCACATGGTAAACACGTCCAAATCTTCACCTGAGGCACAGAAGAAAGAGGGCGAAATGGGTTTAGAAGTGGTGGACAGTAGTCCAAATGCTCCGTTTATTTTTTTGCATGAAGAAAAAGAAGCATCAGTTTTCCCAATTCTGATCAAGCAGGCTGCTGGTCATCCTCAAGATTCTTTGCTGGAGGAAACAGGAGTAGCACATCCAACTAGCACTAACATTGATCAAGGAAGCCAATGCTTAAAAGAGAACCCAGTTTCTCTTCTTCAGGACAATTTAAGACTAGAAAATGCTGAAGACTTATCTTGTGCTGGAAAAACCATGCTGGCACAGAGATTTGATTTTGGAGGGCCCAGCAAATTTTTAGAATTGTCATGTGGTGCTCCAAATGTTGAATGCTCACAGTCTGAAAATGTTGGTGAATTGAATGATAATCATCCTGAAGTGGAAAAACAAAAGATAGGAGAATTTCAAATCAAGGAAGAAGGCACTGACATCTACTCTGGTAGAATTACTAGATCTAGAAGCTCTGGCCATCAGGAGAACTCTTTAAATGCCAGTGGCTTGCCCTGCATTGGCAGGACAAGTAGTGGTATAGCAGTTGATATTGATACTGTGGAAGAGTCCTGTTTAAAAGGACTTTCTACTCCTGCTAGTAAGAAGGGGATGCAGGGCAGTTCATCAGTAAAAATGCCTCTTCCCTTCATGCACGGGGAAAAGAAACTAGAAGAAGGAATGACCATCACTACCCGTGAAAACTGTAACTCATCCCTGGAAATGGATTATCTGGGCAATTGTGAAGTTTCAGCCAAAGAAATGGAGGTCCAGAGCGGTTTAGTTGAAGCCTTTGAAGAGGAGTTCAGTAAATCTAGAAGAGCGTCACATGACAATGTGATCTCATCAGTAACAGAATCATTTGATGCTTATACGGATGCAGTTCCTAAAACTTTGCTAGAAAGTGGGAGAACTCCGAAACAGAAATGTTCTATGATAGATGATCAAACTCCCTTGCGAGTAGACTGGGATGGATTGGTTTGTAGCCCGATAAAAGAAGTAAAGGGGTCTAATTTGTCTACTGCTAATGCTGCAATACCAACGGAGTTGGTGTCAGAAGACTGTGCAGTGGATTCTAATGCCCTTTGTAATCCTCATAAATCAACAGATGTTGATTTTGCTATGGTGTCTGGGCCTGGTTCTCATAGAATCCTAGATGCAGAGATTCTTGAAGTTGAGAACCCTTATGCTGCTTTTAGGGATGAGCTGAGGAGTAACTTGGCTCAGTCGACTGTAAATGCACACATTTCTCCAGAATATGTACAAAGGAGTGCCAGTGATGACAGAGAGGTAGGTTGTTCAGAATCAACTGAATGCCAGATTGCAGAGAACTCCAAAGGAAGAAGTTTTTGGTATTCAATGGAGGGTACATCACCTACTCTTAAACGAAGAAAGATTGACGATAAAAGAGTTCATGACCTGTCTGCTTCAGTAGCCTTGAGAGAAGAGGTTCTTCACGCTGTCAAAAAAGATTCTATGTGTGCAAACTTGGAAAGAGAAGAACACAGTCCAAAGGCTTTACAAAAATTCCAAGGGCGTTCAATTTCTCAGGAGGATGATGGGAAATTAATTGTCAGTAAGAGTCCTGTTGAAGAAACACATCTAAATGAGAATCACATGGTAGAAAGGTCTGAATCTTTACCCGAGGCACAGAAGAAAGAGGGTGGAATGGGTTTGGAAGGGGAGGATAGTAGTCCAAATGCTCCATTCACTTTTTTGCATGAAGAAAAAGAAGCATCAGTTTTCTCAAGATTGATCAAGCAGGCTGCTGGACATCCTCTAGATTCTTTGCTTGAGGATACAGGAGTAGAACTTCCAACTAGCATTAACATTGATAGAGGAAGCCAATGCTTAAAAGAGGACCCAATTTGTCTTCATCTTCAGGATGATTTAAGAGTAGAAAATGTTGAAGATTGGCCTTGTGCTGGAAGAACCGTGCTTGCAAAGAGATCTGATTCTGGAGGGACCAGCAACTTCAAAGAATTGTCAGGTGGTGCTCCACATGTTGAATCCTTGGATTTGACTAGTGCGGATGACGCAATGCCTGTACTTGAGAGGTTTGTTATAAAGACAGATGATGAACCATGTAGCATTGCTGAAGAGGGAATTAGCTTTGATGAGTGGAACCTTCCAAACACTGCATTAGAGCGTGCCGGTATTCTGGAGCAGCTTTGCAAATCTGCTTGCATGCAAACTCCCGTAGCCTATTCTTTAGCTTCCTATAAGTTGCATAAAGTTCAAAATCTACAGCAATCTGTTCCAACTGGGGTTTTGGAGCATGTAGATCTGAGGACCACCTTTCCTATAAATGATAATGTCAAGCAATTAAAGGATGGTAATAGTTCTTGGAGTGAGGAAGTTGGCCCGGCCTTTTATGGAAGATCCTATTCTGATTGCCTACCAAATTTTAGTGGTCAATCTAGTTGGGATATTAAGAAACCTTATTCCTCTCCTGTTGGTAATCTTTGGGATAGAATTGCTTCAAGCTCTAGTAGTTCGGGGAAGCGAGTGAGCTCAATTCCAGAGCTTGCCTGTATTAGTGAAGAAAATGAAAATACAGACGAGGTAGCTGATACTTTTCAAGATGGCATTGTTTCAGAAGTATTAGATTGTTCTCCAAAAAGGCCACCGCTTGCAGACATTACAGAAATCCCTAACCTTGCTTCAGTTTCTAAAGCTGCAGCCTACACTGATAGATTTAGTCTAGATTCAGTAACCACCGAATTCAGTTTAACGGGGACTCATAAGAGCGTCAAAAAGAAGCCTGGAATCCAAAACAGCAGTAAGAGAAGATATAACAATAAGGAGAACCAGAGTGTATCACGAAAGAGGGCCACCGGATCACTTCAGAATAGGTTCACCAAGCCAAAGTTTTCTGGAAAAACCAGTTTGAGAAAAGGAGGCCCTAGTTTGTCAGAGGTGGAGCCCAAGCATAACAATATTGTTTCCAATATTACTTCCTTTATTCCACTTGTGCAACAGAAACAAGCAGCTGCAGCCTTACCAGGGAAGAGGGACATTAAAGTGAAGGCCCTGGAGGCTGCTGAAGCTGCAAAGCGTCTTGCAGAAAGGAAAGACAATGAACGTAAGATGAAGAAAGAAGCTATGAAGGTTGAGAGAGCAAGAGTGGAGCAAGAGAATCTGAGGAAGTTGGAGCTGCAGAGGAAAAGGAAAGAAGAGGAGAGGAAAAAAATTGAGGATGATATGGCAGCAAAGAAGAGAGAAAGGGAAGGGGAAGACAAAAAGGAGAAGCAAAGAAAAAGGATGCGTGTTGAAGAAGGGCGGAGGGAGCAGAGAGAACATGAGGACAAGTTACGTGCAGAAAAAGTAAAGAAAGAAATAAAATGCCAAGCCAGTGATGGAAGAAGATGTGAGAGTAAGGACTCAAAATGCAATACTGTGCATAAGAAAATGGACAAAGAAAGGGAACATGACACTCTTAGGAGCATTTCAGAGACTGATCCTAGGAGTTCCTGTGTTTCAGCAAATAATGCCAGAAGTGGAACAGCTGTCCATGAAGAGAAGGGCTTCAGTAATTTTGAGCATAAGGAAGAGGTACAGAGCAATTTAGACAAAGCCACAGAAAATGAGAAATTGGTTGTGCAGACAAGTCGAGAACAGTCTTATGATATCTCTCCATATAAAGAATCAGATGATGAAAACGACGAAGATGACGATATTATACCAAATAATAAATTTATTCCTTCGTGGGCAAGCAAAAATTGCCTGGCTCTGGTTGCTTCTCGCCAGAGTAGAACTGACCCAGAGGTGTTCTTCCCTCCCAAAAGCTTTCCCTGTGTAGCTGAAGTTCTGTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INCENP_ARK-bind

Protein Analysis

1824

Amino Acids

201.22

Weight (kDa)

5.3

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INCENP_ARK-bind PF03941 1768 - 1816 4.2e-06 Inner centromere protein, ARK binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3719
AasI GACNNNNNNGTC 1 cut(s) 1333
AccBSI CCGCTC 1 cut(s) 2430
AccI GTMKAC 4 cut(s) 5, 2616, 2672, 2882
AciI CCGC 4 cut(s) 2430, 3683, 4283, 4936
AclWI GGATC 9 cut(s) 214, 422, 435, 713, 726, 1605, 4029, 4501, 5108
AcoI YGGCCR 3 cut(s) 536, 1237, 2131
AcsI RAATTY 8 cut(s) 604, 1172, 1958, 2066, 3179, 4057, 4376, 5348
AdeI CACNNNGTG 2 cut(s) 215, 217
AfaI GTAC 7 cut(s) 616, 805, 1027, 2916, 3022, 3702, 5211
AfiI CCNNNNNNNGG 8 cut(s) 230, 800, 1166, 2174, 2377, 3578, 4659, 5386
AflIII ACRYGT 3 cut(s) 162, 1614, 3655
AhlI ACTAGT 1 cut(s) 3677
AjiI CACGTC 2 cut(s) 163, 1617
AjnI CCWGG 8 cut(s) 90, 898, 2370, 2788, 4417, 4657, 4686, 5379
AjuI GAANNNNNNNTTGG 2 cut(s) 2986, 3018
AleI CACNNNNGTG 1 cut(s) 843
Alw21I GWGCWC 4 cut(s) 305, 1984, 3652, 4169
Alw26I GTCTC 7 cut(s) 447, 475, 738, 766, 915, 1416, 5102
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 9 cut(s) 214, 422, 435, 713, 726, 1605, 4029, 4501, 5108
AlwNI CAGNNNCTG 1 cut(s) 5111
Ama87I CYCGRG 2 cut(s) 408, 3296
ApaI GGGCCC 1 cut(s) 1953
ApaLI GTGCAC 1 cut(s) 301
ApoI RAATTY 8 cut(s) 604, 1172, 1958, 2066, 3179, 4057, 4376, 5348
AseI ATTAAT 1 cut(s) 3221
Asp700I GAANNNNTTC 4 cut(s) 3102, 4132, 4508, 5180
AspA2I CCTAGG 1 cut(s) 5117
AspLEI GCGC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 4019
AsuHPI GGTGA 6 cut(s) 1088, 1343, 1620, 2030, 3018, 4504
AsuII TTCGAA 1 cut(s) 1018
AvaI CYCGRG 2 cut(s) 408, 3296
AvaII GGWCC 6 cut(s) 94, 1520, 2422, 3514, 3618, 3945
AvrII CCTAGG 1 cut(s) 5117
AxyI CCTNAGG 1 cut(s) 1632
BaeGI GKGCMC 3 cut(s) 305, 371, 1953
BaeI ACNNNNGTAYC 2 cut(s) 3444, 3477
BalI TGGCCA 3 cut(s) 538, 1239, 2133
BamHI GGATCC 2 cut(s) 427, 718
BanII GRGCYC 4 cut(s) 1009, 1953, 4169, 4581
BbsI GAAGAC 4 cut(s) 1902, 2718, 3518, 4896
Bbv12I GWGCWC 4 cut(s) 305, 1984, 3652, 4169
BbvCI CCTCAGC 1 cut(s) 2861
BcgI CGANNNNNNTGC 2 cut(s) 5246, 5280
BciT130I CCWGG 8 cut(s) 92, 900, 2372, 2790, 4419, 4659, 4688, 5381
BciVI GTATCC 3 cut(s) 665, 922, 3445
BclI TGATCA 4 cut(s) 1743, 1822, 2596, 3408
BcnI CCSGG 1 cut(s) 4019
BcoDI GTCTC 7 cut(s) 447, 475, 738, 766, 915, 1416, 5102
BcuI ACTAGT 1 cut(s) 3677
BfmI CTRYAG 6 cut(s) 267, 1561, 3899, 4332, 4647, 4811
BfuI GTATCC 3 cut(s) 665, 922, 3445
BglI GCCNNNNNGGC 1 cut(s) 4691
BglII AGATCT 6 cut(s) 30, 986, 1223, 2117, 3602, 3937
BlnI CCTAGG 1 cut(s) 5117
Bme1390I CCNGG 9 cut(s) 92, 900, 2372, 2790, 4019, 4419, 4659, 4688, 5381
Bme18I GGWCC 6 cut(s) 94, 1520, 2422, 3514, 3618, 3945
BmeT110I CYCGRG 2 cut(s) 408, 3296
BmgBI CACGTC 2 cut(s) 163, 1617
BmiI GGNNCC 7 cut(s) 429, 720, 1951, 3516, 3619, 3779, 4578
BmrFI CCNGG 9 cut(s) 92, 900, 2372, 2790, 4019, 4419, 4659, 4688, 5381
BmrI ACTGGG 3 cut(s) 1847, 2629, 3927
BmuI ACTGGG 3 cut(s) 1847, 2629, 3927
BoxI GACNNNNGTC 2 cut(s) 1395, 1680
BpiI GAAGAC 4 cut(s) 1902, 2718, 3518, 4896
BpmI CTGGAG 5 cut(s) 1802, 2889, 3633, 3836, 4709
Bpu10I CCTNAGC 1 cut(s) 2861
Bpu14I TTCGAA 1 cut(s) 1018
BpuEI CTTGAG 7 cut(s) 684, 1414, 1752, 3112, 3385, 3467, 3725
BpuMI CCSGG 1 cut(s) 4019
BsaAI YACGTR 1 cut(s) 4970
BsaBI GATNNNNATC 1 cut(s) 2034
BsaJI CCNNGG 7 cut(s) 2370, 3184, 3297, 3666, 4658, 4686, 5117
BsaWI WCCGGW 1 cut(s) 4490
Bsc4I CCNNNNNNNGG 8 cut(s) 230, 800, 1166, 2174, 2377, 3578, 4659, 5386
Bse118I RCCGGY 2 cut(s) 793, 3806
Bse21I CCTNAGG 1 cut(s) 1632
Bse3DI GCAATG 6 cut(s) 53, 114, 238, 352, 3699, 3744
Bse8I GATNNNNATC 1 cut(s) 2034
BseBI CCWGG 8 cut(s) 92, 900, 2372, 2790, 4419, 4659, 4688, 5381
BseDI CCNNGG 7 cut(s) 2370, 3184, 3297, 3666, 4658, 4686, 5117
BseJI GATNNNNATC 1 cut(s) 2034
BseLI CCNNNNNNNGG 8 cut(s) 230, 800, 1166, 2174, 2377, 3578, 4659, 5386
BseMI GCAATG 6 cut(s) 53, 114, 238, 352, 3699, 3744
BseMII CTCAG 9 cut(s) 486, 777, 795, 1623, 2852, 2891, 3215, 3932, 4787
BseRI GAGGAG 7 cut(s) 123, 139, 536, 827, 2468, 2878, 4847
BseSI GKGCMC 3 cut(s) 305, 371, 1953
BseYI CCCAGC 5 cut(s) 560, 851, 1417, 1544, 1952
BsgI GTGCAG 4 cut(s) 534, 2739, 4992, 5276
BsiHKAI GWGCWC 4 cut(s) 305, 1984, 3652, 4169
BsiHKCI CYCGRG 2 cut(s) 408, 3296
BsiSI CCGG 5 cut(s) 120, 794, 3807, 4019, 4491
BslFI GGGAC 3 cut(s) 3631, 4405, 4682
BslI CCNNNNNNNGG 8 cut(s) 230, 800, 1166, 2174, 2377, 3578, 4659, 5386
BsmAI GTCTC 7 cut(s) 447, 475, 738, 766, 915, 1416, 5102
BsmBI CGTCTC 3 cut(s) 447, 738, 915
BsmFI GGGAC 3 cut(s) 3631, 4405, 4682
BsmI GAATGC 3 cut(s) 643, 2000, 2972
BsoBI CYCGRG 2 cut(s) 408, 3296
Bsp119I TTCGAA 1 cut(s) 1018
Bsp120I GGGCCC 1 cut(s) 1949
Bsp1286I GDGCHC 8 cut(s) 305, 371, 1009, 1953, 1984, 3652, 4169, 4581
Bsp1407I TGTACA 1 cut(s) 2914
BspACI CCGC 4 cut(s) 2430, 3683, 4283, 4936
BspHI TCATGA 2 cut(s) 175, 3067
BspLI GGNNCC 7 cut(s) 429, 720, 1951, 3516, 3619, 3779, 4578
BspMAI CTGCAG 3 cut(s) 4336, 4651, 4815
BspPI GGATC 9 cut(s) 214, 422, 435, 713, 726, 1605, 4029, 4501, 5108
BspQI GCTCTTC 1 cut(s) 2467
BspT104I TTCGAA 1 cut(s) 1018
BsrBI CCGCTC 1 cut(s) 2430
BsrDI GCAATG 6 cut(s) 53, 114, 238, 352, 3699, 3744
BsrFI RCCGGY 2 cut(s) 793, 3806
BsrGI TGTACA 1 cut(s) 2914
BssAI RCCGGY 2 cut(s) 793, 3806
BssECI CCNNGG 7 cut(s) 2370, 3184, 3297, 3666, 4658, 4686, 5117
BssT1I CCWWGG 3 cut(s) 3184, 3666, 5117
Bst2UI CCWGG 8 cut(s) 92, 900, 2372, 2790, 4419, 4659, 4688, 5381
BstAPI GCANNNNNTGC 3 cut(s) 25, 5144, 5376
BstAUI TGTACA 1 cut(s) 2914
BstBAI YACGTR 1 cut(s) 4970
BstBI TTCGAA 1 cut(s) 1018
BstHHI GCGC 1 cut(s) 392
BstMAI GTCTC 7 cut(s) 447, 475, 738, 766, 915, 1416, 5102
BstNI CCWGG 8 cut(s) 92, 900, 2372, 2790, 4419, 4659, 4688, 5381
BstNSI RCATGY 3 cut(s) 3659, 3844, 3935
BstPAI GACNNNNGTC 2 cut(s) 1395, 1680
BstSCI CCNGG 9 cut(s) 90, 898, 2370, 2788, 4017, 4417, 4657, 4686, 5379
BstSFI CTRYAG 6 cut(s) 267, 1561, 3899, 4332, 4647, 4811
BstSLI GKGCMC 3 cut(s) 305, 371, 1953
BstV2I GAAGAC 4 cut(s) 1902, 2718, 3518, 4896
BstX2I RGATCY 9 cut(s) 30, 427, 718, 986, 1223, 2117, 3602, 3937, 4034
BstXI CCANNNNNNTGG 1 cut(s) 2416
BstYI RGATCY 9 cut(s) 30, 427, 718, 986, 1223, 2117, 3602, 3937, 4034
Bsu36I CCTNAGG 1 cut(s) 1632
BsuI GTATCC 3 cut(s) 665, 922, 3445
BtrI CACGTC 2 cut(s) 163, 1617
BtsI GCAGTG 2 cut(s) 2727, 3789
CaiI CAGNNNCTG 1 cut(s) 5111
CciI TCATGA 2 cut(s) 175, 3067
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 2 cut(s) 793, 3806
CseI GACGC 5 cut(s) 897, 2466, 3698, 4393, 4700
Csp6I GTAC 7 cut(s) 615, 804, 1026, 2915, 3021, 3701, 5210
CspCI CAANNNNNGTGG 2 cut(s) 1344, 1379
CviQI GTAC 7 cut(s) 615, 804, 1026, 2915, 3021, 3701, 5210
DraI TTTAAA 2 cut(s) 2151, 2232
DraIII CACNNNGTG 2 cut(s) 215, 217
DrdI GACNNNNNNGTC 1 cut(s) 1333
DseDI GACNNNNNNGTC 1 cut(s) 1333
EaeI YGGCCR 3 cut(s) 536, 1237, 2131
EciI GGCGGA 1 cut(s) 4951
Ecl136II GAGCTC 1 cut(s) 4167
Eco130I CCWWGG 3 cut(s) 3184, 3666, 5117
Eco147I AGGCCT 1 cut(s) 77
Eco24I GRGCYC 4 cut(s) 1009, 1953, 4169, 4581
Eco32I GATATC 2 cut(s) 1098, 5284
Eco47I GGWCC 6 cut(s) 94, 1520, 2422, 3514, 3618, 3945
Eco53kI GAGCTC 1 cut(s) 4167
Eco81I CCTNAGG 1 cut(s) 1632
Eco88I CYCGRG 2 cut(s) 408, 3296
EcoICRI GAGCTC 1 cut(s) 4167
EcoO109I RGGNCCY 6 cut(s) 94, 1520, 1949, 3514, 4556, 4684
EcoRI GAATTC 2 cut(s) 604, 4376
EcoRII CCWGG 8 cut(s) 90, 898, 2370, 2788, 4417, 4657, 4686, 5379
EcoRV GATATC 2 cut(s) 1098, 5284
EcoT14I CCWWGG 3 cut(s) 3184, 3666, 5117
EcoT38I GRGCYC 4 cut(s) 1009, 1953, 4169, 4581
ErhI CCWWGG 3 cut(s) 3184, 3666, 5117
Esp3I CGTCTC 3 cut(s) 447, 738, 915
FalI AAGNNNNNCTT 2 cut(s) 3090, 3122
FaqI GGGAC 3 cut(s) 3631, 4405, 4682
FbaI TGATCA 4 cut(s) 1743, 1822, 2596, 3408
FblI GTMKAC 4 cut(s) 5, 2616, 2672, 2882
FriOI GRGCYC 4 cut(s) 1009, 1953, 4169, 4581
GlaI GCGC 1 cut(s) 391
GsaI CCCAGC 5 cut(s) 564, 855, 1421, 1548, 1956
GsuI CTGGAG 5 cut(s) 1802, 2889, 3633, 3836, 4709
HapII CCGG 5 cut(s) 120, 794, 3807, 4019, 4491
HgaI GACGC 5 cut(s) 897, 2466, 3698, 4393, 4700
HhaI GCGC 1 cut(s) 392
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 2 cut(s) 6, 2883
HindII GTYRAC 2 cut(s) 6, 2883
HindIII AAGCTT 1 cut(s) 5440
HpaII CCGG 5 cut(s) 120, 794, 3807, 4019, 4491
HphI GGTGA 6 cut(s) 1088, 1343, 1620, 2030, 3018, 4504
Hpy99I CGWCG 4 cut(s) 10, 164, 1451, 5321
HpyCH4IV ACGT 7 cut(s) 162, 440, 731, 768, 1616, 4738, 4969
HpySE526I ACGT 7 cut(s) 162, 440, 731, 768, 1616, 4738, 4969
HspAI GCGC 1 cut(s) 390
Ksp22I TGATCA 4 cut(s) 1743, 1822, 2596, 3408
LguI GCTCTTC 1 cut(s) 2467
MaeII ACGT 7 cut(s) 162, 440, 731, 768, 1616, 4738, 4969
MaeIII GTNAC 9 cut(s) 436, 694, 727, 2360, 2478, 2503, 2867, 4366, 4965
MbiI CCGCTC 1 cut(s) 2430
MfeI CAATTG 2 cut(s) 1554, 2392
MflI RGATCY 9 cut(s) 30, 427, 718, 986, 1223, 2117, 3602, 3937, 4034
MhlI GDGCHC 8 cut(s) 305, 371, 1009, 1953, 1984, 3652, 4169, 4581
MlsI TGGCCA 3 cut(s) 538, 1239, 2133
MluNI TGGCCA 3 cut(s) 538, 1239, 2133
MlyI GAGTC 8 cut(s) 477, 768, 773, 1576, 2231, 3244, 4387, 5030
MmeI TCCRAC 4 cut(s) 1829, 3494, 3938, 4785
Mox20I TGGCCA 3 cut(s) 538, 1239, 2133
MroXI GAANNNNTTC 4 cut(s) 3102, 4132, 4508, 5180
MscI TGGCCA 3 cut(s) 538, 1239, 2133
MslI CAYNNNNRTG 6 cut(s) 243, 843, 1590, 2487, 3258, 4676
Msp20I TGGCCA 3 cut(s) 538, 1239, 2133
MspA1I CMGCKG 2 cut(s) 4646, 5162
MspI CCGG 5 cut(s) 120, 794, 3807, 4019, 4491
MspR9I CCNGG 9 cut(s) 92, 900, 2372, 2790, 4019, 4419, 4659, 4688, 5381
MunI CAATTG 2 cut(s) 1554, 2392
Mva1269I GAATGC 3 cut(s) 643, 2000, 2972
MvaI CCWGG 8 cut(s) 92, 900, 2372, 2790, 4419, 4659, 4688, 5381
NciI CCSGG 1 cut(s) 4019
NlaIV GGNNCC 7 cut(s) 429, 720, 1951, 3516, 3619, 3779, 4578
NmuCI GTSAC 1 cut(s) 2478
NspI RCATGY 3 cut(s) 3659, 3844, 3935
NspV TTCGAA 1 cut(s) 1018
OliI CACNNNNGTG 1 cut(s) 843
PaeI GCATGC 1 cut(s) 3844
PaeR7I CTCGAG 1 cut(s) 408
PagI TCATGA 2 cut(s) 175, 3067
PceI AGGCCT 1 cut(s) 77
PciI ACATGT 1 cut(s) 3655
PciSI GCTCTTC 1 cut(s) 2467
PcsI WCGNNNNNNNCGW 2 cut(s) 211, 5325
PctI GAATGC 3 cut(s) 643, 2000, 2972
PdmI GAANNNNTTC 4 cut(s) 3102, 4132, 4508, 5180
PleI GAGTC 8 cut(s) 476, 767, 773, 1575, 2230, 3243, 4387, 5030
PpsI GAGTC 8 cut(s) 476, 767, 773, 1575, 2230, 3243, 4387, 5030
Ppu21I YACGTR 1 cut(s) 4970
PpuMI RGGWCCY 3 cut(s) 94, 1520, 3514
PscI ACATGT 1 cut(s) 3655
PshAI GACNNNNGTC 2 cut(s) 1395, 1680
PshBI ATTAAT 1 cut(s) 3221
PsiI TTATAA 1 cut(s) 3719
Psp124BI GAGCTC 1 cut(s) 4169
Psp5II RGGWCCY 3 cut(s) 94, 1520, 3514
Psp6I CCWGG 8 cut(s) 90, 898, 2370, 2788, 4417, 4657, 4686, 5379
PspFI CCCAGC 5 cut(s) 560, 851, 1417, 1544, 1952
PspGI CCWGG 8 cut(s) 90, 898, 2370, 2788, 4417, 4657, 4686, 5379
PspN4I GGNNCC 7 cut(s) 429, 720, 1951, 3516, 3619, 3779, 4578
PspOMI GGGCCC 1 cut(s) 1949
PspPPI RGGWCCY 3 cut(s) 94, 1520, 3514
PsrI GAACNNNNNNTAC 1 cut(s) 5445
PstI CTGCAG 3 cut(s) 4336, 4651, 4815
PstNI CAGNNNCTG 1 cut(s) 5111
PsuI RGATCY 9 cut(s) 30, 427, 718, 986, 1223, 2117, 3602, 3937, 4034
PvuII CAGCTG 2 cut(s) 4646, 5162
RsaI GTAC 7 cut(s) 616, 805, 1027, 2916, 3022, 3702, 5211
RsaNI GTAC 7 cut(s) 615, 804, 1026, 2915, 3021, 3701, 5210
RseI CAYNNNNRTG 6 cut(s) 243, 843, 1590, 2487, 3258, 4676
SacI GAGCTC 1 cut(s) 4169
SalI GTCGAC 2 cut(s) 4, 2881
SapI GCTCTTC 1 cut(s) 2467
SchI GAGTC 8 cut(s) 477, 768, 773, 1576, 2231, 3244, 4387, 5030
ScrFI CCNGG 9 cut(s) 92, 900, 2372, 2790, 4019, 4419, 4659, 4688, 5381
SduI GDGCHC 8 cut(s) 305, 371, 1009, 1953, 1984, 3652, 4169, 4581
SfcI CTRYAG 6 cut(s) 267, 1561, 3899, 4332, 4647, 4811
Sfr274I CTCGAG 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 1018
SinI GGWCC 6 cut(s) 94, 1520, 2422, 3514, 3618, 3945
SlaI CTCGAG 1 cut(s) 408
SmiMI CAYNNNNRTG 6 cut(s) 243, 843, 1590, 2487, 3258, 4676
SmlI CTYRAG 8 cut(s) 408, 699, 1429, 1767, 3091, 3400, 3446, 3704
SmoI CTYRAG 8 cut(s) 408, 699, 1429, 1767, 3091, 3400, 3446, 3704
SpeI ACTAGT 1 cut(s) 3677
SphI GCATGC 1 cut(s) 3844
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 4 cut(s) 2430, 3683, 4283, 4936
SspI AATATT 2 cut(s) 4594, 4606
SstI GAGCTC 1 cut(s) 4169
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 9 cut(s) 90, 898, 2370, 2788, 4017, 4417, 4657, 4686, 5379
StyI CCWWGG 3 cut(s) 3184, 3666, 5117
TaiI ACGT 7 cut(s) 165, 443, 734, 771, 1619, 4741, 4972
TatI WGTACW 3 cut(s) 1025, 2914, 3700
TseFI GTSAC 1 cut(s) 2478
Tsp45I GTSAC 1 cut(s) 2478
TspGWI ACGGA 4 cut(s) 320, 1683, 2543, 2711
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 6 cut(s) 94, 1520, 2422, 3514, 3618, 3945
VspI ATTAAT 1 cut(s) 3221
XapI RAATTY 8 cut(s) 604, 1172, 1958, 2066, 3179, 4057, 4376, 5348
XbaI TCTAGA 5 cut(s) 1226, 2120, 2468, 3433, 4357
XceI RCATGY 3 cut(s) 3659, 3844, 3935
XcmI CCANNNNNNNNNTGG 1 cut(s) 5009
XhoI CTCGAG 1 cut(s) 408
XmaJI CCTAGG 1 cut(s) 5117
XmiI GTMKAC 4 cut(s) 5, 2616, 2672, 2882
XmnI GAANNNNTTC 4 cut(s) 3102, 4132, 4508, 5180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.