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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 |
| fragaria_vesca | FvH4_7g06090 FvH4_7g06090 |
| malus_domestica | MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1 |
| prunus_persica | Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1 |
| pyrus_communis | pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330 |
| rosa_chinensis | RchiOBHm_Chr1g0333641 |
| rosa_laevigata | RLG00000029543 |
| rosa_multiflora | Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00317360 |
| rosa_rugosa | Rorug01G0110700 Rorug01G0110800 |
| rosa_samantha | Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500 |
| rosa_wichuraiana | Rw0G003340 Rw1G011110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1343 |
| AccB1I | GGYRCC | 1 cut(s) | 3316 |
| AccI | GTMKAC | 4 cut(s) | 240, 296, 506, 2962 |
| AciI | CCGC | 3 cut(s) | 1307, 1907, 2563 |
| AclWI | GGATC | 3 cut(s) | 1653, 2735, 3218 |
| AcsI | RAATTY | 4 cut(s) | 1681, 2003, 2975, 3194 |
| AcuI | CTGAAG | 8 cut(s) | 690, 1142, 1395, 1929, 2111, 2346, 2794, 3105 |
| AcyI | GRCGYC | 1 cut(s) | 3317 |
| AfaI | GTAC | 4 cut(s) | 540, 646, 1326, 2838 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1202, 2286, 3013 |
| AflII | CTTAAG | 1 cut(s) | 3239 |
| AflIII | ACRYGT | 1 cut(s) | 1279 |
| AhlI | ACTAGT | 1 cut(s) | 1301 |
| AjnI | CCWGG | 6 cut(s) | 264, 412, 2044, 2284, 2313, 3006 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 610, 642 |
| AleI | CACNNNNGTG | 1 cut(s) | 3249 |
| Alw21I | GWGCWC | 2 cut(s) | 1276, 1793 |
| Alw26I | GTCTC | 3 cut(s) | 2312, 2729, 3272 |
| AlwI | GGATC | 3 cut(s) | 1653, 2735, 3218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2738 |
| Ama87I | CYCGRG | 2 cut(s) | 920, 3296 |
| AoxI | GGCC | 7 cut(s) | 410, 1193, 1639, 1644, 1901, 2182, 2310 |
| ApoI | RAATTY | 4 cut(s) | 1681, 2003, 2975, 3194 |
| AseI | ATTAAT | 1 cut(s) | 845 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 726, 1756, 2135, 2807 |
| AspA2I | CCTAGG | 1 cut(s) | 2744 |
| AspLEI | GCGC | 1 cut(s) | 3319 |
| AspS9I | GGNCC | 7 cut(s) | 46, 410, 1138, 1569, 1640, 2183, 2311 |
| AsuC2I | CCSGG | 2 cut(s) | 1643, 2119 |
| AsuHPI | GGTGA | 2 cut(s) | 642, 2131 |
| AvaI | CYCGRG | 2 cut(s) | 920, 3296 |
| AvaII | GGWCC | 3 cut(s) | 46, 1138, 1569 |
| AvrII | CCTAGG | 1 cut(s) | 2744 |
| BanI | GGYRCC | 1 cut(s) | 3316 |
| BanII | GRGCYC | 2 cut(s) | 1793, 2208 |
| BbsI | GAAGAC | 3 cut(s) | 342, 1142, 2523 |
| Bbv12I | GWGCWC | 2 cut(s) | 1276, 1793 |
| BbvCI | CCTCAGC | 2 cut(s) | 485, 3273 |
| BccI | CCATC | 7 cut(s) | 242, 830, 1604, 1856, 2633, 3108, 3243 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2873, 2907 |
| BciT130I | CCWGG | 6 cut(s) | 266, 414, 2046, 2286, 2315, 3008 |
| BclI | TGATCA | 2 cut(s) | 220, 1032 |
| BcnI | CCSGG | 2 cut(s) | 1643, 2119 |
| BcoDI | GTCTC | 3 cut(s) | 2312, 2729, 3272 |
| BcuI | ACTAGT | 1 cut(s) | 1301 |
| BfmI | CTRYAG | 4 cut(s) | 1523, 1959, 2274, 2438 |
| BfoI | RGCGCY | 1 cut(s) | 3320 |
| BfrI | CTTAAG | 1 cut(s) | 3239 |
| BglII | AGATCT | 2 cut(s) | 1226, 1561 |
| BlnI | CCTAGG | 1 cut(s) | 2744 |
| Bme1390I | CCNGG | 8 cut(s) | 266, 414, 1643, 2046, 2119, 2286, 2315, 3008 |
| Bme18I | GGWCC | 3 cut(s) | 46, 1138, 1569 |
| BmeT110I | CYCGRG | 2 cut(s) | 920, 3296 |
| BmgT120I | GGNCC | 7 cut(s) | 46, 410, 1138, 1569, 1640, 2183, 2311 |
| BmiI | GGNNCC | 4 cut(s) | 1140, 1403, 2205, 3318 |
| BmrFI | CCNGG | 8 cut(s) | 266, 414, 1643, 2046, 2119, 2286, 2315, 3008 |
| BmrI | ACTGGG | 2 cut(s) | 253, 1551 |
| BmsI | GCATC | 6 cut(s) | 133, 145, 424, 1022, 1066, 2535 |
| BmuI | ACTGGG | 2 cut(s) | 253, 1551 |
| BpiI | GAAGAC | 3 cut(s) | 342, 1142, 2523 |
| BpmI | CTGGAG | 4 cut(s) | 513, 1257, 1460, 2336 |
| Bpu10I | CCTNAGC | 2 cut(s) | 485, 3273 |
| BpuEI | CTTGAG | 5 cut(s) | 736, 792, 1009, 1091, 1349 |
| BpuMI | CCSGG | 2 cut(s) | 1643, 2119 |
| Bsa29I | ATCGAT | 1 cut(s) | 3103 |
| BsaAI | YACGTR | 2 cut(s) | 2597, 3323 |
| BsaHI | GRCGYC | 1 cut(s) | 3317 |
| BsaJI | CCNNGG | 6 cut(s) | 921, 1290, 2285, 2313, 2744, 3090 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 538, 568, 2740, 2770 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1202, 2286, 3013 |
| Bse118I | RCCGGY | 1 cut(s) | 1430 |
| Bse1I | ACTGG | 5 cut(s) | 248, 552, 1546, 2166, 2634 |
| Bse3DI | GCAATG | 2 cut(s) | 1323, 1368 |
| BseBI | CCWGG | 6 cut(s) | 266, 414, 2046, 2286, 2315, 3008 |
| BseCI | ATCGAT | 1 cut(s) | 3103 |
| BseDI | CCNNGG | 6 cut(s) | 921, 1290, 2285, 2313, 2744, 3090 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1202, 2286, 3013 |
| BseMI | GCAATG | 2 cut(s) | 1323, 1368 |
| BseMII | CTCAG | 6 cut(s) | 476, 515, 839, 1556, 2414, 3264 |
| BseNI | ACTGG | 5 cut(s) | 248, 552, 1546, 2166, 2634 |
| BseRI | GAGGAG | 3 cut(s) | 92, 502, 2474 |
| BsgI | GTGCAG | 3 cut(s) | 363, 2619, 2903 |
| BshFI | GGCC | 7 cut(s) | 412, 1195, 1641, 1646, 1903, 2184, 2312 |
| BshNI | GGYRCC | 1 cut(s) | 3316 |
| BshVI | ATCGAT | 1 cut(s) | 3103 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1276, 1793 |
| BsiHKCI | CYCGRG | 2 cut(s) | 920, 3296 |
| BsiSI | CCGG | 3 cut(s) | 1431, 1643, 2118 |
| BslFI | GGGAC | 2 cut(s) | 2032, 2309 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1202, 2286, 3013 |
| BsmAI | GTCTC | 3 cut(s) | 2312, 2729, 3272 |
| BsmFI | GGGAC | 2 cut(s) | 2032, 2309 |
| BsmI | GAATGC | 1 cut(s) | 596 |
| BsnI | GGCC | 7 cut(s) | 412, 1195, 1641, 1646, 1903, 2184, 2312 |
| BsoBI | CYCGRG | 2 cut(s) | 920, 3296 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1276, 1793, 2208 |
| Bsp1407I | TGTACA | 1 cut(s) | 538 |
| Bsp143I | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| BspACI | CCGC | 3 cut(s) | 1307, 1907, 2563 |
| BspANI | GGCC | 7 cut(s) | 412, 1195, 1641, 1646, 1903, 2184, 2312 |
| BspCNI | CTCAG | 6 cut(s) | 477, 514, 838, 1557, 2415, 3265 |
| BspDI | ATCGAT | 1 cut(s) | 3103 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 4 cut(s) | 1140, 1403, 2205, 3318 |
| BspMAI | CTGCAG | 3 cut(s) | 1963, 2278, 2442 |
| BspPI | GGATC | 3 cut(s) | 1653, 2735, 3218 |
| BspT107I | GGYRCC | 1 cut(s) | 3316 |
| BspTI | CTTAAG | 1 cut(s) | 3239 |
| BsrDI | GCAATG | 2 cut(s) | 1323, 1368 |
| BsrFI | RCCGGY | 1 cut(s) | 1430 |
| BsrGI | TGTACA | 1 cut(s) | 538 |
| BsrI | ACTGG | 5 cut(s) | 248, 552, 1546, 2166, 2634 |
| BssAI | RCCGGY | 1 cut(s) | 1430 |
| BssECI | CCNNGG | 6 cut(s) | 921, 1290, 2285, 2313, 2744, 3090 |
| BssMI | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| BssNAI | GTATAC | 1 cut(s) | 2963 |
| BssNI | GRCGYC | 1 cut(s) | 3317 |
| BssT1I | CCWWGG | 2 cut(s) | 1290, 2744 |
| Bst1107I | GTATAC | 1 cut(s) | 2963 |
| Bst2UI | CCWGG | 6 cut(s) | 266, 414, 2046, 2286, 2315, 3008 |
| Bst4CI | ACNGT | 6 cut(s) | 341, 511, 785, 1213, 2680, 2901 |
| Bst6I | CTCTTC | 9 cut(s) | 69, 717, 1371, 2285, 2451, 2492, 2793, 2826, 3135 |
| BstACI | GRCGYC | 1 cut(s) | 3317 |
| BstAFI | CTTAAG | 1 cut(s) | 3239 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2771, 3003 |
| BstAUI | TGTACA | 1 cut(s) | 538 |
| BstBAI | YACGTR | 2 cut(s) | 2597, 3323 |
| BstC8I | GCNNGC | 9 cut(s) | 1041, 1218, 1428, 1462, 1466, 1806, 1911, 2400, 2995 |
| BstDEI | CTNAG | 7 cut(s) | 485, 501, 825, 1565, 2423, 2720, 3273 |
| BstDSI | CCRYGG | 1 cut(s) | 3090 |
| BstH2I | RGCGCY | 1 cut(s) | 3320 |
| BstHHI | GCGC | 1 cut(s) | 3319 |
| BstKTI | GATC | 9 cut(s) | 120, 223, 1035, 1229, 1564, 1661, 2743, 3213, 3340 |
| BstMAI | GTCTC | 3 cut(s) | 2312, 2729, 3272 |
| BstMBI | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| BstNI | CCWGG | 6 cut(s) | 266, 414, 2046, 2286, 2315, 3008 |
| BstNSI | RCATGY | 4 cut(s) | 1283, 1468, 1559, 3290 |
| BstSCI | CCNGG | 8 cut(s) | 264, 412, 1641, 2044, 2117, 2284, 2313, 3006 |
| BstSFI | CTRYAG | 4 cut(s) | 1523, 1959, 2274, 2438 |
| BstV2I | GAAGAC | 3 cut(s) | 342, 1142, 2523 |
| BstX2I | RGATCY | 3 cut(s) | 1226, 1561, 1658 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 40, 3291 |
| BstYI | RGATCY | 3 cut(s) | 1226, 1561, 1658 |
| BstZ17I | GTATAC | 1 cut(s) | 2963 |
| Bsu15I | ATCGAT | 1 cut(s) | 3103 |
| BsuRI | GGCC | 7 cut(s) | 412, 1195, 1641, 1646, 1903, 2184, 2312 |
| BsuTUI | ATCGAT | 1 cut(s) | 3103 |
| BtgI | CCRYGG | 1 cut(s) | 3090 |
| BtsI | GCAGTG | 2 cut(s) | 351, 1413 |
| BtsIMutI | CAGTG | 6 cut(s) | 351, 559, 1413, 1968, 2641, 3220 |
| Cac8I | GCNNGC | 9 cut(s) | 1041, 1218, 1428, 1462, 1466, 1806, 1911, 2400, 2995 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2738 |
| CciI | TCATGA | 1 cut(s) | 691 |
| CfoI | GCGC | 1 cut(s) | 3319 |
| Cfr10I | RCCGGY | 1 cut(s) | 1430 |
| Cfr13I | GGNCC | 7 cut(s) | 46, 410, 1138, 1569, 1640, 2183, 2311 |
| ClaI | ATCGAT | 1 cut(s) | 3103 |
| CseI | GACGC | 4 cut(s) | 90, 1322, 2020, 2327 |
| Csp6I | GTAC | 4 cut(s) | 539, 645, 1325, 2837 |
| CviQI | GTAC | 4 cut(s) | 539, 645, 1325, 2837 |
| DdeI | CTNAG | 7 cut(s) | 485, 501, 825, 1565, 2423, 2720, 3273 |
| DinI | GGCGCC | 1 cut(s) | 3318 |
| DpnI | GATC | 9 cut(s) | 119, 222, 1034, 1228, 1563, 1660, 2742, 3212, 3339 |
| DpnII | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| Eam1104I | CTCTTC | 9 cut(s) | 69, 717, 1371, 2285, 2451, 2492, 2793, 2826, 3135 |
| EarI | CTCTTC | 9 cut(s) | 69, 717, 1371, 2285, 2451, 2492, 2793, 2826, 3135 |
| EciI | GGCGGA | 1 cut(s) | 2578 |
| Ecl136II | GAGCTC | 1 cut(s) | 1791 |
| Eco130I | CCWWGG | 2 cut(s) | 1290, 2744 |
| Eco24I | GRGCYC | 2 cut(s) | 1793, 2208 |
| Eco32I | GATATC | 1 cut(s) | 2911 |
| Eco47I | GGWCC | 3 cut(s) | 46, 1138, 1569 |
| Eco53kI | GAGCTC | 1 cut(s) | 1791 |
| Eco57I | CTGAAG | 8 cut(s) | 690, 1142, 1395, 1929, 2111, 2346, 2794, 3105 |
| Eco88I | CYCGRG | 2 cut(s) | 920, 3296 |
| EcoICRI | GAGCTC | 1 cut(s) | 1791 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1138, 2183, 2311 |
| EcoRI | GAATTC | 1 cut(s) | 2003 |
| EcoRII | CCWGG | 6 cut(s) | 264, 412, 2044, 2284, 2313, 3006 |
| EcoRV | GATATC | 1 cut(s) | 2911 |
| EcoT14I | CCWWGG | 2 cut(s) | 1290, 2744 |
| EcoT22I | ATGCAT | 1 cut(s) | 3292 |
| EcoT38I | GRGCYC | 2 cut(s) | 1793, 2208 |
| EgeI | GGCGCC | 1 cut(s) | 3318 |
| EheI | GGCGCC | 1 cut(s) | 3318 |
| ErhI | CCWWGG | 2 cut(s) | 1290, 2744 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 714, 746 |
| FaqI | GGGAC | 2 cut(s) | 2032, 2309 |
| FbaI | TGATCA | 2 cut(s) | 220, 1032 |
| FblI | GTMKAC | 4 cut(s) | 240, 296, 506, 2962 |
| FriOI | GRGCYC | 2 cut(s) | 1793, 2208 |
| GlaI | GCGC | 1 cut(s) | 3318 |
| GsuI | CTGGAG | 4 cut(s) | 513, 1257, 1460, 2336 |
| HaeII | RGCGCY | 1 cut(s) | 3320 |
| HaeIII | GGCC | 7 cut(s) | 412, 1195, 1641, 1646, 1903, 2184, 2312 |
| HapII | CCGG | 3 cut(s) | 1431, 1643, 2118 |
| HgaI | GACGC | 4 cut(s) | 90, 1322, 2020, 2327 |
| HhaI | GCGC | 1 cut(s) | 3319 |
| Hin1I | GRCGYC | 1 cut(s) | 3317 |
| Hin6I | GCGC | 1 cut(s) | 3317 |
| HinP1I | GCGC | 1 cut(s) | 3317 |
| HincII | GTYRAC | 1 cut(s) | 507 |
| HindII | GTYRAC | 1 cut(s) | 507 |
| HindIII | AAGCTT | 1 cut(s) | 3067 |
| HpaII | CCGG | 3 cut(s) | 1431, 1643, 2118 |
| HphI | GGTGA | 2 cut(s) | 642, 2131 |
| Hpy166II | GTNNAC | 5 cut(s) | 241, 297, 507, 2139, 2963 |
| Hpy8I | GTNNAC | 5 cut(s) | 241, 297, 507, 2139, 2963 |
| Hpy99I | CGWCG | 1 cut(s) | 2948 |
| HpyAV | CCTTC | 9 cut(s) | 950, 1415, 1946, 2302, 2383, 2504, 2552, 2797, 2994 |
| HpyCH4III | ACNGT | 6 cut(s) | 341, 511, 785, 1213, 2680, 2901 |
| HpyCH4IV | ACGT | 3 cut(s) | 2365, 2596, 3322 |
| HpyF3I | CTNAG | 7 cut(s) | 485, 501, 825, 1565, 2423, 2720, 3273 |
| HpySE526I | ACGT | 3 cut(s) | 2365, 2596, 3322 |
| Hsp92I | GRCGYC | 1 cut(s) | 3317 |
| HspAI | GCGC | 1 cut(s) | 3317 |
| KasI | GGCGCC | 1 cut(s) | 3316 |
| Ksp22I | TGATCA | 2 cut(s) | 220, 1032 |
| Kzo9I | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| LweI | GCATC | 6 cut(s) | 133, 145, 424, 1022, 1066, 2535 |
| MaeII | ACGT | 3 cut(s) | 2365, 2596, 3322 |
| MaeIII | GTNAC | 5 cut(s) | 102, 491, 2121, 2213, 2592 |
| MalI | GATC | 9 cut(s) | 119, 222, 1034, 1228, 1563, 1660, 2742, 3212, 3339 |
| MboI | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| MfeI | CAATTG | 1 cut(s) | 16 |
| MflI | RGATCY | 3 cut(s) | 1226, 1561, 1658 |
| MhlI | GDGCHC | 3 cut(s) | 1276, 1793, 2208 |
| Mly113I | GGCGCC | 1 cut(s) | 3317 |
| MlyI | GAGTC | 4 cut(s) | 868, 2014, 2657, 3274 |
| MmeI | TCCRAC | 3 cut(s) | 1118, 1562, 2412 |
| Mph1103I | ATGCAT | 1 cut(s) | 3292 |
| MroXI | GAANNNNTTC | 4 cut(s) | 726, 1756, 2135, 2807 |
| MslI | CAYNNNNRTG | 5 cut(s) | 111, 882, 2303, 3249, 3289 |
| MspA1I | CMGCKG | 2 cut(s) | 2273, 2789 |
| MspCI | CTTAAG | 1 cut(s) | 3239 |
| MspI | CCGG | 3 cut(s) | 1431, 1643, 2118 |
| MspR9I | CCNGG | 8 cut(s) | 266, 414, 1643, 2046, 2119, 2286, 2315, 3008 |
| MunI | CAATTG | 1 cut(s) | 16 |
| Mva1269I | GAATGC | 1 cut(s) | 596 |
| MvaI | CCWGG | 6 cut(s) | 266, 414, 2046, 2286, 2315, 3008 |
| NarI | GGCGCC | 1 cut(s) | 3317 |
| NciI | CCSGG | 2 cut(s) | 1643, 2119 |
| NdeII | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| NlaIV | GGNNCC | 4 cut(s) | 1140, 1403, 2205, 3318 |
| NmuCI | GTSAC | 2 cut(s) | 102, 2121 |
| NsiI | ATGCAT | 1 cut(s) | 3292 |
| NspI | RCATGY | 4 cut(s) | 1283, 1468, 1559, 3290 |
| OliI | CACNNNNGTG | 1 cut(s) | 3249 |
| PaeI | GCATGC | 1 cut(s) | 1468 |
| PaeR7I | CTCGAG | 1 cut(s) | 3296 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PciI | ACATGT | 1 cut(s) | 1279 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2952 |
| PctI | GAATGC | 1 cut(s) | 596 |
| PdmI | GAANNNNTTC | 4 cut(s) | 726, 1756, 2135, 2807 |
| PleI | GAGTC | 4 cut(s) | 867, 2014, 2657, 3273 |
| PluTI | GGCGCC | 1 cut(s) | 3320 |
| PpsI | GAGTC | 4 cut(s) | 867, 2014, 2657, 3273 |
| Ppu21I | YACGTR | 2 cut(s) | 2597, 3323 |
| PpuMI | RGGWCCY | 1 cut(s) | 1138 |
| PscI | ACATGT | 1 cut(s) | 1279 |
| PshBI | ATTAAT | 1 cut(s) | 845 |
| PsiI | TTATAA | 1 cut(s) | 1343 |
| Psp124BI | GAGCTC | 1 cut(s) | 1793 |
| Psp5II | RGGWCCY | 1 cut(s) | 1138 |
| Psp6I | CCWGG | 6 cut(s) | 264, 412, 2044, 2284, 2313, 3006 |
| PspGI | CCWGG | 6 cut(s) | 264, 412, 2044, 2284, 2313, 3006 |
| PspN4I | GGNNCC | 4 cut(s) | 1140, 1403, 2205, 3318 |
| PspPI | GGNCC | 7 cut(s) | 46, 410, 1138, 1569, 1640, 2183, 2311 |
| PspPPI | RGGWCCY | 1 cut(s) | 1138 |
| PspXI | VCTCGAGB | 1 cut(s) | 3296 |
| PstI | CTGCAG | 3 cut(s) | 1963, 2278, 2442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2738 |
| PsuI | RGATCY | 3 cut(s) | 1226, 1561, 1658 |
| PvuII | CAGCTG | 2 cut(s) | 2273, 2789 |
| RsaI | GTAC | 4 cut(s) | 540, 646, 1326, 2838 |
| RsaNI | GTAC | 4 cut(s) | 539, 645, 1325, 2837 |
| RseI | CAYNNNNRTG | 5 cut(s) | 111, 882, 2303, 3249, 3289 |
| SacI | GAGCTC | 1 cut(s) | 1793 |
| SalI | GTCGAC | 1 cut(s) | 505 |
| Sau3AI | GATC | 9 cut(s) | 117, 220, 1032, 1226, 1561, 1658, 2740, 3210, 3337 |
| Sau96I | GGNCC | 7 cut(s) | 46, 410, 1138, 1569, 1640, 2183, 2311 |
| SchI | GAGTC | 4 cut(s) | 868, 2014, 2657, 3274 |
| ScrFI | CCNGG | 8 cut(s) | 266, 414, 1643, 2046, 2119, 2286, 2315, 3008 |
| SduI | GDGCHC | 3 cut(s) | 1276, 1793, 2208 |
| SfaNI | GCATC | 6 cut(s) | 133, 145, 424, 1022, 1066, 2535 |
| SfcI | CTRYAG | 4 cut(s) | 1523, 1959, 2274, 2438 |
| SfoI | GGCGCC | 1 cut(s) | 3318 |
| Sfr274I | CTCGAG | 1 cut(s) | 3296 |
| SinI | GGWCC | 3 cut(s) | 46, 1138, 1569 |
| SlaI | CTCGAG | 1 cut(s) | 3296 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 111, 882, 2303, 3249, 3289 |
| SmlI | CTYRAG | 7 cut(s) | 715, 807, 1024, 1070, 1328, 3239, 3296 |
| SmoI | CTYRAG | 7 cut(s) | 715, 807, 1024, 1070, 1328, 3239, 3296 |
| SpeI | ACTAGT | 1 cut(s) | 1301 |
| SphI | GCATGC | 1 cut(s) | 1468 |
| SsiI | CCGC | 3 cut(s) | 1307, 1907, 2563 |
| SspDI | GGCGCC | 1 cut(s) | 3316 |
| SspI | AATATT | 2 cut(s) | 2221, 2233 |
| SstI | GAGCTC | 1 cut(s) | 1793 |
| StyD4I | CCNGG | 8 cut(s) | 264, 412, 1641, 2044, 2117, 2284, 2313, 3006 |
| StyI | CCWWGG | 2 cut(s) | 1290, 2744 |
| TaaI | ACNGT | 6 cut(s) | 341, 511, 785, 1213, 2680, 2901 |
| TaiI | ACGT | 3 cut(s) | 2368, 2599, 3325 |
| TaqI | TCGA | 5 cut(s) | 506, 2893, 3103, 3297, 3336 |
| TatI | WGTACW | 2 cut(s) | 538, 1324 |
| TscAI | CASTG | 6 cut(s) | 351, 559, 1420, 1975, 2641, 3220 |
| TseFI | GTSAC | 2 cut(s) | 102, 2121 |
| Tsp45I | GTSAC | 2 cut(s) | 102, 2121 |
| TspGWI | ACGGA | 2 cut(s) | 167, 3107 |
| TspRI | CASTG | 6 cut(s) | 351, 559, 1420, 1975, 2641, 3220 |
| Vha464I | CTTAAG | 1 cut(s) | 3239 |
| VpaK11BI | GGWCC | 3 cut(s) | 46, 1138, 1569 |
| VspI | ATTAAT | 1 cut(s) | 845 |
| XapI | RAATTY | 4 cut(s) | 1681, 2003, 2975, 3194 |
| XbaI | TCTAGA | 3 cut(s) | 92, 1057, 1984 |
| XceI | RCATGY | 4 cut(s) | 1283, 1468, 1559, 3290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2636 |
| XhoI | CTCGAG | 1 cut(s) | 3296 |
| XmaJI | CCTAGG | 1 cut(s) | 2744 |
| XmiI | GTMKAC | 4 cut(s) | 240, 296, 506, 2962 |
| XmnI | GAANNNNTTC | 4 cut(s) | 726, 1756, 2135, 2807 |
| Zsp2I | ATGCAT | 1 cut(s) | 3292 |