Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002394

Physical Location & Seq

Genomic Coordinates Forward (+)

1641594 .. 1654360

Gene Structure 12767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATATCATCACATCTTCCCTGCATTAGTGAAGAAAATGAGAATGCAGATGAGGCAGCTGATACTTTCCAAGATGAAAGTGTTTCAAATGCATTAGATAGGTCAATACAAAGACTACCACTTGCTGACATTACTGAGATTCCAAACCCTCCTGCATCATCCGTGAACACTGAATTGAGCTTAACAGATACTCATAAGAGCTTCACACAGAGGCTTGGAATCCAAAACAGCAGCAAGAGAAGATATAACAATAAGGAGAACCTGAGCATGTCACGAGGAACAAACGATATTAAGAGGACCACTGGATCACTTCATAACAGGTTCAGTAAACCAAAATTATCTGGAAAAACCAGTTTGAGAAAAGGTGGTTCAAGTTTATCAGAGCAGGAGCCGAAGCGTAACAATATTGTGTCCAGTAAGACTTCTTTCATTCCACTTGTTCAACAGAAACAAGCAGCTGCAGTTGTAACAGGGAAGAGGGACGTCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTGCAAGGCGTCAGGCAGAAAAGGAAGAGAATGAACGCAAGATGAAGAAGGAAGCCTTGAAACTTCAGCGGTCAAGAATGGAGCAGGAGAATATGAAGCAGTTGGAGTTGCAGAAGAAAATGAAAGACGAGGGGAAGAAAAAAGAGGCAGATATGGCATCAAAGAATAGACAAAGGGAAGAGGAAGAAAGGAAGGAGAAGGAAACAAAAAGAATGCGTATTGAAGCACGTAGAAACAAGAGAGAACATGAAGACAAGTTACCTGCAGAAAAGGATGGAAGAGGCCATGGGAGTAAGGAATCTAAGGATGAAATGGCAAATAACAAAATGGAGGAAGAAAGAGGTTATGACAATAACAGAAATATTTCGGAGACTAAGCCTAGTACTTCCAGGATTTCAATAAGCAATGCCGGAAGAGAAAGTATTGTCCACGAAGAGTTCCACGAGGCCTCGAGTAATTATGGATATAAAGCAGAGGTACTAAGCAATTCAGACAGAGCAATGAAAAATTCAGTTACCATTACAAGTCAAGAACAGTCTTATGACATCTCTCCGTACAAAGAATCAGATGATGAAAATGACGATGACGACAGTATCATACCTAATAGCAAATTTATTCCTTCGTGGTCAAGGTATTTTTTTTCATTTGTTGTTATAGATGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

INCENP_ARK-bind

Protein Analysis

394

Amino Acids

44.9

Weight (kDa)

8.29

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820 AT5G55820
fragaria_vesca	FvH4_7g06090 FvH4_7g06090
malus_domestica	MD00G1168200.v1.1 MD00G1168400.v1.1 MD03G1024600.v1.1 MD03G1025200.v1.1 MD03G1025800.v1.1 MD11G1029700.v1.1 MD11G1030200.v1.1
prunus_persica	Prupe.5G032900_v2.0.a1 Prupe.5G032900_v2.0.a1 Prupe.7G022200_v2.0.a1
pyrus_communis	pycom03g02140 pycom03g02150 pycom11g02320 pycom11g02330
rosa_chinensis	RchiOBHm_Chr1g0333641
rosa_laevigata	RLG00000029543
rosa_multiflora	Rmu_sc0002955.1_g000032 Rmu_sc0004487.1_g000019 Rmu_sc0004487.1_g000020 Rmu_sc0038804.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317360
rosa_rugosa	Rorug01G0110700 Rorug01G0110800
rosa_samantha	Rh1AG133300 Rh1BG102000 Rh1CG127500 Rh1DG139500
rosa_wichuraiana	Rw0G003340 Rw1G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	784
AciI	CCGC	1 cut(s)	583
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	1021, 1124
AcuI	CTGAAG	2 cut(s)	531, 563
AcyI	GRCGYC	2 cut(s)	483, 523
AfaI	GTAC	3 cut(s)	898, 993, 1070
AgsI	TTSAA	6 cut(s)	87, 372, 443, 574, 737, 912
AjnI	CCWGG	2 cut(s)	498, 902
AluBI	AGCT	6 cut(s)	59, 180, 201, 458, 509, 515
AluI	AGCT	6 cut(s)	59, 180, 201, 458, 509, 515
Alw26I	GTCTC	1 cut(s)	878
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	3 cut(s)	495, 796, 960
ApeKI	GCWGC	6 cut(s)	56, 231, 455, 458, 506, 515
ApoI	RAATTY	2 cut(s)	1021, 1124
Asp700I	GAANNNNTTC	1 cut(s)	877
AspS9I	GGNCC	2 cut(s)	297, 496
AvaI	CYCGRG	1 cut(s)	964
AvaII	GGWCC	1 cut(s)	297
BaeI	ACNNNNGTAYC	2 cut(s)	1090, 1123
BarI	GAAGNNNNNNTAC	2 cut(s)	756, 788
BauI	CACGAG	2 cut(s)	273, 956
BbsI	GAAGAC	1 cut(s)	771
BbvI	GCAGC	6 cut(s)	68, 243, 445, 467, 502, 518
BccI	CCATC	1 cut(s)	782
BciT130I	CCWGG	2 cut(s)	500, 904
BcoDI	GTCTC	1 cut(s)	878
BfaI	CTAG	1 cut(s)	894
BfmI	CTRYAG	2 cut(s)	459, 777
BfuAI	ACCTGC	1 cut(s)	784
BglI	GCCNNNNNGGC	1 cut(s)	503
BisI	GCNGC	6 cut(s)	57, 232, 456, 459, 507, 516
BlsI	GCNGC	6 cut(s)	58, 233, 457, 460, 508, 517
BmcAI	AGTACT	1 cut(s)	898
Bme1390I	CCNGG	2 cut(s)	500, 904
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	964
BmgT120I	GGNCC	2 cut(s)	297, 496
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	500, 904
BmsI	GCATC	2 cut(s)	164, 680
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	743
BsaHI	GRCGYC	2 cut(s)	483, 523
BsaJI	CCNNGG	2 cut(s)	498, 799
Bse1I	ACTGG	3 cut(s)	307, 351, 414
Bse3DI	GCAATG	2 cut(s)	925, 1020
BseBI	CCWGG	2 cut(s)	500, 904
BseDI	CCNNGG	2 cut(s)	498, 799
BseGI	GGATG	3 cut(s)	158, 793, 826
BseMI	GCAATG	2 cut(s)	925, 1020
BseMII	CTCAG	2 cut(s)	126, 254
BseNI	ACTGG	3 cut(s)	307, 351, 414
BseXI	GCAGC	6 cut(s)	68, 243, 445, 467, 502, 518
BshFI	GGCC	3 cut(s)	497, 798, 962
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	2 cut(s)	49, 732
BsnI	GGCC	3 cut(s)	497, 798, 962
BsoBI	CYCGRG	1 cut(s)	964
Bsp143I	GATC	1 cut(s)	305
Bsp19I	CCATGG	1 cut(s)	799
BspACI	CCGC	1 cut(s)	583
BspANI	GGCC	3 cut(s)	497, 798, 962
BspCNI	CTCAG	2 cut(s)	127, 255
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	2 cut(s)	463, 781
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	925, 1020
BsrI	ACTGG	3 cut(s)	307, 351, 414
BssECI	CCNNGG	2 cut(s)	498, 799
BssMI	GATC	1 cut(s)	305
BssNI	GRCGYC	2 cut(s)	483, 523
BssSI	CACGAG	2 cut(s)	273, 956
BssT1I	CCWWGG	1 cut(s)	799
Bst2BI	CACGAG	2 cut(s)	273, 956
Bst2UI	CCWGG	2 cut(s)	500, 904
Bst4CI	ACNGT	2 cut(s)	1050, 1106
Bst6I	CTCTTC	6 cut(s)	470, 534, 687, 787, 922, 942
BstACI	GRCGYC	2 cut(s)	483, 523
BstBAI	YACGTR	1 cut(s)	743
BstDEI	CTNAG	5 cut(s)	135, 263, 816, 888, 995
BstDSI	CCRYGG	1 cut(s)	799
BstF5I	GGATG	3 cut(s)	158, 793, 826
BstKTI	GATC	1 cut(s)	308
BstMAI	GTCTC	1 cut(s)	878
BstMBI	GATC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 503, 512, 515, 668
BstNI	CCWGG	2 cut(s)	500, 904
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	498, 902
BstSFI	CTRYAG	2 cut(s)	459, 777
BstV1I	GCAGC	6 cut(s)	68, 243, 445, 467, 502, 518
BstV2I	GAAGAC	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	497, 798, 962
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	3 cut(s)	158, 793, 826
BtsIMutI	CAGTG	2 cut(s)	168, 300
BveI	ACCTGC	1 cut(s)	784
Cfr13I	GGNCC	2 cut(s)	297, 496
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	897, 992, 1069
CviAII	CATG	3 cut(s)	268, 761, 800
CviQI	GTAC	3 cut(s)	897, 992, 1069
DdeI	CTNAG	5 cut(s)	135, 263, 816, 888, 995
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
Eam1104I	CTCTTC	6 cut(s)	470, 534, 687, 787, 922, 942
EarI	CTCTTC	6 cut(s)	470, 534, 687, 787, 922, 942
Eco130I	CCWWGG	1 cut(s)	799
Eco147I	AGGCCT	1 cut(s)	962
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	531, 563
Eco88I	CYCGRG	1 cut(s)	964
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	498, 902
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	799
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	799
FaeI	CATG	3 cut(s)	271, 764, 803
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	3 cut(s)	267, 760, 799
Fnu4HI	GCNGC	6 cut(s)	57, 232, 456, 459, 507, 516
FokI	GGATG	3 cut(s)	145, 800, 833
Fsp4HI	GCNGC	6 cut(s)	57, 232, 456, 459, 507, 516
FspBI	CTAG	1 cut(s)	894
GluI	GCNGC	6 cut(s)	57, 232, 456, 459, 507, 516
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	3 cut(s)	497, 798, 962
HapII	CCGG	1 cut(s)	924
HgaI	GACGC	1 cut(s)	512
Hin1I	GRCGYC	2 cut(s)	483, 523
Hin1II	CATG	3 cut(s)	271, 764, 803
HinfI	GANTC	4 cut(s)	139, 219, 812, 1076
HpaII	CCGG	1 cut(s)	924
Hpy166II	GTNNAC	3 cut(s)	166, 329, 943
Hpy188I	TCNGA	4 cut(s)	382, 883, 1006, 1081
Hpy188III	TCNNGA	4 cut(s)	273, 342, 588, 1043
Hpy8I	GTNNAC	3 cut(s)	166, 329, 943
HpyAV	CCTTC	5 cut(s)	487, 556, 700, 706, 1143
HpyCH4III	ACNGT	2 cut(s)	1050, 1106
HpyCH4IV	ACGT	2 cut(s)	483, 742
HpyCH4V	TGCA	8 cut(s)	24, 47, 92, 155, 461, 518, 625, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 503, 512, 515, 668
HpyF3I	CTNAG	5 cut(s)	135, 263, 816, 888, 995
HpySE526I	ACGT	2 cut(s)	483, 742
Hsp92I	GRCGYC	2 cut(s)	483, 523
Hsp92II	CATG	3 cut(s)	271, 764, 803
Kzo9I	GATC	1 cut(s)	305
LmnI	GCTCC	2 cut(s)	388, 595
Lsp1109I	GCAGC	6 cut(s)	68, 243, 445, 467, 502, 518
LweI	GCATC	2 cut(s)	164, 680
MaeI	CTAG	1 cut(s)	894
MaeII	ACGT	2 cut(s)	483, 742
MaeIII	GTNAC	5 cut(s)	270, 398, 466, 771, 1027
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MluCI	AATT	6 cut(s)	173, 335, 970, 1000, 1021, 1124
MmeI	TCCRAC	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	877
MseI	TTAA	2 cut(s)	182, 291
MspA1I	CMGCKG	4 cut(s)	59, 458, 509, 583
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	2 cut(s)	500, 904
Mva1269I	GAATGC	2 cut(s)	49, 732
MvaI	CCWGG	2 cut(s)	500, 904
MwoI	GCNNNNNNNGC	5 cut(s)	53, 503, 512, 515, 668
NcoI	CCATGG	1 cut(s)	799
NdeII	GATC	1 cut(s)	305
NlaIII	CATG	3 cut(s)	271, 764, 803
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	270
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	964
PceI	AGGCCT	1 cut(s)	962
PctI	GAATGC	2 cut(s)	49, 732
PdmI	GAANNNNTTC	1 cut(s)	877
PfeI	GAWTC	4 cut(s)	139, 219, 812, 1076
PfoI	TCCNGGA	1 cut(s)	902
PkrI	GCNGC	6 cut(s)	58, 233, 457, 460, 508, 517
Ppu21I	YACGTR	1 cut(s)	743
Psp6I	CCWGG	2 cut(s)	498, 902
PspGI	CCWGG	2 cut(s)	498, 902
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	297, 496
PspXI	VCTCGAGB	1 cut(s)	964
PstI	CTGCAG	2 cut(s)	463, 781
PvuII	CAGCTG	3 cut(s)	59, 458, 509
RsaI	GTAC	3 cut(s)	898, 993, 1070
RsaNI	GTAC	3 cut(s)	897, 992, 1069
SaqAI	TTAA	2 cut(s)	182, 291
SatI	GCNGC	6 cut(s)	57, 232, 456, 459, 507, 516
Sau3AI	GATC	1 cut(s)	305
Sau96I	GGNCC	2 cut(s)	297, 496
ScaI	AGTACT	1 cut(s)	898
ScrFI	CCNGG	2 cut(s)	500, 904
SfaNI	GCATC	2 cut(s)	164, 680
SfcI	CTRYAG	2 cut(s)	459, 777
Sfr274I	CTCGAG	1 cut(s)	964
SinI	GGWCC	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	964
SmlI	CTYRAG	1 cut(s)	964
SmoI	CTYRAG	1 cut(s)	964
Sse9I	AATT	6 cut(s)	173, 335, 970, 1000, 1021, 1124
SseBI	AGGCCT	1 cut(s)	962
SsiI	CCGC	1 cut(s)	583
SspI	AATATT	2 cut(s)	406, 877
SspMI	CTAG	1 cut(s)	894
StuI	AGGCCT	1 cut(s)	962
StyD4I	CCNGG	2 cut(s)	498, 902
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	1050, 1106
TaiI	ACGT	2 cut(s)	486, 745
TaqI	TCGA	1 cut(s)	965
TasI	AATT	6 cut(s)	173, 335, 970, 1000, 1021, 1124
TatI	WGTACW	1 cut(s)	896
TfiI	GAWTC	4 cut(s)	139, 219, 812, 1076
Tru1I	TTAA	2 cut(s)	182, 291
Tru9I	TTAA	2 cut(s)	182, 291
TscAI	CASTG	2 cut(s)	175, 307
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	6 cut(s)	56, 231, 455, 458, 506, 515
Tsp45I	GTSAC	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	151, 1056
TspRI	CASTG	2 cut(s)	175, 307
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	2 cut(s)	1021, 1124
XceI	RCATGY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	964
XmnI	GAANNNNTTC	1 cut(s)	877
XspI	CTAG	1 cut(s)	894
ZraI	GACGTC	1 cut(s)	484
ZrmI	AGTACT	1 cut(s)	898
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.