Rorug01G0110700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000606
Physical Location & Seq
Forward (+)
19761313 .. 19763349
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0110700.1

Sequence Viewer

Length: 780 bp
ATGGGTCCAAAGAAGGGTGGAAAAGCTCCAGTTGCTGCTTCTAAGAAGAAGCCGGAGAAGGTGGTGAACCCACTTTTCGAGAAGCGGCCGAAGCAGTTTGGGATCGGAGGGGCGTTGCCACCCAAGAGGGATCTGACCCGCTTCGTTAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAAAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTCTGAACCAGTTCACCAAGACCCTCGACAAAAACCTCGCTACAAGTCTGTTCAAGATGCTTTTGAAGTACAGGCCTGAGGACAAAGCAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCACAGGCAGAAACTGAAGGAAAAACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAATATGGTCTCAACCATGTCACCTACCTCATTGAGCAGAATAAGGCTCAACTAGTAGTTATTGCTCATGATGTGGATCCGATAGAGTTGGTTGTCTGGCTCCCTGCCTTGTGCAGGAAGATGGAAATCCCCTACTGCATTGTGAAGGGCAAAGCACGCTTGGGAGCGATCGTCCATAAGAAAACTGCTTCGGTTTTGTGCCTGACAACGGTCAAGAATGAAGATAAGATGGAGTTCAGCAAGGTTTTGGAAGCAATAAAGGCTAACTTCAATGACAAGTATGAGGAATACAGGAAAAAGTGGGGTGGTGGCATCATGGGTTCCAAATCCCAGGCCAAAACTAAGGCAAAGGAAAGGCTCCTCGCAAAAGAAGCCGCCCAAAGAATGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
INCENP_ARK-bind

Protein Analysis

259

Amino Acids

29.37

Weight (kDa)

10.17

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L7Ae PF01248 116 - 207 1.6e-26 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 85, 139, 762
AclWI GGATC 6 cut(s) 110, 138, 181, 194, 458, 471
AcoI YGGCCR 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 14, 501, 595
AgsI TTSAA 6 cut(s) 205, 271, 283, 328, 365, 658
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 2 cut(s) 26, 218
AluI AGCT 2 cut(s) 26, 218
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 6 cut(s) 110, 138, 181, 194, 458, 471
AlwNI CAGNNNCTG 2 cut(s) 35, 347
AoxI GGCC 4 cut(s) 86, 152, 290, 720
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 5, 153
AsuHPI GGTGA 3 cut(s) 76, 223, 400
AvaII GGWCC 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 337
BamHI GGATCC 2 cut(s) 186, 463
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 502, 610
BciT130I CCWGG 1 cut(s) 719
BcoDI GTCTC 1 cut(s) 401
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 1 cut(s) 440
BisI GCNGC 3 cut(s) 36, 86, 762
BlsI GCNGC 3 cut(s) 37, 87, 763
Bme1390I CCNGG 1 cut(s) 719
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 5, 153
BmiI GGNNCC 7 cut(s) 6, 188, 210, 465, 488, 709, 746
BmrFI CCNGG 1 cut(s) 719
BmsI GCATC 2 cut(s) 264, 708
BoxI GACNNNNGTC 1 cut(s) 596
BpmI CTGGAG 2 cut(s) 12, 198
BpuEI CTTGAG 1 cut(s) 176
BsaBI GATNNNNATC 2 cut(s) 462, 512
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 156, 717
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 501, 595
Bse1I ACTGG 2 cut(s) 29, 226
Bse21I CCTNAGG 1 cut(s) 294
Bse8I GATNNNNATC 2 cut(s) 462, 512
BseBI CCWGG 1 cut(s) 719
BseDI CCNNGG 2 cut(s) 156, 717
BseJI GATNNNNATC 2 cut(s) 462, 512
BseLI CCNNNNNNNGG 3 cut(s) 14, 501, 595
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 29, 226
BseRI GAGGAG 1 cut(s) 737
BseSI GKGCMC 1 cut(s) 337
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 520
Bsh1285I CGRYCG 2 cut(s) 89, 558
BshFI GGCC 4 cut(s) 88, 154, 292, 722
BsiEI CGRYCG 2 cut(s) 89, 558
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 14, 501, 595
BsmAI GTCTC 1 cut(s) 401
BsnI GGCC 4 cut(s) 88, 154, 292, 722
Bso31I GGTCTC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 102, 130, 186, 463, 555
BspACI CCGC 3 cut(s) 85, 139, 762
BspANI GGCC 4 cut(s) 88, 154, 292, 722
BspCNI CTCAG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 7 cut(s) 6, 188, 210, 465, 488, 709, 746
BspPI GGATC 6 cut(s) 110, 138, 181, 194, 458, 471
BspTNI GGTCTC 1 cut(s) 401
BsrI ACTGG 2 cut(s) 29, 226
BssECI CCNNGG 2 cut(s) 156, 717
BssMI GATC 5 cut(s) 102, 130, 186, 463, 555
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 361, 598
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 42, 294, 729
BstENI CCTNNNNNAGG 1 cut(s) 499
BstKTI GATC 5 cut(s) 105, 133, 189, 466, 558
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 5 cut(s) 102, 130, 186, 463, 555
BstMCI CGRYCG 2 cut(s) 89, 558
BstMWI GCNNNNNNNGC 5 cut(s) 32, 91, 543, 647, 758
BstNI CCWGG 1 cut(s) 719
BstPAI GACNNNNGTC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 3 cut(s) 130, 186, 463
BstYI RGATCY 3 cut(s) 130, 186, 463
BstZI CGGCCG 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 4 cut(s) 88, 154, 292, 722
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 2 cut(s) 35, 347
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 5, 153
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 404, 455, 703
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 42, 294, 729
DpnI GATC 5 cut(s) 104, 132, 188, 465, 557
DpnII GATC 5 cut(s) 102, 130, 186, 463, 555
EaeI YGGCCR 1 cut(s) 86
EagI CGGCCG 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 5
Eco52I CGGCCG 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 3 cut(s) 407, 458, 706
FaiI YATR 6 cut(s) 393, 405, 456, 564, 669, 704
FalI AAGNNNNNCTT 3 cut(s) 638, 670, 760
FatI CATG 3 cut(s) 403, 454, 702
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 3 cut(s) 36, 86, 762
Fsp4HI GCNGC 3 cut(s) 36, 86, 762
FspBI CTAG 1 cut(s) 440
GluI GCNGC 3 cut(s) 36, 86, 762
GsuI CTGGAG 2 cut(s) 12, 198
HaeIII GGCC 4 cut(s) 88, 154, 292, 722
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 407, 458, 706
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 53
HphI GGTGA 3 cut(s) 76, 223, 400
Hpy166II GTNNAC 2 cut(s) 67, 231
Hpy188I TCNGA 6 cut(s) 107, 135, 168, 174, 222, 468
Hpy188III TCNNGA 4 cut(s) 79, 271, 455, 601
Hpy8I GTNNAC 2 cut(s) 67, 231
HpyAV CCTTC 6 cut(s) 7, 52, 199, 307, 344, 526
HpyCH4III ACNGT 2 cut(s) 361, 598
HpyCH4V TGCA 2 cut(s) 501, 525
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 91, 543, 647, 758
HpyF3I CTNAG 3 cut(s) 42, 294, 729
Hsp92II CATG 3 cut(s) 407, 458, 706
Kzo9I GATC 5 cut(s) 102, 130, 186, 463, 555
LmnI GCTCC 5 cut(s) 31, 316, 492, 551, 750
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 264, 708
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 406
MalI GATC 5 cut(s) 104, 132, 188, 465, 557
MboI GATC 5 cut(s) 102, 130, 186, 463, 555
MboII GAAGA 5 cut(s) 58, 190, 322, 517, 620
MflI RGATCY 3 cut(s) 130, 186, 463
MhlI GDGCHC 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 147, 778
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 719
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 5 cut(s) 32, 91, 543, 647, 758
NdeII GATC 5 cut(s) 102, 130, 186, 463, 555
NlaIII CATG 3 cut(s) 407, 458, 706
NlaIV GGNNCC 7 cut(s) 6, 188, 210, 465, 488, 709, 746
NmuCI GTSAC 1 cut(s) 406
PagI TCATGA 1 cut(s) 454
PceI AGGCCT 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 3 cut(s) 37, 87, 763
Ple19I CGATCG 1 cut(s) 558
PshAI GACNNNNGTC 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 7 cut(s) 6, 188, 210, 465, 488, 709, 746
PspPI GGNCC 2 cut(s) 5, 153
PstNI CAGNNNCTG 2 cut(s) 35, 347
PsuI RGATCY 3 cut(s) 130, 186, 463
PvuI CGATCG 1 cut(s) 558
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 147, 778
SatI GCNGC 3 cut(s) 36, 86, 762
Sau3AI GATC 5 cut(s) 102, 130, 186, 463, 555
Sau96I GGNCC 2 cut(s) 5, 153
ScrFI CCNGG 1 cut(s) 719
SduI GDGCHC 1 cut(s) 337
SetI ASST 9 cut(s) 28, 63, 203, 210, 220, 255, 413, 417, 633
SfaNI GCATC 2 cut(s) 264, 708
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 439
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 3 cut(s) 85, 139, 762
SspMI CTAG 1 cut(s) 440
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 717
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 361, 598
TaqI TCGA 2 cut(s) 78, 243
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 88, 764
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 147, 778
Tru9I TTAA 2 cut(s) 147, 778
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 621
VpaK11BI GGWCC 1 cut(s) 5
XagI CCTNNNNNAGG 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.