Rroxscaffold_4G00303160

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000606
Physical Location & Seq
Forward (+)
23529016 .. 23529933
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303160.1

Sequence Viewer

Length: 201 bp
ATGCCGGAGAGCTTCGCGGCGGAGATTATAGCAAAGGAATTATGTCTTGAAAATGTTAGTGGAATAAAAAATATCACTAATGAGAGCTCGTCTTTGGAAAGATTTAGTTATGTGTTTCTTTTTGACAATTATGAGCTTTGGGATCTTAACATTTCAGGGGAGAAACTTGAGGAAATATGTATACGCCGGGAATTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

66

Amino Acids

7.71

Weight (kDa)

4.32

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 181
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 17, 20
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 191
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 3 cut(s) 12, 87, 136
AluI AGCT 3 cut(s) 12, 87, 136
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 188
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 188
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 5, 187
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 2 cut(s) 17, 20
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 150
BssMI GATC 1 cut(s) 142
BssNAI GTATAC 1 cut(s) 182
Bst1107I GTATAC 1 cut(s) 182
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZ17I GTATAC 1 cut(s) 182
CviJI RGCY 3 cut(s) 12, 87, 136
CviKI_1 RGCY 3 cut(s) 12, 87, 136
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 89
FaiI YATR 6 cut(s) 29, 43, 111, 132, 178, 182
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 18
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HapII CCGG 2 cut(s) 5, 187
HpaII CCGG 2 cut(s) 5, 187
Hpy166II GTNNAC 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 2 cut(s) 18, 141
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 3 cut(s) 38, 127, 191
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 147
MspI CCGG 2 cut(s) 5, 187
MspR9I CCNGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 17
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 142
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 89
SetI ASST 3 cut(s) 14, 89, 138
SgeI CNNG 6 cut(s) 17, 28, 59, 100, 168, 179
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 3 cut(s) 38, 127, 191
SsiI CCGC 2 cut(s) 17, 20
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 186
TasI AATT 3 cut(s) 38, 127, 191
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
XapI RAATTY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.