Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000606

Physical Location & Seq

Genomic Coordinates Reverse (-)

7484880 .. 7487360

Gene Structure 2481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG095600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAAGGTATTCAGACACCTTTTGCGGTGAAAACCGTTAAAGACAACTACTATAAGGCATACGGCACTTATGCATCGATCCGTGCATTGATCATGGGATTACCAAAAAGTGCAATGCATGCACTTTTCAAGAGACCCCAAGCTGCAGCTGGCAAGTACACCACTTACAACCACCTCAACATCAGTTGGGCACCTCACGGCCCATATTGGCGCCAAGGCCGCAAAATCTACCTCTCCGAGCTATTCAACTCGAAGAGACTAGACTCTTTTGAGTACATTCGTGTGGAGGAAACTTGCGCTTTCCTCTCGCAGCTATGTGCCTTGTCAGGCAAGCCAGTCACCCTCAAGGAGCACCTCTCACGCCTCACTCTCGGCATTATAAGTAGGATTGTGTTGGGGAAGAAGTACTTCAGCGTGTCTGAGTCTGAGACTTCGATTGTGGCACTCGACGAGTTCCAGCAGATGCTGGACGAGTTGTTCTTGCTTAATGGGGTGTTGAACATAGGGGATTGGATACCCTGGCTCGAGCTTTTGGACTTGCAAGGTTATGTTAAGCGTATGAAGGCTTTAAAGAAAAAGTTCGACAGATTTCATGACCATGTTTTCGGTGAACACAGATCAAACAAGGAAGGTGTAAAGGAGTTTGTGCCAAAGGACATAGTAGATGTACTATTGAAGCTCGCTGATGATCCTAATATTGAAGTTAAGCTAAACTATGACAGTGTCAGGGAACTCACCCAGGATTTAATAGCGGAAGGCACTGATACCTTAGCGACCACTGTGGACTGGGCAATGTCCGAACTGATGAAACAACCACACCTCATCGAAAAAGCGATCGAAGAACTTGACAGAGTGATTGGGAGAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

290

Amino Acids

33.32

Weight (kDa)

8.31

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	30 - 290	1.9e-31	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica	MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica	Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis	pycom02g07340 pycom15g19370
rosa_chinensis	RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata	RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora	Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii	Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa	Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha	Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana	Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccB1I	GGYRCC	2 cut(s)	190, 210
AciI	CCGC	3 cut(s)	26, 220, 752
AclWI	GGATC	2 cut(s)	73, 683
AcuI	CTGAAG	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	4 cut(s)	158, 275, 407, 669
AgsI	TTSAA	5 cut(s)	130, 247, 499, 676, 701
AjnI	CCWGG	2 cut(s)	518, 738
AloI	GAACNNNNNNTCC	2 cut(s)	461, 493
AluBI	AGCT	7 cut(s)	143, 149, 241, 313, 529, 679, 709
AluI	AGCT	7 cut(s)	143, 149, 241, 313, 529, 679, 709
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	127, 250, 422
AlwI	GGATC	2 cut(s)	73, 683
AlwNI	CAGNNNCTG	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	199, 217
ApeKI	GCWGC	3 cut(s)	143, 146, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
Asp700I	GAANNNNTTC	2 cut(s)	407, 578
AspLEI	GCGC	2 cut(s)	213, 299
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	40, 331, 620, 727
AvaI	CYCGRG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	190, 210
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	130, 158, 322
BceAI	ACGGC	2 cut(s)	79, 214
BciT130I	CCWGG	2 cut(s)	520, 740
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	127, 250, 422
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	4 cut(s)	144, 147, 220, 311
BlsI	GCNGC	4 cut(s)	145, 148, 221, 312
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	2 cut(s)	520, 740
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	192, 212
BmrFI	CCNGG	2 cut(s)	520, 740
BmrI	ACTGGG	1 cut(s)	796
BmsI	GCATC	2 cut(s)	83, 453
BmuI	ACTGGG	1 cut(s)	796
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu10I	CCTNAGC	1 cut(s)	769
BpuEI	CTTGAG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	214, 518, 738
Bse1I	ACTGG	2 cut(s)	335, 791
Bse3DI	GCAATG	2 cut(s)	120, 798
BseBI	CCWGG	2 cut(s)	520, 740
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	214, 518, 738
BseMI	GCAATG	2 cut(s)	120, 798
BseMII	CTCAG	2 cut(s)	411, 417
BseNI	ACTGG	2 cut(s)	335, 791
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	3 cut(s)	130, 158, 322
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	201, 219
BshNI	GGYRCC	2 cut(s)	190, 210
BshVI	ATCGAT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	524
BsmAI	GTCTC	3 cut(s)	127, 250, 422
BsnI	GGCC	2 cut(s)	201, 219
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	193, 354
Bsp143I	GATC	5 cut(s)	78, 90, 617, 688, 834
BspACI	CCGC	3 cut(s)	26, 220, 752
BspANI	GGCC	2 cut(s)	201, 219
BspCNI	CTCAG	2 cut(s)	412, 418
BspDI	ATCGAT	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	192, 212
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	2 cut(s)	73, 683
BspT107I	GGYRCC	2 cut(s)	190, 210
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	120, 798
BsrI	ACTGG	2 cut(s)	335, 791
BssECI	CCNNGG	3 cut(s)	214, 518, 738
BssMI	GATC	5 cut(s)	78, 90, 617, 688, 834
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	520, 740
Bst4CI	ACNGT	3 cut(s)	37, 722, 781
Bst6I	CTCTTC	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	120, 151, 332, 681
BstDEI	CTNAG	3 cut(s)	420, 426, 769
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	213, 299
BstKTI	GATC	5 cut(s)	81, 93, 620, 691, 837
BstMAI	GTCTC	3 cut(s)	127, 250, 422
BstMBI	GATC	5 cut(s)	78, 90, 617, 688, 834
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 219
BstNI	CCWGG	2 cut(s)	520, 740
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	518, 738
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	3 cut(s)	130, 158, 322
Bsu15I	ATCGAT	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	201, 219
BsuTUI	ATCGAT	1 cut(s)	77
BtsIMutI	CAGTG	3 cut(s)	727, 759, 777
Cac8I	GCNNGC	4 cut(s)	120, 151, 332, 681
CaiI	CAGNNNCTG	1 cut(s)	466
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	2 cut(s)	213, 299
Cfr13I	GGNCC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	77
Csp6I	GTAC	4 cut(s)	157, 274, 406, 668
CviAII	CATG	4 cut(s)	94, 119, 593, 599
CviQI	GTAC	4 cut(s)	157, 274, 406, 668
DdeI	CTNAG	3 cut(s)	420, 426, 769
DinI	GGCGCC	1 cut(s)	212
DpnI	GATC	5 cut(s)	80, 92, 619, 690, 836
DpnII	GATC	5 cut(s)	78, 90, 617, 688, 834
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	518, 738
EcoT14I	CCWWGG	1 cut(s)	214
EcoT22I	ATGCAT	2 cut(s)	76, 120
EgeI	GGCGCC	1 cut(s)	212
EheI	GGCGCC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	4 cut(s)	97, 122, 596, 602
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	4 cut(s)	93, 118, 592, 598
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	144, 147, 220, 311
Fsp4HI	GCNGC	4 cut(s)	144, 147, 220, 311
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	2 cut(s)	212, 298
GluI	GCNGC	4 cut(s)	144, 147, 220, 311
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	201, 219
HhaI	GCGC	2 cut(s)	213, 299
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	4 cut(s)	97, 122, 596, 602
Hin6I	GCGC	2 cut(s)	211, 297
HinP1I	GCGC	2 cut(s)	211, 297
HinfI	GANTC	2 cut(s)	263, 422
HphI	GGTGA	4 cut(s)	40, 331, 620, 727
Hpy166II	GTNNAC	3 cut(s)	159, 611, 784
Hpy188I	TCNGA	5 cut(s)	15, 238, 421, 427, 799
Hpy188III	TCNNGA	2 cut(s)	130, 593
Hpy8I	GTNNAC	3 cut(s)	159, 611, 784
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	3 cut(s)	556, 623, 749
HpyCH4III	ACNGT	3 cut(s)	37, 722, 781
HpyCH4V	TGCA	7 cut(s)	74, 86, 113, 118, 122, 146, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 219
HpyF3I	CTNAG	3 cut(s)	420, 426, 769
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	97, 122, 596, 602
HspAI	GCGC	2 cut(s)	211, 297
KasI	GGCGCC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	5 cut(s)	78, 90, 617, 688, 834
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	3 cut(s)	130, 158, 322
LweI	GCATC	2 cut(s)	83, 453
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	5 cut(s)	80, 92, 619, 690, 836
MboI	GATC	5 cut(s)	78, 90, 617, 688, 834
MboII	GAAGA	3 cut(s)	265, 412, 851
MhlI	GDGCHC	2 cut(s)	193, 354
Mly113I	GGCGCC	1 cut(s)	211
MlyI	GAGTC	2 cut(s)	257, 431
MnlI	CCTC	9 cut(s)	185, 204, 242, 280, 314, 353, 365, 374, 830
Mph1103I	ATGCAT	2 cut(s)	76, 120
MroXI	GAANNNNTTC	2 cut(s)	407, 578
MseI	TTAA	6 cut(s)	39, 486, 552, 569, 705, 746
MslI	CAYNNNNRTG	2 cut(s)	281, 597
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	520, 740
MvaI	CCWGG	2 cut(s)	520, 740
MwoI	GCNNNNNNNGC	2 cut(s)	119, 219
NarI	GGCGCC	1 cut(s)	211
NdeII	GATC	5 cut(s)	78, 90, 617, 688, 834
NlaIII	CATG	4 cut(s)	97, 122, 596, 602
NlaIV	GGNNCC	2 cut(s)	192, 212
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	2 cut(s)	76, 120
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	592
PdmI	GAANNNNTTC	2 cut(s)	407, 578
PflFI	GACNNNGTC	1 cut(s)	722
PkrI	GCNGC	4 cut(s)	145, 148, 221, 312
Ple19I	CGATCG	1 cut(s)	837
PleI	GAGTC	2 cut(s)	257, 430
PluTI	GGCGCC	1 cut(s)	214
PpsI	GAGTC	2 cut(s)	257, 430
PsiI	TTATAA	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	518, 738
PspGI	CCWGG	2 cut(s)	518, 738
PspN4I	GGNNCC	2 cut(s)	192, 212
PspPI	GGNCC	1 cut(s)	200
PspXI	VCTCGAGB	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	722
PvuI	CGATCG	1 cut(s)	837
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	158, 275, 407, 669
RsaNI	GTAC	4 cut(s)	157, 274, 406, 668
RseI	CAYNNNNRTG	2 cut(s)	281, 597
SaqAI	TTAA	6 cut(s)	39, 486, 552, 569, 705, 746
SatI	GCNGC	4 cut(s)	144, 147, 220, 311
Sau3AI	GATC	5 cut(s)	78, 90, 617, 688, 834
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	2 cut(s)	257, 431
ScrFI	CCNGG	2 cut(s)	520, 740
SduI	GDGCHC	2 cut(s)	193, 354
SfaNI	GCATC	2 cut(s)	83, 453
SfcI	CTRYAG	1 cut(s)	144
SfoI	GGCGCC	1 cut(s)	212
Sfr274I	CTCGAG	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	2 cut(s)	281, 597
SmlI	CTYRAG	2 cut(s)	344, 524
SmoI	CTYRAG	2 cut(s)	344, 524
SphI	GCATGC	1 cut(s)	122
SsiI	CCGC	3 cut(s)	26, 220, 752
SspDI	GGCGCC	1 cut(s)	210
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	518, 738
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	37, 722, 781
TaqI	TCGA	8 cut(s)	77, 251, 434, 447, 525, 582, 825, 837
TatI	WGTACW	4 cut(s)	156, 273, 405, 667
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	6 cut(s)	39, 486, 552, 569, 705, 746
Tru9I	TTAA	6 cut(s)	39, 486, 552, 569, 705, 746
TscAI	CASTG	3 cut(s)	727, 766, 784
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	143, 146, 310
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	17, 575, 581, 821
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	727, 766, 784
Tth111I	GACNNNGTC	1 cut(s)	722
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	407, 578
XspI	CTAG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	2 cut(s)	76, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.