Rh2DG095500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000606
Physical Location & Seq
Reverse (-)
7478658 .. 7484764
6107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG095500.1

Sequence Viewer

Length: 321 bp
ATGTGGAAGGTTACGATATTCGTAAGGGGACAAGACCAGGTACACAGCGACGACGATACTGGCATTGACGCAAGAAGTGGCGCACTTCTTCAGAACAAAGATTGGAATATTGTCTCAAGAATACAAACACGGCAAAGAGAACAGTTACTTTTTCCCATTTATCTCAACCTATGCAGGACTTTGGAATATGAAGTTGCTGATTCTTTGATTTTATATCATCCACATGTCTATAAGAGGAATGATTTTCAATGGAACTTCTATTCTTTTTCTACGATAATGGACACAAGACTTACATTCAGGGTACAAAAGGGGGATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.72

Weight (kDa)

7.9

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 2 cut(s) 42, 303
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 144
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 83
BstMAI GTCTC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 217
CfoI GCGC 1 cut(s) 83
CseI GACGC 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 36
Csp6I GTAC 2 cut(s) 41, 302
CviAII CATG 1 cut(s) 224
CviQI GTAC 2 cut(s) 41, 302
Eco57I CTGAAG 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 172, 189, 214, 225, 231
FaqI GGGAC 1 cut(s) 42
FatI CATG 1 cut(s) 223
FokI GGATG 1 cut(s) 204
GlaI GCGC 1 cut(s) 82
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 2 cut(s) 53, 56
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 174
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 23, 45, 50, 160, 283
MabI ACCWGGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 10, 144
MboII GAAGA 1 cut(s) 80
MnlI CCTC 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NlaIII CATG 1 cut(s) 227
NspI RCATGY 1 cut(s) 227
PciI ACATGT 1 cut(s) 223
PfeI GAWTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
RsaI GTAC 2 cut(s) 42, 303
RsaNI GTAC 2 cut(s) 41, 302
RseI CAYNNNNRTG 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 38
SetI ASST 3 cut(s) 12, 42, 171
SexAI ACCWGGT 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SspI AATATT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 144
TfiI GAWTC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 204
XceI RCATGY 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.