RchiOBHm_Chr2g0094971

Flavonoid 3-hydroxylase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
7828715 .. 7829926
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46996

Sequence Viewer

Length: 966 bp
ATGGAGTCTCTTTCTTGTGCTATTTCAACGCTAGCAGTAATCTTTGCTACTCTGACCTTCCTCTCAAAAGTTCTCTTCCCCAAAAGCCACAAACTGAATCTGAAATTTCCACCCGGTCCAAAACCCTGGCCGATCATTGGCAACCTCAACCTCATTGTTGTTATTGCTTCATCTCCAGAAATAGCAAAGCAAATTTTAAGGACGCATGATCATGTGTTTGCCTCCAGACCCCAAGCTGCAGCTGGCAAGTACACCACTTACAACCACCTCAACATCAGTTGGGCACCTCACGGCCCATATTGGCGCCAAGGCCGCAAAATCTACCTCTCCGAGCTATTCAACTCGAAGAGACTAGACTCTTTTGAGTACATTCGTGTGGAGGAAACTTGCGCTTTCCTCTCGCAGCTATGTGCCTTGTCAGGCAAGCCAGTCACCCTCAAGGAGCACCTCTCACGCCTCACTCTCGGCATTATAAGTAGGATTGTGTTGGGGAAGAAGTACTTCAGCGTGTCTGAGTCTGAGACTTCGATTGTGGCACTCGACGAGTTCCAGCAGATGCTGGACGAGTTGTTCTTGCTTAATGGGGTGTTGAACATAGGGGATTGGATACCCTGGCTCGAGCTTTTGGACTTGCAAGGTTATGTTAAGCGTATGAAGGCTTTAAAGAAAAAGTTCGACAGATTTCATGACCATGTTTTCGGTGAACACAGATCAAACAAGGAAGGTGTAAAGGAGTTTGTGCCAAAGGACATAGTAGATGTACTATTGAAGCTCGCTGATGATCCTAATATTGAAGTTAAGCTAAACTATGACAGTGTCAGGGAACTCACCCAGGATTTAATAGCGGAAGGCACTGATACCTTAGCGACCACTGTGGACTGGGCAATGTCCGAACTGATGAAACAACCACACCTCATCGAAAAAGCGATCGAAGAACTTGACAGAGTGATTGGGAGAGAGAGATGA

Protein Analysis

321

Amino Acids

36.6

Weight (kDa)

7.16

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 53 - 321 6.8e-36 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AccB1I GGYRCC 2 cut(s) 283, 303
AciI CCGC 2 cut(s) 313, 845
AclWI GGATC 1 cut(s) 776
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 2 cut(s) 104, 192
AcuI CTGAAG 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 4 cut(s) 251, 368, 500, 762
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 5 cut(s) 27, 340, 592, 769, 794
AjnI CCWGG 3 cut(s) 125, 611, 831
AloI GAACNNNNNNTCC 2 cut(s) 554, 586
AluBI AGCT 7 cut(s) 236, 242, 334, 406, 622, 772, 802
AluI AGCT 7 cut(s) 236, 242, 334, 406, 622, 772, 802
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 3 cut(s) 12, 343, 515
AlwI GGATC 1 cut(s) 776
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 3 cut(s) 128, 292, 310
ApeKI GCWGC 3 cut(s) 236, 239, 403
ApoI RAATTY 2 cut(s) 104, 192
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
Asp700I GAANNNNTTC 2 cut(s) 500, 671
AspLEI GCGC 2 cut(s) 306, 392
AspS9I GGNCC 2 cut(s) 116, 293
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 424, 713, 820
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 286
BanI GGYRCC 2 cut(s) 283, 303
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 3 cut(s) 223, 251, 415
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 3 cut(s) 127, 613, 833
BciVI GTATCC 1 cut(s) 600
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 12, 343, 515
BfaI CTAG 2 cut(s) 32, 353
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 307
BfuI GTATCC 1 cut(s) 600
BisI GCNGC 4 cut(s) 237, 240, 313, 404
BlsI GCNGC 4 cut(s) 238, 241, 314, 405
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 4 cut(s) 114, 127, 613, 833
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 116, 293
BmiI GGNNCC 2 cut(s) 285, 305
BmrFI CCNGG 4 cut(s) 114, 127, 613, 833
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 1 cut(s) 546
BmtI GCTAGC 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 889
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 2 cut(s) 159, 208
Bpu10I CCTNAGC 1 cut(s) 862
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 4 cut(s) 125, 307, 611, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 428, 884
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 3 cut(s) 127, 613, 833
BseDI CCNNGG 4 cut(s) 125, 307, 611, 831
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 2 cut(s) 504, 510
BseNI ACTGG 2 cut(s) 428, 884
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 3 cut(s) 223, 251, 415
Bsh1285I CGRYCG 1 cut(s) 930
BshFI GGCC 3 cut(s) 130, 294, 312
BshNI GGYRCC 2 cut(s) 283, 303
BsiEI CGRYCG 1 cut(s) 930
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 3 cut(s) 12, 343, 515
BsnI GGCC 3 cut(s) 130, 294, 312
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 286, 447
Bsp143I GATC 5 cut(s) 132, 208, 710, 781, 927
BspACI CCGC 2 cut(s) 313, 845
BspANI GGCC 3 cut(s) 130, 294, 312
BspCNI CTCAG 2 cut(s) 505, 511
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 285, 305
BspMAI CTGCAG 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 776
BspT107I GGYRCC 2 cut(s) 283, 303
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 2 cut(s) 428, 884
BssECI CCNNGG 4 cut(s) 125, 307, 611, 831
BssMI GATC 5 cut(s) 132, 208, 710, 781, 927
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 3 cut(s) 127, 613, 833
Bst4CI ACNGT 2 cut(s) 815, 874
Bst6I CTCTTC 2 cut(s) 80, 341
BstACI GRCGYC 1 cut(s) 304
BstC8I GCNNGC 4 cut(s) 33, 244, 425, 774
BstDEI CTNAG 3 cut(s) 513, 519, 862
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 2 cut(s) 306, 392
BstKTI GATC 5 cut(s) 135, 211, 713, 784, 930
BstMAI GTCTC 3 cut(s) 12, 343, 515
BstMBI GATC 5 cut(s) 132, 208, 710, 781, 927
BstMCI CGRYCG 1 cut(s) 930
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 3 cut(s) 127, 613, 833
BstSCI CCNGG 4 cut(s) 112, 125, 611, 831
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 3 cut(s) 223, 251, 415
BstXI CCANNNNNNTGG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 3 cut(s) 130, 294, 312
BtsIMutI CAGTG 3 cut(s) 820, 852, 870
Cac8I GCNNGC 4 cut(s) 33, 244, 425, 774
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 1 cut(s) 685
CfoI GCGC 2 cut(s) 306, 392
Cfr13I GGNCC 2 cut(s) 116, 293
CseI GACGC 1 cut(s) 211
Csp6I GTAC 4 cut(s) 250, 367, 499, 761
CviAII CATG 4 cut(s) 206, 212, 686, 692
CviQI GTAC 4 cut(s) 250, 367, 499, 761
DdeI CTNAG 3 cut(s) 513, 519, 862
DinI GGCGCC 1 cut(s) 305
DpnI GATC 5 cut(s) 134, 210, 712, 783, 929
DpnII GATC 5 cut(s) 132, 208, 710, 781, 927
DraI TTTAAA 1 cut(s) 663
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 80, 341
EarI CTCTTC 2 cut(s) 80, 341
Eco130I CCWWGG 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 617
EcoRII CCWGG 3 cut(s) 125, 611, 831
EcoT14I CCWWGG 1 cut(s) 307
EgeI GGCGCC 1 cut(s) 305
EheI GGCGCC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 307
FaeI CATG 4 cut(s) 209, 215, 689, 695
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FatI CATG 4 cut(s) 205, 211, 685, 691
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 237, 240, 313, 404
Fsp4HI GCNGC 4 cut(s) 237, 240, 313, 404
FspBI CTAG 2 cut(s) 32, 353
GlaI GCGC 2 cut(s) 305, 391
GluI GCNGC 4 cut(s) 237, 240, 313, 404
GsuI CTGGAG 2 cut(s) 159, 208
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 3 cut(s) 130, 294, 312
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 211
HhaI GCGC 2 cut(s) 306, 392
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 4 cut(s) 209, 215, 689, 695
Hin6I GCGC 2 cut(s) 304, 390
HinP1I GCGC 2 cut(s) 304, 390
HinfI GANTC 4 cut(s) 5, 97, 356, 515
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 424, 713, 820
Hpy166II GTNNAC 3 cut(s) 252, 704, 877
Hpy188I TCNGA 6 cut(s) 54, 102, 331, 514, 520, 892
Hpy188III TCNNGA 3 cut(s) 176, 225, 686
Hpy8I GTNNAC 3 cut(s) 252, 704, 877
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 4 cut(s) 67, 649, 716, 842
HpyCH4III ACNGT 2 cut(s) 815, 874
HpyCH4V TGCA 2 cut(s) 239, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 3 cut(s) 513, 519, 862
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 4 cut(s) 209, 215, 689, 695
HspAI GCGC 2 cut(s) 304, 390
KasI GGCGCC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 5 cut(s) 132, 208, 710, 781, 927
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 3 cut(s) 223, 251, 415
LweI GCATC 1 cut(s) 546
MaeI CTAG 2 cut(s) 32, 353
MaeIII GTNAC 1 cut(s) 430
MalI GATC 5 cut(s) 134, 210, 712, 783, 929
MboI GATC 5 cut(s) 132, 208, 710, 781, 927
MboII GAAGA 4 cut(s) 67, 358, 505, 944
MhlI GDGCHC 2 cut(s) 286, 447
MluCI AATT 2 cut(s) 104, 192
Mly113I GGCGCC 1 cut(s) 304
MlyI GAGTC 3 cut(s) 14, 350, 524
MroXI GAANNNNTTC 2 cut(s) 500, 671
MseI TTAA 6 cut(s) 197, 579, 645, 662, 798, 839
MslI CAYNNNNRTG 3 cut(s) 210, 374, 690
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 4 cut(s) 114, 127, 613, 833
MvaI CCWGG 3 cut(s) 127, 613, 833
MwoI GCNNNNNNNGC 1 cut(s) 312
NarI GGCGCC 1 cut(s) 304
NciI CCSGG 1 cut(s) 114
NdeII GATC 5 cut(s) 132, 208, 710, 781, 927
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 4 cut(s) 209, 215, 689, 695
NlaIV GGNNCC 2 cut(s) 285, 305
NmeAIII GCCGAG 1 cut(s) 444
NmuCI GTSAC 1 cut(s) 430
PaeR7I CTCGAG 1 cut(s) 617
PagI TCATGA 1 cut(s) 685
PdmI GAANNNNTTC 2 cut(s) 500, 671
PfeI GAWTC 1 cut(s) 97
PflFI GACNNNGTC 1 cut(s) 815
PkrI GCNGC 4 cut(s) 238, 241, 314, 405
Ple19I CGATCG 1 cut(s) 930
PleI GAGTC 3 cut(s) 13, 350, 523
PluTI GGCGCC 1 cut(s) 307
PpsI GAGTC 3 cut(s) 13, 350, 523
PsiI TTATAA 1 cut(s) 473
Psp6I CCWGG 3 cut(s) 125, 611, 831
PspGI CCWGG 3 cut(s) 125, 611, 831
PspN4I GGNNCC 2 cut(s) 285, 305
PspPI GGNCC 2 cut(s) 116, 293
PspXI VCTCGAGB 1 cut(s) 617
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 815
PvuI CGATCG 1 cut(s) 930
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 4 cut(s) 251, 368, 500, 762
RsaNI GTAC 4 cut(s) 250, 367, 499, 761
RseI CAYNNNNRTG 3 cut(s) 210, 374, 690
SaqAI TTAA 6 cut(s) 197, 579, 645, 662, 798, 839
SatI GCNGC 4 cut(s) 237, 240, 313, 404
Sau3AI GATC 5 cut(s) 132, 208, 710, 781, 927
Sau96I GGNCC 2 cut(s) 116, 293
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 3 cut(s) 14, 350, 524
ScrFI CCNGG 4 cut(s) 114, 127, 613, 833
SduI GDGCHC 2 cut(s) 286, 447
SfaNI GCATC 1 cut(s) 546
SfcI CTRYAG 1 cut(s) 237
SfoI GGCGCC 1 cut(s) 305
Sfr274I CTCGAG 1 cut(s) 617
SinI GGWCC 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 617
SmiMI CAYNNNNRTG 3 cut(s) 210, 374, 690
SmlI CTYRAG 2 cut(s) 437, 617
SmoI CTYRAG 2 cut(s) 437, 617
Sse9I AATT 2 cut(s) 104, 192
SsiI CCGC 2 cut(s) 313, 845
SspDI GGCGCC 1 cut(s) 303
SspI AATATT 1 cut(s) 790
SspMI CTAG 2 cut(s) 32, 353
StyD4I CCNGG 4 cut(s) 112, 125, 611, 831
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 815, 874
TaqI TCGA 7 cut(s) 344, 527, 540, 618, 675, 918, 930
TasI AATT 2 cut(s) 104, 192
TatI WGTACW 4 cut(s) 249, 366, 498, 760
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 6 cut(s) 197, 579, 645, 662, 798, 839
Tru9I TTAA 6 cut(s) 197, 579, 645, 662, 798, 839
TscAI CASTG 3 cut(s) 820, 859, 877
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 3 cut(s) 236, 239, 403
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 159, 668, 674, 914
TspRI CASTG 3 cut(s) 820, 859, 877
Tth111I GACNNNGTC 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 104, 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 617
XmnI GAANNNNTTC 2 cut(s) 500, 671
XspI CTAG 2 cut(s) 32, 353
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.