Rh5DG460500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000606
Physical Location & Seq
Reverse (-)
73157323 .. 73160236
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG460500.1

Sequence Viewer

Length: 207 bp
ATGTTGCACGATCTCAACACAAACGAAGATTCAGATGACGTGATGATGGTTGATTGGAGTACATATGGCTACATCAGTACTCACCCATCACTCAATTTACGGTTCATACAGAAAGAGCAGCAGAGCAAAATCAAACAGGAGGAGAAAACTATAATCAAGTCCGCTGAGAATCTTGCAGATTCACTTGAGACAACCGGAAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.79

Weight (kDa)

4.52

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AfaI GTAC 2 cut(s) 61, 79
AjiI CACGTC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 74
BbvI GCAGC 1 cut(s) 130
BccI CCATC 2 cut(s) 40, 94
BcoDI GTCTC 1 cut(s) 182
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmcAI AGTACT 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 194
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 157
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 165
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 130
BtrI CACGTC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 60, 78
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
CviQI GTAC 2 cut(s) 60, 78
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
FaiI YATR 4 cut(s) 64, 66, 107, 152
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HapII CCGG 1 cut(s) 195
HinfI GANTC 3 cut(s) 29, 169, 179
HpaII CCGG 1 cut(s) 195
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 7, 176
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 39
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 130
MaeII ACGT 1 cut(s) 39
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 38
MluCI AATT 1 cut(s) 94
MnlI CCTC 1 cut(s) 133
MseI TTAA 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 64
NdeII GATC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 29, 169, 179
PkrI GCNGC 1 cut(s) 120
RsaI GTAC 2 cut(s) 61, 79
RsaNI GTAC 2 cut(s) 60, 78
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 79
SetI ASST 1 cut(s) 42
SgeI CNNG 6 cut(s) 20, 52, 149, 169, 185, 197
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 162
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 42
TasI AATT 1 cut(s) 94
TatI WGTACW 2 cut(s) 59, 77
TfiI GAWTC 3 cut(s) 29, 169, 179
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.