Rroxscaffold_4G00297070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000606
Physical Location & Seq
Reverse (-)
17069591 .. 17071751
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297070.1

Sequence Viewer

Length: 192 bp
ATGGTTTTCAGCCAGGTATACAGCGACGACAATACTGGCATTGATGCAAGAAGTGGCGCACTTCTTCAGAACAAAGTGGCAATTGAGTATGGAGAAAGCTTAGTGTATGAGCGTTCGCTCAAGTTCAGTCTGATGGGTAGGAAGGGGTTAGAGATTTTGCTGTCAAACATTGCCAGTTCTGTACATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.91

Weight (kDa)

5.62

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 183
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
AspLEI GCGC 1 cut(s) 59
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 40, 174
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 40, 174
Bsp1407I TGTACA 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 181
BsrI ACTGG 2 cut(s) 40, 174
BssNAI GTATAC 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 100, 189
BstHHI GCGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstZ17I GTATAC 1 cut(s) 19
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 2 cut(s) 12, 99
CviKI_1 RGCY 2 cut(s) 12, 99
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 100, 189
Eco57I CTGAAG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 12
FaiI YATR 3 cut(s) 19, 90, 108
FblI GTMKAC 1 cut(s) 18
GlaI GCGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 69, 132
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 100, 189
HspAI GCGC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 21, 26, 187
LweI GCATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 56
MfeI CAATTG 1 cut(s) 81
MluCI AATT 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 14
SetI ASST 2 cut(s) 18, 101
SfaNI GCATC 1 cut(s) 34
SgeI CNNG 6 cut(s) 25, 26, 48, 60, 133, 186
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 12
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.