Rroxscaffold_2G00116650

Belongs to the eukaryotic ribosomal protein eL27 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000606
Physical Location & Seq
Forward (+)
43894805 .. 43897641
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116650.1

Sequence Viewer

Length: 264 bp
ATGGTGAAGTGTACGAGGCCAACCAATGCGGTGATCCTCCTCCACGGTCGCTACGCCGGCCGCAAGGCCTTCATCGTCGAGGGCGTCGACTACACCGCCTCATCGCGGAATCAAGGAAAAGAGGAGCAGAGCAAAATCAAACAGGAGGAGAAAATTATTATCAAGTCGGCTGACAATTTTGCAGATTCACTTGAGGTACACAGCGACGACGATACTGGCATTGATGCAAGAAGTGGCGCACTTCTTCAGAACAAAGGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L27e

Protein Analysis

87

Amino Acids

9.57

Weight (kDa)

6.82

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 106
AciI CCGC 4 cut(s) 29, 61, 96, 106
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 13, 198
AfiI CCNNNNNNNGG 1 cut(s) 105
AlwI GGATC 1 cut(s) 28
AoxI GGCC 3 cut(s) 17, 58, 66
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 16, 43
BaeGI GKGCMC 1 cut(s) 261
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmsI GCATC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 3 cut(s) 29, 137, 161
BseSI GKGCMC 1 cut(s) 261
BseX3I CGGCCG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 2 cut(s) 49, 61
BshFI GGCC 3 cut(s) 19, 60, 68
BsiEI CGRYCG 2 cut(s) 49, 61
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 3 cut(s) 19, 60, 68
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 4 cut(s) 29, 61, 96, 106
BspANI GGCC 3 cut(s) 19, 60, 68
BspFNI CGCG 1 cut(s) 106
BspPI GGATC 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMCI CGRYCG 2 cut(s) 49, 61
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 3 cut(s) 19, 60, 68
BtgI CCRYGG 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 56
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 12, 197
CviJI RGCY 4 cut(s) 19, 60, 68, 170
CviKI_1 RGCY 4 cut(s) 19, 60, 68, 170
CviQI GTAC 2 cut(s) 12, 197
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
EclXI CGGCCG 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 68
Eco52I CGGCCG 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 230
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 61
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 3 cut(s) 19, 60, 68
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 2 cut(s) 109, 185
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 16, 43
Hpy166II GTNNAC 3 cut(s) 12, 88, 199
Hpy188I TCNGA 1 cut(s) 249
Hpy8I GTNNAC 3 cut(s) 12, 88, 199
Hpy99I CGWCG 4 cut(s) 80, 89, 209, 212
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 182, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 84
HspAI GCGC 1 cut(s) 237
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 70, 128, 201
LweI GCATC 1 cut(s) 214
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 2 cut(s) 153, 175
MnlI CCTC 8 cut(s) 9, 47, 50, 73, 109, 115, 139, 187
MroNI GCCGGC 1 cut(s) 56
MspI CCGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 57
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 1 cut(s) 33
NgoMIV GCCGGC 1 cut(s) 56
PceI AGGCCT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 84
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 109, 185
PkrI GCNGC 1 cut(s) 62
RsaI GTAC 2 cut(s) 13, 198
RsaNI GTAC 2 cut(s) 12, 197
SalI GTCGAC 1 cut(s) 86
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 261
SetI ASST 1 cut(s) 198
SfaNI GCATC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 153, 175
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 4 cut(s) 29, 61, 96, 106
StuI AGGCCT 1 cut(s) 68
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 78, 87
TasI AATT 2 cut(s) 153, 175
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 109, 185
TspDTI ATGAA 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.