Rh1BG006000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
779959 .. 781780
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG006000.1

Sequence Viewer

Length: 405 bp
ATGCTCTCTCCCAAAGGAAAGAAGCGGCCAACATGGAGGATCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAACTTTAATTATGACTACAAACTTGGAGAAGGACGATTTGGAAGTGTTTACTGGGGTCAGGTTTGGGATGGATCACAAAGATGGAAGATAAAAGAGGAACAGAGGAAAGGGGAAGATCTCGGCGATAATAGACAGCTTACAGCAGTTCTGCCATCAAGGATCAAACCCAGGAGGATAGGTTATTGCTCGCTGCCGAATTGTCCATTTATTTGGGTTCTAAAAGTGCCTTTGGACAAGAATAGAAGCAGGACTACTATGAAGGGATACAGGAAGAAGGCTAACGCAAGCATTGAAGACAATGTGGCCTCATTGACGTTGATGCATGCATAA

Protein Analysis

134

Amino Acids

15.56

Weight (kDa)

10.14

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 47, 154, 242
AcoI YGGCCR 1 cut(s) 26
AgsI TTSAA 2 cut(s) 52, 368
AjnI CCWGG 1 cut(s) 242
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 3 cut(s) 47, 154, 242
AoxI GGCC 2 cut(s) 26, 378
ApeKI GCWGC 2 cut(s) 65, 265
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 77, 252
BccI CCATC 3 cut(s) 137, 150, 235
BciT130I CCWGG 1 cut(s) 244
BciVI GTATCC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 332
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 26, 66, 266
BlsI GCNGC 3 cut(s) 27, 67, 267
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 77, 252
BshFI GGCC 2 cut(s) 28, 380
BsnI GGCC 2 cut(s) 28, 380
Bsp143I GATC 4 cut(s) 39, 146, 190, 234
BspACI CCGC 1 cut(s) 25
BspANI GGCC 2 cut(s) 28, 380
BspPI GGATC 3 cut(s) 47, 154, 242
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 4 cut(s) 39, 146, 190, 234
Bst2UI CCWGG 1 cut(s) 244
BstC8I GCNNGC 4 cut(s) 63, 263, 361, 399
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 4 cut(s) 42, 149, 193, 237
BstMBI GATC 4 cut(s) 39, 146, 190, 234
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 2 cut(s) 65, 401
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 77, 252
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 2 cut(s) 39, 190
BstXI CCANNNNNNTGG 1 cut(s) 285
BstYI RGATCY 2 cut(s) 39, 190
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 28, 380
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 4 cut(s) 63, 263, 361, 399
CviAII CATG 3 cut(s) 33, 62, 398
CviJI RGCY 4 cut(s) 28, 211, 353, 380
CviKI_1 RGCY 4 cut(s) 28, 211, 353, 380
DpnI GATC 4 cut(s) 41, 148, 192, 236
DpnII GATC 4 cut(s) 39, 146, 190, 234
EaeI YGGCCR 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 242
EcoT22I ATGCAT 2 cut(s) 399, 403
FaeI CATG 3 cut(s) 36, 65, 401
FaiI YATR 6 cut(s) 34, 63, 87, 332, 399, 403
FatI CATG 3 cut(s) 32, 61, 397
Fnu4HI GCNGC 3 cut(s) 26, 66, 266
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 26, 66, 266
GluI GCNGC 3 cut(s) 26, 66, 266
HaeIII GGCC 2 cut(s) 28, 380
Hin1II CATG 3 cut(s) 36, 65, 401
Hpy166II GTNNAC 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 4 cut(s) 46, 98, 328, 343
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 61, 65, 397, 401
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 3 cut(s) 36, 65, 401
Kzo9I GATC 4 cut(s) 39, 146, 190, 234
LpnPI CCDG 6 cut(s) 112, 119, 229, 256, 307, 328
Lsp1109I GCAGC 2 cut(s) 77, 252
LweI GCATC 1 cut(s) 384
MaeII ACGT 1 cut(s) 389
MalI GATC 4 cut(s) 41, 148, 192, 236
MboI GATC 4 cut(s) 39, 146, 190, 234
MboII GAAGA 4 cut(s) 172, 200, 358, 380
MflI RGATCY 2 cut(s) 39, 190
MluCI AATT 2 cut(s) 82, 271
MnlI CCTC 5 cut(s) 30, 163, 171, 240, 391
Mph1103I ATGCAT 2 cut(s) 399, 403
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
NdeII GATC 4 cut(s) 39, 146, 190, 234
NlaIII CATG 3 cut(s) 36, 65, 401
NmeAIII GCCGAG 1 cut(s) 174
NsiI ATGCAT 2 cut(s) 399, 403
NspI RCATGY 2 cut(s) 65, 401
PaeI GCATGC 2 cut(s) 65, 401
PkrI GCNGC 3 cut(s) 27, 67, 267
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PsuI RGATCY 2 cut(s) 39, 190
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 3 cut(s) 26, 66, 266
Sau3AI GATC 4 cut(s) 39, 146, 190, 234
ScrFI CCNGG 1 cut(s) 244
SetI ASST 4 cut(s) 138, 213, 256, 392
SfaNI GCATC 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 154
SphI GCATGC 2 cut(s) 65, 401
Sse9I AATT 2 cut(s) 82, 271
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 242
TaiI ACGT 1 cut(s) 392
TasI AATT 2 cut(s) 82, 271
TauI GCSGC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 2 cut(s) 65, 265
TspDTI ATGAA 1 cut(s) 347
XceI RCATGY 2 cut(s) 65, 401
Zsp2I ATGCAT 2 cut(s) 399, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.