Rroxscaffold_7G00198970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000606
Physical Location & Seq
Forward (+)
44768550 .. 44771238
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198970.1

Sequence Viewer

Length: 450 bp
ATGGTGATGGTAGCCACGATTTCGACTCGACTTGCAAAGGCTTTGTTACTAACTTGGTTGCACACGGATGATGGAGGAGGTATAGAGGATGGTGGCTACTCACGGAACTGCATGCAGCAACAAACAACTTTAATCATGACTACAAACTTGGAGAGGGATGATTTGGAAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAGGTTTTAGAGCTGGTAGGTACAAGATCATTTGAAGAGCTGCCATGGTCTTCGATAGGAATAGATGCAGTAATCTGTCTTTTCTTCATAAAAACAGCGAAATACACCCCAATGACTCATGGACCAAATGGACCGTGCACGTGGCTGAGATCGACAATGGCGACAGCCAATGAGTTCTTCACAACGACAAGCATATTTGGCACGACGACGTGCAATAGCTCAAGGAAAGCGACCAATGGTGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.32

Weight (kDa)

5.51

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 204
AcvI CACGTG 1 cut(s) 342
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 236
AjiI CACGTC 1 cut(s) 411
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 4 cut(s) 186, 214, 241, 420
AluI AGCT 4 cut(s) 186, 214, 241, 420
Alw21I GWGCWC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 337
AlwI GGATC 1 cut(s) 204
ApaLI GTGCAC 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 115, 241
AspS9I GGNCC 2 cut(s) 323, 332
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 323, 332
BaeGI GKGCMC 1 cut(s) 341
BbrPI CACGTG 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 127, 228
BccI CCATC 3 cut(s) 65, 83, 187
BfaI CTAG 1 cut(s) 448
BisI GCNGC 2 cut(s) 116, 242
BlsI GCNGC 2 cut(s) 117, 243
Bme18I GGWCC 2 cut(s) 323, 332
BmgBI CACGTC 1 cut(s) 411
BmgT120I GGNCC 2 cut(s) 323, 332
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 4 cut(s) 73, 94, 163, 198
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 2 cut(s) 127, 228
BsiHKAI GWGCWC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 3 cut(s) 196, 227, 350
Bsp19I CCATGG 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 135
BspPI GGATC 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 3 cut(s) 196, 227, 350
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 73, 94, 163, 198
BstKTI GATC 3 cut(s) 199, 230, 353
BstMBI GATC 3 cut(s) 196, 227, 350
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 127, 228
BstV2I GAAGAC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 245
BtrI CACGTC 1 cut(s) 411
BtsCI GGATG 4 cut(s) 73, 94, 163, 198
Cac8I GCNNGC 1 cut(s) 113
CciI TCATGA 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 323, 332
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 112, 136, 246, 320
CviJI RGCY 9 cut(s) 14, 41, 96, 186, 214, 241, 346, 368, 420
CviKI_1 RGCY 9 cut(s) 14, 41, 96, 186, 214, 241, 346, 368, 420
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 347
DpnI GATC 3 cut(s) 198, 229, 352
DpnII GATC 3 cut(s) 196, 227, 350
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 323, 332
Eco72I CACGTG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 4 cut(s) 115, 139, 249, 323
FaiI YATR 7 cut(s) 83, 113, 137, 247, 290, 321, 395
FatI CATG 4 cut(s) 111, 135, 245, 319
Fnu4HI GCNGC 2 cut(s) 116, 242
FokI GGATG 4 cut(s) 80, 101, 170, 205
Fsp4HI GCNGC 2 cut(s) 116, 242
FspBI CTAG 1 cut(s) 448
GluI GCNGC 2 cut(s) 116, 242
Hin1II CATG 4 cut(s) 115, 139, 249, 323
HinfI GANTC 2 cut(s) 25, 316
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 174, 339
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 174, 339
Hpy99I CGWCG 2 cut(s) 409, 412
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4IV ACGT 2 cut(s) 341, 410
HpyCH4V TGCA 7 cut(s) 35, 61, 111, 115, 269, 339, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 341, 410
Hsp92II CATG 4 cut(s) 115, 139, 249, 323
Kzo9I GATC 3 cut(s) 196, 227, 350
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 162, 200
Lsp1109I GCAGC 2 cut(s) 127, 228
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 448
MaeII ACGT 2 cut(s) 341, 410
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 198, 229, 352
MboI GATC 3 cut(s) 196, 227, 350
MboII GAAGA 4 cut(s) 243, 248, 277, 370
MhlI GDGCHC 1 cut(s) 341
MlyI GAGTC 2 cut(s) 19, 310
MnlI CCTC 4 cut(s) 68, 71, 79, 147
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 66, 311
MwoI GCNNNNNNNGC 1 cut(s) 399
NcoI CCATGG 1 cut(s) 245
NdeII GATC 3 cut(s) 196, 227, 350
NlaIII CATG 4 cut(s) 115, 139, 249, 323
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PagI TCATGA 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PkrI GCNGC 2 cut(s) 117, 243
PleI GAGTC 2 cut(s) 19, 310
PmaCI CACGTG 1 cut(s) 342
PmlI CACGTG 1 cut(s) 342
PpsI GAGTC 2 cut(s) 19, 310
Ppu21I YACGTR 1 cut(s) 342
PspCI CACGTG 1 cut(s) 342
PspPI GGNCC 2 cut(s) 323, 332
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 66, 311
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 2 cut(s) 116, 242
Sau3AI GATC 3 cut(s) 196, 227, 350
Sau96I GGNCC 2 cut(s) 323, 332
SchI GAGTC 2 cut(s) 19, 310
SduI GDGCHC 1 cut(s) 341
SetI ASST 9 cut(s) 82, 188, 207, 216, 223, 243, 344, 413, 422
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 2 cut(s) 323, 332
SmiMI CAYNNNNRTG 2 cut(s) 66, 311
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SphI GCATGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 448
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 336
TaiI ACGT 2 cut(s) 344, 413
TaqI TCGA 4 cut(s) 23, 28, 254, 353
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TseI GCWGC 2 cut(s) 115, 241
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 2 cut(s) 80, 118
VneI GTGCAC 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 323, 332
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.