Rh5DG019200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000606
Physical Location & Seq
Reverse (-)
1439324 .. 1439873
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG019200.1

Sequence Viewer

Length: 348 bp
ATGGCGCACGATCTCAACACAAACGAAGATTCAGACGACGTGATGATAGTTGATTGGACTACATATGGCTACATCAATACTCATCCCTCACTCAAAAGTCGAAAACAAACACAGAAAGAAGAGCAGAGCAAAATCAAACAAGAGGAGAAAATTATTATCAAGTTGGTTGACAATTTTGCGGATTCACTTCAGGTACACACCGACGACAATACTGGCATTGATGCAAGAAGTCGCTCACTTCTTCAGAACAAATGTAGGCCTAAATCTGCTAACTGGGTTTTATTTGGCTTAACATCGTTTCTGGGTAACCAAAAGGGAGGCGTGGAAAAACCAAGGCAGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

7.86

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 179
AcuI CTGAAG 2 cut(s) 173, 227
AfaI GTAC 1 cut(s) 195
AjiI CACGTC 1 cut(s) 40
AoxI GGCC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 217, 278
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 217, 278
BseRI GAGGAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 259
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 10, 341
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 259
BspHI TCATGA 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 114
BsrI ACTGG 2 cut(s) 217, 278
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 2 cut(s) 10, 341
BssT1I CCWWGG 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 13, 344
BstMBI GATC 2 cut(s) 10, 341
BstPI GGTNACC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 259
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 82
CciI TCATGA 1 cut(s) 344
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 345
CviJI RGCY 3 cut(s) 69, 259, 288
CviKI_1 RGCY 3 cut(s) 69, 259, 288
CviQI GTAC 1 cut(s) 194
DpnI GATC 2 cut(s) 12, 343
DpnII GATC 2 cut(s) 10, 341
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 259
Eco57I CTGAAG 2 cut(s) 173, 227
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 1 cut(s) 348
FaiI YATR 3 cut(s) 64, 66, 346
FatI CATG 1 cut(s) 344
FauNDI CATATG 1 cut(s) 64
FokI GGATG 1 cut(s) 69
GlaI GCGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 259
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 348
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 29, 182
Hpy166II GTNNAC 2 cut(s) 169, 196
Hpy188I TCNGA 2 cut(s) 34, 246
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 2 cut(s) 169, 196
Hpy99I CGWCG 2 cut(s) 41, 206
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 348
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 10, 341
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 4 cut(s) 176, 198, 259, 287
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 12, 343
MboI GATC 2 cut(s) 10, 341
MboII GAAGA 3 cut(s) 38, 131, 233
MluCI AATT 2 cut(s) 150, 172
MnlI CCTC 3 cut(s) 97, 136, 311
MseI TTAA 1 cut(s) 290
NdeI CATATG 1 cut(s) 64
NdeII GATC 2 cut(s) 10, 341
NlaIII CATG 1 cut(s) 348
PagI TCATGA 1 cut(s) 344
PceI AGGCCT 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 29, 182
PspEI GGTNACC 1 cut(s) 305
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 2 cut(s) 10, 341
SetI ASST 2 cut(s) 42, 195
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 2 cut(s) 150, 172
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 1 cut(s) 179
StuI AGGCCT 1 cut(s) 259
StyI CCWWGG 1 cut(s) 332
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 100
TasI AATT 2 cut(s) 150, 172
TfiI GAWTC 2 cut(s) 29, 182
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.