Rroxscaffold_5G00374070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000606
Physical Location & Seq
Reverse (-)
55149183 .. 55155295
6113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374070.1

Sequence Viewer

Length: 174 bp
ATGGAGGATCTTTTCCTTGAAGTAACTGCATACAACTTCAATTATGACAACAAATTTGGGGAAAGGAGGATTTGGAAGTGTTTATTGTTTTGGGATGGATCACAAGAAAGGAAATCTCAAAAGAGGCTAATGTGCAAGGACAAATGCTTTATACAGGCTGGTGTTCAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.89

Weight (kDa)

8.53

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 15, 106
AcsI RAATTY 1 cut(s) 53
AgsI TTSAA 3 cut(s) 20, 40, 167
AlwI GGATC 2 cut(s) 15, 106
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
BccI CCATC 1 cut(s) 89
BseGI GGATG 1 cut(s) 100
Bsp143I GATC 2 cut(s) 7, 98
BspPI GGATC 2 cut(s) 15, 106
BssMI GATC 2 cut(s) 7, 98
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 2 cut(s) 10, 101
BstMBI GATC 2 cut(s) 7, 98
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtsCI GGATG 1 cut(s) 100
CviJI RGCY 2 cut(s) 127, 158
CviKI_1 RGCY 2 cut(s) 127, 158
DpnI GATC 2 cut(s) 9, 100
DpnII GATC 2 cut(s) 7, 98
FaiI YATR 3 cut(s) 31, 45, 152
FokI GGATG 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 29, 135
Kzo9I GATC 2 cut(s) 7, 98
LpnPI CCDG 2 cut(s) 140, 144
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 9, 100
MboI GATC 2 cut(s) 7, 98
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 40, 53
MnlI CCTC 2 cut(s) 60, 117
NdeII GATC 2 cut(s) 7, 98
PsuI RGATCY 1 cut(s) 7
Sau3AI GATC 2 cut(s) 7, 98
SgeI CNNG 4 cut(s) 29, 116, 148, 167
Sse9I AATT 2 cut(s) 40, 53
TasI AATT 2 cut(s) 40, 53
XapI RAATTY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.