Rh7DG484100
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
68993981 .. 68998381
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG484100.1

Sequence Viewer

Length: 498 bp
ATGGCGCACGATCTCAACACAAACAAAGATTCAGACGACGTGATGACAGTTGATTGGAGTACATATGGCTACATCAATACTCACCCCTCACTCAAAAGTCGAAAACAAACACAGAAAGAAGAGCAGAGCAAAATCAAACAAGAGGAGAAAATTATTATCACGTTGGCTGAAAATTTTGCGGATTCACTTCAGGTACACACCGACGACAATACTGGCATTGATGCAGGAAGTCGCTCACTTCTTCAGAACAAAGGAAAGAAGCAGCCAACATGGAGGATCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAACTTTAATTATGACTACAAACTTGGAGAAGGAGGATTTGGAAGTCTTTACTGGGGTCAGCTTTGGGATGGATCACAAAAACAATACGAACCAGGCACCAATCGACCAACACATGACCATGCCCAAGCAAAATCCACCATCGCGCTCTACTTAGCCCTTGCCACACGTGAACTTGCCAGCGAATAA

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

6.06

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AccII CGCG 1 cut(s) 455
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 284, 391
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 2 cut(s) 173, 227
AcvI CACGTG 1 cut(s) 479
AfaI GTAC 2 cut(s) 61, 195
AflIII ACRYGT 1 cut(s) 476
AgsI TTSAA 1 cut(s) 289
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
AlwI GGATC 2 cut(s) 284, 391
ApeKI GCWGC 2 cut(s) 262, 302
ApoI RAATTY 1 cut(s) 172
AspLEI GCGC 2 cut(s) 7, 457
AsuHPI GGTGA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 479
BbvI GCAGC 2 cut(s) 274, 314
BccI CCATC 2 cut(s) 374, 458
BciT130I CCWGG 1 cut(s) 405
BisI GCNGC 2 cut(s) 263, 303
BlsI GCNGC 2 cut(s) 264, 304
Bme1390I CCNGG 1 cut(s) 405
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 405
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 217, 368
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 385
BseNI ACTGG 2 cut(s) 217, 368
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 274, 314
Bsh1236I CGCG 1 cut(s) 455
BshNI GGYRCC 1 cut(s) 407
Bsp143I GATC 3 cut(s) 10, 276, 383
BspACI CCGC 1 cut(s) 179
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 2 cut(s) 284, 391
BspQI GCTCTTC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 407
BsrI ACTGG 2 cut(s) 217, 368
BssMI GATC 3 cut(s) 10, 276, 383
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 300, 490
BstDEI CTNAG 1 cut(s) 463
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 2 cut(s) 7, 457
BstKTI GATC 3 cut(s) 13, 279, 386
BstMBI GATC 3 cut(s) 10, 276, 383
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 403
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 274, 314
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 436
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 300, 490
CfoI GCGC 2 cut(s) 7, 457
Csp6I GTAC 2 cut(s) 60, 194
CviAII CATG 4 cut(s) 270, 299, 425, 431
CviJI RGCY 5 cut(s) 69, 167, 265, 373, 467
CviKI_1 RGCY 5 cut(s) 69, 167, 265, 373, 467
CviQI GTAC 2 cut(s) 60, 194
DdeI CTNAG 1 cut(s) 463
DpnI GATC 3 cut(s) 12, 278, 385
DpnII GATC 3 cut(s) 10, 276, 383
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 173, 227
Eco72I CACGTG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 4 cut(s) 273, 302, 428, 434
FaiI YATR 7 cut(s) 64, 66, 271, 300, 324, 426, 432
FatI CATG 4 cut(s) 269, 298, 424, 430
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 263, 303
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 263, 303
GlaI GCGC 2 cut(s) 6, 456
GluI GCNGC 2 cut(s) 263, 303
HhaI GCGC 2 cut(s) 7, 457
Hin1II CATG 4 cut(s) 273, 302, 428, 434
Hin6I GCGC 2 cut(s) 5, 455
HinP1I GCGC 2 cut(s) 5, 455
HinfI GANTC 2 cut(s) 29, 182
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 196, 482
Hpy188I TCNGA 2 cut(s) 34, 246
Hpy8I GTNNAC 2 cut(s) 196, 482
Hpy99I CGWCG 2 cut(s) 41, 206
HpyAV CCTTC 2 cut(s) 283, 335
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 3 cut(s) 39, 161, 478
HpyCH4V TGCA 3 cut(s) 224, 298, 302
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 3 cut(s) 39, 161, 478
Hsp92II CATG 4 cut(s) 273, 302, 428, 434
HspAI GCGC 2 cut(s) 5, 455
Kzo9I GATC 3 cut(s) 10, 276, 383
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 6 cut(s) 176, 198, 210, 349, 390, 417
Lsp1109I GCAGC 2 cut(s) 274, 314
LweI GCATC 1 cut(s) 211
MaeII ACGT 3 cut(s) 39, 161, 478
MalI GATC 3 cut(s) 12, 278, 385
MboI GATC 3 cut(s) 10, 276, 383
MboII GAAGA 2 cut(s) 131, 233
MflI RGATCY 1 cut(s) 276
MluCI AATT 3 cut(s) 150, 172, 319
MnlI CCTC 4 cut(s) 97, 136, 267, 338
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 455
NdeI CATATG 1 cut(s) 64
NdeII GATC 3 cut(s) 10, 276, 383
NlaIII CATG 4 cut(s) 273, 302, 428, 434
NlaIV GGNNCC 1 cut(s) 409
NspI RCATGY 1 cut(s) 302
PaeI GCATGC 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 29, 182
PkrI GCNGC 2 cut(s) 264, 304
PmaCI CACGTG 1 cut(s) 479
PmlI CACGTG 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 403
PspCI CACGTG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 409
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 2 cut(s) 61, 195
RsaNI GTAC 2 cut(s) 60, 194
RseI CAYNNNNRTG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 263, 303
Sau3AI GATC 3 cut(s) 10, 276, 383
ScrFI CCNGG 1 cut(s) 405
SetI ASST 5 cut(s) 42, 164, 195, 375, 481
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 429
SphI GCATGC 1 cut(s) 302
Sse9I AATT 3 cut(s) 150, 172, 319
SsiI CCGC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 3 cut(s) 42, 164, 481
TaqI TCGA 2 cut(s) 100, 415
TasI AATT 3 cut(s) 150, 172, 319
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 2 cut(s) 29, 182
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 2 cut(s) 262, 302
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.