Rroxscaffold_6G00419510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000606
Physical Location & Seq
Forward (+)
40966584 .. 40969745
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419510.1

Sequence Viewer

Length: 243 bp
ATGCTGCGGCAGAGGAGAGAAAAAAATGGCAGCAGGGAAAACTGCCAAGGCACGATCTCAAAGCAGACGAAAACTCAAAACGACGTGGGAGTTTATCGGAGTACATATGGCTACATCAGTGCTCACCCATCTCTCAATTTACAGTTCTTGCGAAAGTTAAAAACAACCACAGAAAGAAGAGCAAAGCAGAATCAAACCCAAAAGAAGGAGAAAATTATTATCAAATTGGTTGACAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.35

Weight (kDa)

10.49

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 205
AjiI CACGTC 1 cut(s) 85
Alw21I GWGCWC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 4, 30
AsuHPI GGTGA 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 136
BisI GCNGC 3 cut(s) 5, 8, 31
BlsI GCNGC 3 cut(s) 6, 9, 32
BmgBI CACGTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 144, 236
Bst6I CTCTTC 1 cut(s) 172
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 42
BtrI CACGTC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 124
Csp6I GTAC 1 cut(s) 102
CviJI RGCY 1 cut(s) 111
CviKI_1 RGCY 1 cut(s) 111
CviQI GTAC 1 cut(s) 102
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaiI YATR 2 cut(s) 106, 108
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 5, 8, 31
Fsp4HI GCNGC 3 cut(s) 5, 8, 31
GluI GCNGC 3 cut(s) 5, 8, 31
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 144, 236
HpyCH4IV ACGT 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 84
Kzo9I GATC 1 cut(s) 54
LguI GCTCTTC 1 cut(s) 172
LpnPI CCDG 1 cut(s) 19
Lsp1109I GCAGC 1 cut(s) 42
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 136, 213, 224
MnlI CCTC 1 cut(s) 6
MseI TTAA 1 cut(s) 158
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 6, 9, 32
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 3 cut(s) 5, 8, 31
Sau3AI GATC 1 cut(s) 54
SduI GDGCHC 1 cut(s) 124
SetI ASST 1 cut(s) 87
SgeI CNNG 5 cut(s) 46, 59, 64, 97, 160
Sse9I AATT 3 cut(s) 136, 213, 224
SsiI CCGC 1 cut(s) 7
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 144, 236
TaiI ACGT 1 cut(s) 87
TasI AATT 3 cut(s) 136, 213, 224
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 124
TseI GCWGC 2 cut(s) 4, 30
TspRI CASTG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.