Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000606

Physical Location & Seq

Genomic Coordinates Forward (+)

9747722 .. 9749587

Gene Structure 1866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0114200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCAAAGTCGAAGCTGATGATGCTTTTTGTTTCATTTTGTTTGTTATCTGTGTTTAGTGCATTTGAGGTAGTTTCTCCTGCGGCCATTTTTATATTTGGAGACTCAACTGTGGATGTTGGCACCAATACCTTGTTGCTCCAAAGTGGAGCAAGGGCTGATTTCTCTCCAAATGGGGTTGATTTTCCTTATTCTGTGCCTACTGGGAGGTTCAGCAATGGCCTTAACAGCGCTGATCAAATCGTGAAACTATTTGGATGCCATTGCCAGAAAAGTCCACCACCTTTCCTGTATGCTGCGAGTCATATGTCCACTTTTAAAAGGGATATACTGCAGGGTGTCAACTTTGCTTCAGCAGGAAGCGGCATCTTCCAAGACACGGGAATAAAAAGATGGACAGAAGTTGTGTCACTGGGAAATCAGATCCAACAATTTGCAGCGGTGCGTGGAAATTTCACAGAGATGGTTGGTTTCAAAACAACCGATACCGTGCTTTCCAAGTCTTTGTTCATCATCAGTATCGGAAGCAACAATCTTTTCGAATTAGTTGAGTACTTTCCAAATGCCACGGACTTGTATAAGGCGAAACTCATGGAACGTCTTCAGCTAATGTACAAGAATCATTTGAAGGTGTGTGTCAATTACTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

217

Amino Acids

23.97

Weight (kDa)

8.66

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 196	9.3e-08	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica	MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica	Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis	pycom02g07340 pycom15g19370
rosa_chinensis	RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata	RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora	Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii	Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa	Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha	Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana	Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	3 cut(s)	83, 363, 440
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	2 cut(s)	336, 587
AfaI	GTAC	2 cut(s)	554, 614
AfeI	AGCGCT	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	475, 628
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	2 cut(s)	16, 607
AluI	AGCT	2 cut(s)	16, 607
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	418
Aor51HI	AGCGCT	1 cut(s)	232
AoxI	GGCC	2 cut(s)	84, 220
ApeKI	GCWGC	2 cut(s)	296, 437
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	283, 449
BccI	CCATC	2 cut(s)	387, 457
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	4 cut(s)	84, 297, 364, 438
BlsI	GCNGC	4 cut(s)	85, 298, 365, 439
BmcAI	AGTACT	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	124
BmrI	ACTGGG	2 cut(s)	213, 422
BmsI	GCATC	3 cut(s)	12, 248, 375
BmuI	ACTGGG	2 cut(s)	213, 422
BpiI	GAAGAC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	208, 417
Bse3DI	GCAATG	2 cut(s)	223, 262
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	121, 263
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	2 cut(s)	223, 262
BseNI	ACTGG	2 cut(s)	208, 417
BseXI	GCAGC	2 cut(s)	283, 449
BshFI	GGCC	2 cut(s)	86, 222
BshNI	GGYRCC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	86, 222
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	235, 423
BspACI	CCGC	3 cut(s)	83, 363, 440
BspANI	GGCC	2 cut(s)	86, 222
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	418
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	223, 262
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	208, 417
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	235, 423
Bst4CI	ACNGT	2 cut(s)	112, 490
BstAUI	TGTACA	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	121, 263
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	238, 426
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	235, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 228
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	283, 449
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	86, 222
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	121, 263
BtsIMutI	CAGTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	553, 613
CviAII	CATG	1 cut(s)	592
CviJI	RGCY	5 cut(s)	16, 86, 158, 222, 607
CviKI_1	RGCY	5 cut(s)	16, 86, 158, 222, 607
CviQI	GTAC	2 cut(s)	553, 613
DpnI	GATC	2 cut(s)	237, 425
DpnII	GATC	2 cut(s)	235, 423
DraI	TTTAAA	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	84
Eco47III	AGCGCT	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	336, 587
FaeI	CATG	1 cut(s)	595
FaiI	YATR	9 cut(s)	95, 294, 306, 308, 329, 579, 593, 650, 652
FatI	CATG	1 cut(s)	591
FauNDI	CATATG	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	84, 297, 364, 438
FokI	GGATG	2 cut(s)	128, 270
Fsp4HI	GCNGC	4 cut(s)	84, 297, 364, 438
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	4 cut(s)	84, 297, 364, 438
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	86, 222
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	3 cut(s)	104, 301, 619
Hpy166II	GTNNAC	3 cut(s)	278, 312, 343
Hpy188I	TCNGA	2 cut(s)	423, 524
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	278, 312, 343
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	2 cut(s)	112, 490
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	62, 334, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 228
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	235, 423
LmnI	GCTCC	2 cut(s)	144, 149
LpnPI	CCDG	7 cut(s)	93, 189, 281, 302, 320, 342, 398
Lsp1109I	GCAGC	2 cut(s)	283, 449
LweI	GCATC	3 cut(s)	12, 248, 375
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	2 cut(s)	237, 425
MboI	GATC	2 cut(s)	235, 423
MboII	GAAGA	2 cut(s)	361, 593
MflI	RGATCY	1 cut(s)	423
MluCI	AATT	4 cut(s)	431, 451, 542, 640
MlyI	GAGTC	2 cut(s)	98, 310
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	2 cut(s)	61, 201
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	2 cut(s)	225, 318
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	22, 228
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	2 cut(s)	235, 423
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	619
PkrI	GCNGC	4 cut(s)	85, 298, 365, 439
PleI	GAGTC	2 cut(s)	98, 309
PpsI	GAGTC	2 cut(s)	98, 309
PspN4I	GGNNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	2 cut(s)	554, 614
RsaNI	GTAC	2 cut(s)	553, 613
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	225, 318
SatI	GCNGC	4 cut(s)	84, 297, 364, 438
Sau3AI	GATC	2 cut(s)	235, 423
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	2 cut(s)	98, 310
SetI	ASST	8 cut(s)	18, 72, 134, 212, 286, 601, 609, 633
SfaNI	GCATC	3 cut(s)	12, 248, 375
SfcI	CTRYAG	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	4 cut(s)	431, 451, 542, 640
SsiI	CCGC	3 cut(s)	83, 363, 440
TaaI	ACNGT	2 cut(s)	112, 490
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	2 cut(s)	11, 540
TasI	AATT	4 cut(s)	431, 451, 542, 640
TatI	WGTACW	2 cut(s)	552, 612
TauI	GCSGC	2 cut(s)	86, 366
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	2 cut(s)	225, 318
Tru9I	TTAA	2 cut(s)	225, 318
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	2 cut(s)	296, 437
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	24, 499
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.