Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000606

Physical Location & Seq

Genomic Coordinates Forward (+)

25980912 .. 25983185

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAAGAAAATATAAAAACGGAACTACGAAATTGTGCAGCGAGAGAACAGAAAGAGAAAAAAGAAAAAACGGATCGCACGCAGTCGCACACGATCCGCAGACGAGAGAGAACTGCCATGGCGCACGATCTCAACACAAACGAAGATTCGGACGACGTGATGACAGTTGATTGGAGAAAGAAGCAGCCAACATGGAGGATCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAACTTTAATTATGACTACAAACTTGGAGAAGGAGGATTTGGAAGTGTTTCTTGGGGTCAGCTTTGGGATGGATCACAAAAATACACCCCAACGACTCATGGACCAAATGGATCGTGCACGTGGCCGAGATCGACAATGGCCACAGCCAATGAGTTCTTCACAACGACAAGCATATTTGGCACGACGACGTGCAATAGCTCAAGGAAAGCGACCAATGGTGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

153

Amino Acids

17.45

Weight (kDa)

9.22

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica	MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica	Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis	pycom02g07340 pycom15g19370
rosa_chinensis	RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata	RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora	Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii	Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa	Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha	Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana	Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	5 cut(s)	81, 88, 206, 313, 352
AcoI	YGGCCR	2 cut(s)	356, 372
AcvI	CACGTG	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	2 cut(s)	157, 423
AjuI	GAANNNNNNNTTGG	6 cut(s)	255, 268, 287, 300, 374, 406
AluBI	AGCT	2 cut(s)	295, 432
AluI	AGCT	2 cut(s)	295, 432
Alw21I	GWGCWC	1 cut(s)	353
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	5 cut(s)	81, 88, 206, 313, 352
AoxI	GGCC	2 cut(s)	356, 372
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	38, 184, 224
Asp700I	GAANNNNTTC	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	374
BbrPI	CACGTG	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	50, 196, 236
BccI	CCATC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	460
BisI	GCNGC	3 cut(s)	39, 185, 225
BlsI	GCNGC	3 cut(s)	40, 186, 226
Bme18I	GGWCC	1 cut(s)	335
BmgBI	CACGTC	2 cut(s)	157, 423
BmgT120I	GGNCC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	418
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	50, 196, 236
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	358, 374
BsiHKAI	GWGCWC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	358, 374
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	358, 374
BspPI	GGATC	5 cut(s)	81, 88, 206, 313, 352
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	80, 222
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	7 cut(s)	76, 96, 130, 201, 308, 347, 365
BstMBI	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	50, 196, 236
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	358, 374
BtgI	CCRYGG	1 cut(s)	117
BtrI	CACGTC	2 cut(s)	157, 423
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	80, 222
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	4 cut(s)	118, 192, 221, 332
CviJI	RGCY	6 cut(s)	187, 295, 358, 374, 380, 432
CviKI_1	RGCY	6 cut(s)	187, 295, 358, 374, 380, 432
DpnI	GATC	7 cut(s)	75, 95, 129, 200, 307, 346, 364
DpnII	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
EaeI	YGGCCR	2 cut(s)	356, 372
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	335
Eco72I	CACGTG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	121, 195, 224, 335
FaiI	YATR	7 cut(s)	14, 119, 193, 222, 246, 333, 407
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	4 cut(s)	117, 191, 220, 331
Fnu4HI	GCNGC	3 cut(s)	39, 185, 225
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	39, 185, 225
FspBI	CTAG	1 cut(s)	460
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	39, 185, 225
HaeIII	GGCC	2 cut(s)	358, 374
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	4 cut(s)	121, 195, 224, 335
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	2 cut(s)	146, 328
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	3 cut(s)	158, 421, 424
HpyAV	CCTTC	2 cut(s)	205, 257
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	156, 353, 422
HpyCH4V	TGCA	5 cut(s)	38, 220, 224, 351, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpySE526I	ACGT	3 cut(s)	156, 353, 422
Hsp92II	CATG	4 cut(s)	121, 195, 224, 335
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
Lsp1109I	GCAGC	3 cut(s)	50, 196, 236
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	3 cut(s)	156, 353, 422
MalI	GATC	7 cut(s)	75, 95, 129, 200, 307, 346, 364
MboI	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
MboII	GAAGA	2 cut(s)	155, 382
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	31, 241
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	2 cut(s)	189, 260
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
NlaIII	CATG	4 cut(s)	121, 195, 224, 335
NmeAIII	GCCGAG	1 cut(s)	384
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	40, 186, 226
PleI	GAGTC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	354
PmlI	CACGTG	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	354
PspCI	CACGTG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	39, 185, 225
Sau3AI	GATC	7 cut(s)	73, 93, 127, 198, 305, 344, 362
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	5 cut(s)	159, 297, 356, 425, 434
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	31, 241
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	159, 356, 425
TaqI	TCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	31, 241
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	3 cut(s)	38, 184, 224
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	35, 86
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.