Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000606

Physical Location & Seq

Genomic Coordinates Reverse (-)

7905054 .. 7905912

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTGGTACTTCTTTGGTGTGATTGTAGAATGTAAAATTTGGAATGCAGATTTCACTCCCCTAATTGAAGCCTTCAACTATGTAAGTACCCTCCAACTCCAAGGCCATCTCATACTCTCCCCAACTATAATCACAGTGCCCAAAAATGGAGTCTCTTTCTTGTGCTATTTGCCTATTTCAACGCTAGCAGTAATCTTTGCTACTCTGACCTTCCTCTCAAAAGTTCTCTTCCCCAAAAGCCACAAACTGAATCTGAAATTTCCACCCGGTCCAAAACCCTGGCCGATCATTGGCAACCTCAACCTCATTGGTCCTCTCCCTCATCAATCCCTTCACAAATTATCCCAAACTACTTATGAAACAATAATGCAGCTTAAGTTTGGCTCCTACCCAGTTGTTATTGCTTCATCTCCAGAAATAGCAAAGAGGACGCATGATCATGTGTTTGCCTCCAGACCCCAAGCTGCAGCTGGCAAGTACACCACTTACAACTACCTCAACATCAGTTGGGCACCTCACGGCCCATATTGGCGCCAAGGCCGCAAAATCTACCTCTCCGAGCTATTCAACTCGAAGAGACTAGACTCTTTTGAGTACATTCGTGTGGAGGAAACTCGCGCTTTCCTCTCGCAGCTATGTGCCTTGTCAGGCAAGCCAGTCACCCTCAAGGAGCACCTCTCACGCCTCACTCTCAGCATTATATATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

236

Amino Acids

26.89

Weight (kDa)

9.64

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	88 - 235	2.2e-18	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica	MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica	Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis	pycom02g07340 pycom15g19370
rosa_chinensis	RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata	RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora	Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii	Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa	Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha	Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana	Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	511, 531
AccII	CGCG	1 cut(s)	618
AciI	CCGC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	36, 257
AcyI	GRCGYC	1 cut(s)	532
AfaI	GTAC	4 cut(s)	8, 88, 479, 596
AfiI	CCNNNNNNNGG	2 cut(s)	146, 290
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	68, 76, 180, 568
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	5 cut(s)	373, 464, 470, 562, 634
AluI	AGCT	5 cut(s)	373, 464, 470, 562, 634
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	2 cut(s)	157, 571
AoxI	GGCC	4 cut(s)	103, 281, 520, 538
ApeKI	GCWGC	4 cut(s)	370, 464, 467, 631
ApoI	RAATTY	2 cut(s)	36, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	2 cut(s)	534, 620
AspS9I	GGNCC	3 cut(s)	269, 311, 521
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	652
AsuNHI	GCTAGC	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	269, 311
BaeGI	GKGCMC	2 cut(s)	141, 514
BanI	GGYRCC	2 cut(s)	511, 531
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	382, 451, 479, 643
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	157, 571
BfaI	CTAG	2 cut(s)	185, 581
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	535
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	5 cut(s)	371, 465, 468, 541, 632
BlsI	GCNGC	5 cut(s)	372, 466, 469, 542, 633
Bme1390I	CCNGG	2 cut(s)	267, 280
Bme18I	GGWCC	2 cut(s)	269, 311
BmgT120I	GGNCC	3 cut(s)	269, 311, 521
BmiI	GGNNCC	3 cut(s)	385, 513, 533
BmrFI	CCNGG	2 cut(s)	267, 280
BmrI	ACTGGG	1 cut(s)	386
BmtI	GCTAGC	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BpmI	CTGGAG	2 cut(s)	396, 436
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	100, 278, 535
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 290
Bse1I	ACTGG	2 cut(s)	392, 656
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	100, 278, 535
BseLI	CCNNNNNNNGG	2 cut(s)	146, 290
BseMII	CTCAG	1 cut(s)	706
BseNI	ACTGG	2 cut(s)	392, 656
BseSI	GKGCMC	2 cut(s)	141, 514
BseXI	GCAGC	4 cut(s)	382, 451, 479, 643
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	4 cut(s)	105, 283, 522, 540
BshNI	GGYRCC	2 cut(s)	511, 531
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	146, 290
BsmAI	GTCTC	2 cut(s)	157, 571
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	105, 283, 522, 540
Bsp1286I	GDGCHC	3 cut(s)	141, 514, 675
Bsp143I	GATC	2 cut(s)	285, 436
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	4 cut(s)	105, 283, 522, 540
BspCNI	CTCAG	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	3 cut(s)	385, 513, 533
BspMAI	CTGCAG	1 cut(s)	469
BspOI	GCTAGC	1 cut(s)	188
BspT107I	GGYRCC	2 cut(s)	511, 531
BspTI	CTTAAG	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	392, 656
BssECI	CCNNGG	3 cut(s)	100, 278, 535
BssMI	GATC	2 cut(s)	285, 436
BssNI	GRCGYC	1 cut(s)	532
BssT1I	CCWWGG	2 cut(s)	100, 535
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	233, 569
BstACI	GRCGYC	1 cut(s)	532
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	186, 472, 653
BstDEI	CTNAG	1 cut(s)	692
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	2 cut(s)	534, 620
BstKTI	GATC	2 cut(s)	288, 439
BstMAI	GTCTC	2 cut(s)	157, 571
BstMBI	GATC	2 cut(s)	285, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	2 cut(s)	265, 278
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	2 cut(s)	141, 514
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	4 cut(s)	382, 451, 479, 643
BstXI	CCANNNNNNTGG	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	105, 283, 522, 540
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	186, 472, 653
CfoI	GCGC	2 cut(s)	534, 620
Cfr13I	GGNCC	3 cut(s)	269, 311, 521
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	4 cut(s)	7, 87, 478, 595
CviAII	CATG	2 cut(s)	434, 440
CviQI	GTAC	4 cut(s)	7, 87, 478, 595
DdeI	CTNAG	1 cut(s)	692
DinI	GGCGCC	1 cut(s)	533
DpnI	GATC	2 cut(s)	287, 438
DpnII	GATC	2 cut(s)	285, 436
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	233, 569
EarI	CTCTTC	2 cut(s)	233, 569
Eco130I	CCWWGG	2 cut(s)	100, 535
Eco47I	GGWCC	2 cut(s)	269, 311
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	2 cut(s)	100, 535
EgeI	GGCGCC	1 cut(s)	533
EheI	GGCGCC	1 cut(s)	533
ErhI	CCWWGG	2 cut(s)	100, 535
FaeI	CATG	2 cut(s)	437, 443
FatI	CATG	2 cut(s)	433, 439
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	5 cut(s)	371, 465, 468, 541, 632
Fsp4HI	GCNGC	5 cut(s)	371, 465, 468, 541, 632
FspBI	CTAG	2 cut(s)	185, 581
GlaI	GCGC	2 cut(s)	533, 619
GluI	GCNGC	5 cut(s)	371, 465, 468, 541, 632
GsuI	CTGGAG	2 cut(s)	396, 436
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	4 cut(s)	105, 283, 522, 540
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	2 cut(s)	534, 620
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	437, 443
Hin6I	GCGC	2 cut(s)	532, 618
HinP1I	GCGC	2 cut(s)	532, 618
HinfI	GANTC	3 cut(s)	150, 250, 584
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	3 cut(s)	207, 255, 559
Hpy188III	TCNNGA	2 cut(s)	413, 453
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	3 cut(s)	82, 220, 341
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	47, 370, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	1 cut(s)	692
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	437, 443
HspAI	GCGC	2 cut(s)	532, 618
KasI	GGCGCC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	285, 436
LmnI	GCTCC	2 cut(s)	389, 670
LpnPI	CCDG	9 cut(s)	265, 280, 292, 405, 426, 456, 466, 633, 669
Lsp1109I	GCAGC	4 cut(s)	382, 451, 479, 643
MaeI	CTAG	2 cut(s)	185, 581
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	2 cut(s)	287, 438
MboI	GATC	2 cut(s)	285, 436
MboII	GAAGA	2 cut(s)	220, 586
MhlI	GDGCHC	3 cut(s)	141, 514, 675
MluCI	AATT	4 cut(s)	36, 63, 257, 338
Mly113I	GGCGCC	1 cut(s)	532
MlyI	GAGTC	2 cut(s)	159, 578
MmeI	TCCRAC	1 cut(s)	118
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	2 cut(s)	438, 602
MspA1I	CMGCKG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	267, 280
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	540
NarI	GGCGCC	1 cut(s)	532
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	285, 436
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	437, 443
NlaIV	GGNNCC	3 cut(s)	385, 513, 533
NmuCI	GTSAC	1 cut(s)	658
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	372, 466, 469, 542, 633
PleI	GAGTC	2 cut(s)	158, 578
PluTI	GGCGCC	1 cut(s)	535
PpsI	GAGTC	2 cut(s)	158, 578
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	3 cut(s)	385, 513, 533
PspPI	GGNCC	3 cut(s)	269, 311, 521
PstI	CTGCAG	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	8, 88, 479, 596
RsaNI	GTAC	4 cut(s)	7, 87, 478, 595
RseI	CAYNNNNRTG	2 cut(s)	438, 602
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	371, 465, 468, 541, 632
Sau3AI	GATC	2 cut(s)	285, 436
Sau96I	GGNCC	3 cut(s)	269, 311, 521
SchI	GAGTC	2 cut(s)	159, 578
ScrFI	CCNGG	2 cut(s)	267, 280
SduI	GDGCHC	3 cut(s)	141, 514, 675
SfcI	CTRYAG	1 cut(s)	465
SfoI	GGCGCC	1 cut(s)	533
SinI	GGWCC	2 cut(s)	269, 311
SmiMI	CAYNNNNRTG	2 cut(s)	438, 602
SmlI	CTYRAG	2 cut(s)	374, 665
SmoI	CTYRAG	2 cut(s)	374, 665
Sse9I	AATT	4 cut(s)	36, 63, 257, 338
SsiI	CCGC	1 cut(s)	541
SspDI	GGCGCC	1 cut(s)	531
SspMI	CTAG	2 cut(s)	185, 581
StyD4I	CCNGG	2 cut(s)	265, 278
StyI	CCWWGG	2 cut(s)	100, 535
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	572
TasI	AATT	4 cut(s)	36, 63, 257, 338
TatI	WGTACW	2 cut(s)	477, 594
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	4 cut(s)	370, 464, 467, 631
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	372, 396
TspRI	CASTG	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	269, 311
XapI	RAATTY	2 cut(s)	36, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XspI	CTAG	2 cut(s)	185, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.