Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000606

Physical Location & Seq

Genomic Coordinates Reverse (-)

19776300 .. 19780465

Gene Structure 4166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAGGTAAAAACAAGAAAAAAAGAAAAAGAAAAAAAGCAGCCAACATGGATGCTCTTTACCTTGAAGGAACTTACAGCAACAAACAACTTCAATTATGACAGCAAATTTAGGGAATTGAGGAGCTGGCAGTGTTTACAAGGTCAGTTTTGGGATAGAGAACAGCATCTAAAATTGGTGTTGTCCTTCATGATTCCTAGCGAATTGCTCAGGTACAAGCTGTTGCTTGAAAAGAAGTGTTTAAAAGTGGTCTGCCTCAAAGATTACAAATTCCTTCAGAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

96

Amino Acids

11.7

Weight (kDa)

9.85

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica	MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica	Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis	pycom02g07340 pycom15g19370
rosa_chinensis	RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata	RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora	Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii	Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa	Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha	Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana	Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	107, 269
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	67, 94, 230
AluBI	AGCT	2 cut(s)	126, 220
AluI	AGCT	2 cut(s)	126, 220
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	107, 269
BbvI	GCAGC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
BmsI	GCATC	2 cut(s)	42, 175
Bpu10I	CCTNAGC	1 cut(s)	209
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	48, 190
CviJI	RGCY	3 cut(s)	43, 126, 220
CviKI_1	RGCY	3 cut(s)	43, 126, 220
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	209
DraI	TTTAAA	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	260
FaeI	CATG	2 cut(s)	51, 193
FaiI	YATR	4 cut(s)	49, 99, 191, 286
FatI	CATG	2 cut(s)	47, 189
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	51, 193
HinfI	GANTC	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	61, 196, 284
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	51, 193
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	2 cut(s)	112, 196
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	42, 175
MaeI	CTAG	1 cut(s)	198
MluCI	AATT	6 cut(s)	94, 107, 116, 173, 203, 269
MnlI	CCTC	2 cut(s)	114, 266
MseI	TTAA	1 cut(s)	242
NlaIII	CATG	2 cut(s)	51, 193
PagI	TCATGA	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	1 cut(s)	41
SetI	ASST	6 cut(s)	9, 65, 128, 145, 215, 222
SfaNI	GCATC	2 cut(s)	42, 175
Sse9I	AATT	6 cut(s)	94, 107, 116, 173, 203, 269
SspMI	CTAG	1 cut(s)	198
TasI	AATT	6 cut(s)	94, 107, 116, 173, 203, 269
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	17, 178
TspRI	CASTG	1 cut(s)	137
XapI	RAATTY	2 cut(s)	107, 269
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.