Rh6AG073600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000606
Physical Location & Seq
Reverse (-)
10430323 .. 10470043
39721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG073600.1

Sequence Viewer

Length: 492 bp
ATGTCTGGGAGGGTGATTCGAGCTCAGGTCTATGGGAGAGTAATTTGGACTCATGAGTTGTTGATTCAACCTCAAGATAACATAAAAGAAGCGGGAAGTACAGAGACACCGGGCAGCTCTCCAAAGATAAATAGCATTGCTATTCAGATAACAGTTACACGCACACGTAGATCTATCATGAGTATCACCTACAATAATTATGGTGTGGAATTCAATATTTTGATATTAGTGACATATAATTTTACTATCGTGCGAGTTTTGTTACTTTTTCCCATTTATCTCAACCTATGCAGGACTTTGGAATATGAAGTTGCTGATTCTTTGATTTTATATCATCCACATGTCTATAAGAGGAATGATTTTCAATGGAACTTCTATTCTTTTTCTACAATAATGGACACAACCTTCAGATCAGGGTATGAAAATCTTTATTTGGTGATCGGTACCGACTTTCAAAAATCAACATTCAGGGTACAAAAGGGGGATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

19.02

Weight (kDa)

9.21

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 391
AfaI GTAC 3 cut(s) 100, 445, 474
AflIII ACRYGT 2 cut(s) 164, 340
AgsI TTSAA 4 cut(s) 68, 214, 365, 455
AluBI AGCT 2 cut(s) 23, 117
AluI AGCT 2 cut(s) 23, 117
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 25, 178, 448
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 126
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 98
BglII AGATCT 1 cut(s) 170
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 135
BseGI GGATG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 170, 410, 438
BspACI CCGC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 37
BspHI TCATGA 2 cut(s) 52, 177
BspLI GGNNCC 1 cut(s) 445
BspT107I GGYRCC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 135
BssMI GATC 3 cut(s) 170, 410, 438
Bst4CI ACNGT 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 3 cut(s) 173, 413, 441
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 170, 410, 438
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BtsCI GGATG 1 cut(s) 334
CciI TCATGA 2 cut(s) 52, 177
Csp6I GTAC 3 cut(s) 99, 444, 473
CviAII CATG 3 cut(s) 53, 178, 341
CviJI RGCY 2 cut(s) 23, 117
CviKI_1 RGCY 2 cut(s) 23, 117
CviQI GTAC 3 cut(s) 99, 444, 473
DdeI CTNAG 1 cut(s) 24
DpnI GATC 3 cut(s) 172, 412, 440
DpnII GATC 3 cut(s) 170, 410, 438
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 3 cut(s) 56, 181, 344
FatI CATG 3 cut(s) 52, 177, 340
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
HapII CCGG 1 cut(s) 110
Hin1II CATG 3 cut(s) 56, 181, 344
HinfI GANTC 4 cut(s) 16, 49, 64, 317
HpaII CCGG 1 cut(s) 110
HphI GGTGA 3 cut(s) 25, 178, 448
Hpy188I TCNGA 2 cut(s) 147, 410
Hpy188III TCNNGA 3 cut(s) 53, 74, 178
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 3 cut(s) 56, 181, 344
KpnI GGTACC 1 cut(s) 447
Kzo9I GATC 3 cut(s) 170, 410, 438
LpnPI CCDG 5 cut(s) 11, 123, 277, 399, 454
Lsp1109I GCAGC 1 cut(s) 126
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 3 cut(s) 154, 229, 261
MalI GATC 3 cut(s) 172, 412, 440
MboI GATC 3 cut(s) 170, 410, 438
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 4 cut(s) 42, 196, 209, 238
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 3 cut(s) 3, 81, 345
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 111
NdeII GATC 3 cut(s) 170, 410, 438
NlaIII CATG 3 cut(s) 56, 181, 344
NlaIV GGNNCC 1 cut(s) 445
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 344
PagI TCATGA 2 cut(s) 52, 177
PciI ACATGT 1 cut(s) 340
PfeI GAWTC 3 cut(s) 16, 64, 317
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 167
PscI ACATGT 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 445
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 3 cut(s) 100, 445, 474
RsaNI GTAC 3 cut(s) 99, 444, 473
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 25
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 3 cut(s) 170, 410, 438
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 25
SetI ASST 8 cut(s) 25, 30, 73, 119, 169, 191, 288, 407
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 4 cut(s) 42, 196, 209, 238
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 217
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 42, 196, 209, 238
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 3 cut(s) 16, 64, 317
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 321, 435
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.