Rh4DG392900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000606
Physical Location & Seq
Forward (+)
60911523 .. 60912771
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG392900.1

Sequence Viewer

Length: 342 bp
ATGCAGTCGCACACGATCTGCAAACCACAGATAACTGCCAAGGAGCACGATCTAAACACAAACGAAGATTCAGACGTCGTGGGAGTTGATCGGAGTACATATGGCTCCAACAATACTCATCCCTCACTCAATTTACTGTTCATACAGAAAGAGGAGCAGAAAGAGGAGGGGAATTGTTTATCAAGTCGGCTGACAATTTTGCAGATTCACCTAAGGCACAGAGCAACGACGATACTGGCATTGATGCAGGAAGTGGCGCAATTCTTAAGAACAAAGATTGTGAATATTGTCTCAAGAATACAAACATGGCAAAGAGAACAGATGCAGGACTTTGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.03

Weight (kDa)

6.5

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 97
AflII CTTAAG 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 295
AspLEI GCGC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 295
BfrI CTTAAG 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 2 cut(s) 234, 312
BpuEI CTTGAG 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 167, 179
BsiHKAI GWGCWC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 3 cut(s) 15, 49, 88
BspLI GGNNCC 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 3 cut(s) 15, 49, 88
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 18, 52, 91
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 3 cut(s) 15, 49, 88
Bsu36I CCTNAGG 1 cut(s) 212
BtsCI GGATG 1 cut(s) 118
CfoI GCGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 306
CviJI RGCY 2 cut(s) 105, 190
CviKI_1 RGCY 2 cut(s) 105, 190
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 17, 51, 90
DpnII GATC 3 cut(s) 15, 49, 88
Eco130I CCWWGG 1 cut(s) 39
Eco81I CCTNAGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 309
FaiI YATR 5 cut(s) 100, 102, 143, 307, 340
FatI CATG 1 cut(s) 305
FauNDI CATATG 1 cut(s) 100
FokI GGATG 1 cut(s) 105
GlaI GCGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 2 cut(s) 68, 205
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 73, 93
Hpy188III TCNNGA 1 cut(s) 294
Hpy99I CGWCG 2 cut(s) 80, 232
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 4, 21, 202, 247, 325
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 3 cut(s) 15, 49, 88
LmnI GCTCC 3 cut(s) 43, 110, 154
LpnPI CCDG 3 cut(s) 221, 233, 311
LweI GCATC 2 cut(s) 234, 312
MaeII ACGT 1 cut(s) 75
MalI GATC 3 cut(s) 17, 51, 90
MboI GATC 3 cut(s) 15, 49, 88
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 4 cut(s) 130, 172, 195, 260
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 133, 145, 157, 160
MseI TTAA 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 265
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 15, 49, 88
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 68, 205
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 3 cut(s) 15, 49, 88
SduI GDGCHC 1 cut(s) 48
SetI ASST 2 cut(s) 78, 213
SfaNI GCATC 2 cut(s) 234, 312
SmlI CTYRAG 2 cut(s) 265, 292
SmoI CTYRAG 2 cut(s) 265, 292
Sse9I AATT 4 cut(s) 130, 172, 195, 260
SspI AATATT 1 cut(s) 286
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 78
TasI AATT 4 cut(s) 130, 172, 195, 260
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 2 cut(s) 68, 205
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 265
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.