RchiOBHm_Chr6g0297411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000606
Physical Location & Seq
Forward (+)
59110230 .. 59112217
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26693

Sequence Viewer

Length: 558 bp
ATGCCGGAGAGCTTCGCGGCGGAGATTCTAGACCTGTCCCACTCTCTCTTGAAGCTTCTCAATCTGGATCTGGCATATCGCTGGACCATCAACCATCGTCTTCTCTTTTTCCTGGCATTCGCTATCTTATTATCTTTTCATTTTATTCTTCTGTTGAAGTTTACAACTTTGGGGCTCGTATCTTATCTTTATATTCTTTTTTACAGCCATGGATTCTTCTTTTCAAAACCAAAGAAGGCTACTTTTCTACTGTCATCGCACAGAGTTGGTATTCAAGATTATGAATTTCCTGAAGCCAAGATTGGAATATTGTCTCAAGAATACAAACATGGCAAAGAGAACAGATGCAGGACTTTGGAATATGAAGTTGCTTTGGAAGGATTTAGTTATGTGTTTCTTTTTTACAATTATGAGCTCTGGGATCTTAACATTTCAGGGGAGAAACTTGAAGAAATATGTATACGCTGGGAATTTGATTCGAGTGATGATTCAAGATGTGGAATTTATTGTACTCTGCGTTGGTCAATTCATGATTTTTTGGAAGGATTTTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.95

Weight (kDa)

5.62

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 460
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 17, 20
AclWI GGATC 2 cut(s) 75, 429
AcsI RAATTY 3 cut(s) 284, 470, 501
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 511
AgsI TTSAA 6 cut(s) 52, 157, 225, 275, 449, 492
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 12, 55, 415
AluI AGCT 3 cut(s) 12, 55, 415
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 2 cut(s) 75, 429
ApoI RAATTY 3 cut(s) 284, 470, 501
AspS9I GGNCC 1 cut(s) 84
AvaII GGWCC 1 cut(s) 84
BanII GRGCYC 2 cut(s) 177, 417
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 417
BccI CCATC 2 cut(s) 95, 102
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 177, 417
Bsp143I GATC 2 cut(s) 67, 421
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 2 cut(s) 17, 20
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 529
BspPI GGATC 2 cut(s) 75, 429
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 67, 421
BssNAI GTATAC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 208
Bst1107I GTATAC 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 70, 424
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 2 cut(s) 67, 421
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 67, 421
BstYI RGATCY 2 cut(s) 67, 421
BstZ17I GTATAC 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 240
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 510
CviAII CATG 3 cut(s) 209, 329, 530
CviJI RGCY 7 cut(s) 12, 55, 175, 207, 239, 296, 415
CviKI_1 RGCY 7 cut(s) 12, 55, 175, 207, 239, 296, 415
CviQI GTAC 1 cut(s) 510
DpnI GATC 2 cut(s) 69, 423
DpnII GATC 2 cut(s) 67, 421
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 177, 417
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 177, 417
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 212, 332, 533
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 208, 328, 529
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 18
FriOI GRGCYC 2 cut(s) 177, 417
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 469
HapII CCGG 1 cut(s) 5
Hin1II CATG 3 cut(s) 212, 332, 533
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 4 cut(s) 25, 213, 476, 488
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 162, 461
Hpy188III TCNNGA 8 cut(s) 29, 49, 65, 275, 290, 317, 492, 530
Hpy8I GTNNAC 2 cut(s) 162, 461
HpyAV CCTTC 3 cut(s) 229, 371, 536
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 348
Hsp92II CATG 3 cut(s) 212, 332, 533
Kzo9I GATC 2 cut(s) 67, 421
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 29
MalI GATC 2 cut(s) 69, 423
MboI GATC 2 cut(s) 67, 421
MboII GAAGA 4 cut(s) 92, 140, 208, 461
MflI RGATCY 2 cut(s) 67, 421
MhlI GDGCHC 2 cut(s) 177, 417
MluCI AATT 5 cut(s) 284, 406, 470, 501, 525
MseI TTAA 2 cut(s) 426, 556
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 208
NdeII GATC 2 cut(s) 67, 421
NlaIII CATG 3 cut(s) 212, 332, 533
PagI TCATGA 1 cut(s) 529
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 4 cut(s) 25, 213, 476, 488
PkrI GCNGC 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 465
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 1 cut(s) 84
PsuI RGATCY 2 cut(s) 67, 421
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 426, 556
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 67, 421
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 2 cut(s) 177, 417
SetI ASST 4 cut(s) 14, 36, 57, 417
SfaNI GCATC 1 cut(s) 335
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 5 cut(s) 284, 406, 470, 501, 525
SsiI CCGC 2 cut(s) 17, 20
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 479
TasI AATT 5 cut(s) 284, 406, 470, 501, 525
TatI WGTACW 1 cut(s) 509
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 4 cut(s) 25, 213, 476, 488
Tru1I TTAA 2 cut(s) 426, 556
Tru9I TTAA 2 cut(s) 426, 556
TspDTI ATGAA 5 cut(s) 128, 297, 378, 518, 541
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 3 cut(s) 284, 470, 501
XbaI TCTAGA 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 460
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.