Rh5DG019100
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
1438148 .. 1439245
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG019100.1

Sequence Viewer

Length: 231 bp
ATGCTCTCTCCCAAAGGAAAGAAGCGGCCAACATGGAGGATCTTTTCCTTGAAGGAACTGCATGCAGCAACAAACAACTTTAATTATGACTACAAACTTGGAGAAGGACGATTTGGAAGTGTTTACTGGGGTCAGGTTTGGGATGGATCACAAGTCAAGAAAGAAGGAAGACTTTATGGGAATTCCCCAGTTTGTGCTAGCTTCTCTGTCTATACACGCAACTTGGAGTGA

Protein Analysis

76

Amino Acids

8.77

Weight (kDa)

9.72

Isoelectric Point (pI)

16.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08780 FvH4_1g08790 FvH4_1g08830 FvH4_6g25820
malus_domestica MD02G1092100.v1.1 MD02G1092500.v1.1 MD02G1093200.v1.1 MD15G1218600.v1.1
prunus_persica Prupe.7G197500_v2.0.a1 Prupe.7G197700_v2.0.a1 Prupe.7G197900_v2.0.a1 Prupe.7G198000_v2.0.a1 Prupe.7G198100_v2.0.a1 Prupe.7G198300_v2.0.a1
pyrus_communis pycom02g07340 pycom15g19370
rosa_chinensis RchiOBHm_Chr2g0094941 RchiOBHm_Chr2g0094971 RchiOBHm_Chr2g0095051 RchiOBHm_Chr2g0095221 RchiOBHm_Chr2g0095231 RchiOBHm_Chr2g0095261 RchiOBHm_Chr2g0103351 RchiOBHm_Chr2g0104551 RchiOBHm_Chr6g0297411
rosa_laevigata RLG00000016533 RLG00000016545 RLG00000016547 RLG00000016548 RLG00000017226
rosa_multiflora Rmu_sc0001555.1_g000008 Rmu_sc0003274.1_g000003 Rmu_sc0004316.1_g000013 Rmu_ssc0000183.1_g000015 Rmu_ssc0000183.1_g000017 Rmu_ssc0000183.1_g000023
rosa_roxburghii Rroxscaffold_2G00116650 Rroxscaffold_2G00139710 Rroxscaffold_2G00146510 Rroxscaffold_2G00146530 Rroxscaffold_2G00146690 Rroxscaffold_2G00146750 Rroxscaffold_3G00256890 Rroxscaffold_4G00297070 Rroxscaffold_4G00303160 Rroxscaffold_5G00374070 Rroxscaffold_6G00419510 Rroxscaffold_7G00186670 Rroxscaffold_7G00198970
rosa_rugosa Rorug01G0110700 Rorug02G0048900 Rorug02G0048900 Rorug02G0114200
rosa_samantha Rh1BG006000 Rh2AG162400 Rh2AG171200 Rh2BG096800 Rh2BG098400 Rh2CG098700 Rh2CG098900 Rh2CG100200 Rh2CG100400 Rh2CG169600 Rh2DG095400 Rh2DG095500 Rh2DG095600 Rh2DG098000 Rh2DG098100 Rh2DG168400 Rh4DG392900 Rh5DG019100 Rh5DG019200 Rh5DG460500 Rh6AG073600 Rh7DG484100
rosa_wichuraiana Rw2G007210 Rw2G007290 Rw2G007310 Rw2G007330 Rw2G012760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 47, 154
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 1 cut(s) 181
AgsI TTSAA 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
AlwI GGATC 2 cut(s) 47, 154
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 181
AsuNHI GCTAGC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 26, 66
BlsI GCNGC 2 cut(s) 27, 67
BmrI ACTGGG 2 cut(s) 136, 182
BmtI GCTAGC 1 cut(s) 201
BmuI ACTGGG 2 cut(s) 136, 182
BpiI GAAGAC 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 131, 188
BseGI GGATG 1 cut(s) 148
BseNI ACTGG 2 cut(s) 131, 188
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 28
BsnI GGCC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 39, 146
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 2 cut(s) 47, 154
BsrI ACTGG 2 cut(s) 131, 188
BssMI GATC 2 cut(s) 39, 146
BstC8I GCNNGC 2 cut(s) 63, 199
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 2 cut(s) 42, 149
BstMBI GATC 2 cut(s) 39, 146
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 63, 199
CviAII CATG 2 cut(s) 33, 62
CviJI RGCY 2 cut(s) 28, 201
CviKI_1 RGCY 2 cut(s) 28, 201
DpnI GATC 2 cut(s) 41, 148
DpnII GATC 2 cut(s) 39, 146
EaeI YGGCCR 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 181
FaeI CATG 2 cut(s) 36, 65
FaiI YATR 5 cut(s) 34, 63, 87, 177, 213
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 2 cut(s) 32, 61
Fnu4HI GCNGC 2 cut(s) 26, 66
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 26, 66
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 26, 66
HaeIII GGCC 1 cut(s) 28
Hin1II CATG 2 cut(s) 36, 65
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 46, 98, 158
HpyCH4V TGCA 2 cut(s) 61, 65
Hsp92II CATG 2 cut(s) 36, 65
Kzo9I GATC 2 cut(s) 39, 146
LpnPI CCDG 3 cut(s) 112, 119, 201
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 1 cut(s) 198
MalI GATC 2 cut(s) 41, 148
MboI GATC 2 cut(s) 39, 146
MboII GAAGA 1 cut(s) 180
MflI RGATCY 1 cut(s) 39
MluCI AATT 2 cut(s) 82, 181
MnlI CCTC 1 cut(s) 30
MseI TTAA 1 cut(s) 81
NdeII GATC 2 cut(s) 39, 146
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 36, 65
NspI RCATGY 1 cut(s) 65
PaeI GCATGC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 27, 67
PsuI RGATCY 1 cut(s) 39
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 26, 66
Sau3AI GATC 2 cut(s) 39, 146
SetI ASST 2 cut(s) 138, 203
SphI GCATGC 1 cut(s) 65
Sse9I AATT 2 cut(s) 82, 181
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 198
TasI AATT 2 cut(s) 82, 181
TauI GCSGC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 65
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 65
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.